Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name NAA20P2
Wait
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr12:23108037-23108644  UCSC
Coordinates (T2T) chr12:22979681-22980288  UCSC
Coordinates (hg19) chr12:23260971-23261578  UCSC
Strand -
Parental Sequence NM_181527.3
Parental seq. overlap 507 bp
Parental seq. overlap (%) 43%
Genomic Region Intergenic
Retrocopy Summary NAA20P2, located on chr12:23108037-23108644, is a retrocopy of the parental gene NAA20. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NAA20
Full Name N-alpha-acetyltransferase 20, NatB catalytic subunit
Also known as MRT73|NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1
Coordinate chr20:20017290-20033655
Strand +
Gene summary NAT5 is a component of N-acetyltransferase complex B (NatB). Human NatB performs cotranslational N(alpha)-terminal acetylation of methionine residues when they are followed by asparagine (Starheim et al., 2008 [PubMed 18570629]).[supplied by OMIM, Apr 2009]

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus NAA20P1
Gorilla Gorilla gorilla NAA20P1
Orangutan Pongo abelii NAA20P1
Chimpanzee Pan troglodytes Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse - (ARCHS4)

Related Sequence

>NAA20P2
GTATCTAACCAAATTGCAATCGACATGTACAAGCAATTCGGCTATAGCAAATACAGAACAGTCATAGAGTATGTCTGGGTCAACAACAGAGAGCCCGATGGAGACGCTTACAATGTGAGGAAAGCGACTTCCAGAGACACTGACAAGAAATCCATTGCCTCATCCTGTGCGCCCTGAAGACGTTGAATAACCGTGGGCAGTGTTCTAGGCAGATGCTTCAGGTATTTTATAGGCCATATTATTTTCATTGGATTGTCTTAGAATTTTATTAGGAGAAAAGTAATCATTTAGGTACTAAAGACTTCAAGAAAATATAGGTTATAAACTTATTTAAAATCTCATTATTTCCAATCAGCAATATTATACCTACTAAAACTGTTCACTGTAATAAAATTCAATCCAAAAAGGGTGTAGGTCAGAAGGAAGCATTCCACTATCATGGTTTTTCATATTCACTACATGCTAAGGAAAAAAACACTTGCTCCTATCTCTTCCTAAATTCTGTGCCTGAAAACCACGGCATACATATTTTTTAAAATTTTGTATTGAACTGTTAACTGGAGCTTTAAAAGCGTATATGCAATGCATAAATCTAAGACGTATAATAA
>NM_181527.3
GAGCCCACGACCTGGGCTTCTCGCCCTGCCCTACTGCTTGCTGGTTCGTGGCCGGGCCGCGCCTCTTCTGGGCAGAGGGCACCGCCGACGGCCAGGCCGCAGAGGGGGCTTGCGAGGATCGGAAGCTGGTCAGCAGCTGTTGGGATGTGTACATCGTGAAGCCCACCTGGTGGCCGTGGTTAAATTGTATCCAAATGAAATGACACTGATCACTGCGTCCCCTGCAGCAGATGCTGTCTCAGTCATGTAACTTGGATCCACTTACAGAAACTTATGGGATTCCTTTCTACCTACAATACCTCGCCCACTGGCCAGAGTATTTCATTGTTGCAGAGGCACCTGGTGGAGAATTAATGGGTTATATTATGGGTAAAGCAGAAGGCTCAGTAGCTAGGGAAGAATGGCACGGGCACGTCACAGCTCTGTCTGTTGCCCCAGAATTTCGACGCCTTGGTTTGGCTGCTAAACTTATGGAGTTACTAGAGGAGATTTCAGAAAGAAAGGGTGGATTTTTTGTGGATCTCTTTGTAAGAGTATCTAACCAAGTTGCAGTTAACATGTACAAGCAGTTGGGCTACAGTGTATATAGGACGGTCATAGAGTACTATTCGGCCAGCAACGGGGAGCCTGATGAGGACGCTTATGATATGAGGAAAGCACTTTCCAGGGATACTGAGAAGAAATCCATCATACCATTACCTCATCCTGTGAGGCCTGAAGACATTGAATAACCCTGGGCAGTGGTTCTTAGGCAGATACTCTAGATGCTTTATGGACAATATTATTTTCATTGGATGATTCTGGAGCTCTATTAGGAGAAAAGTAATCATTTTAGGTCTTAAAGACTTCAAGAAAATACAGGTTATCAATTTATTTTAAATCTCATTGTTTCCAGTTAGCAATATCATACCTATTAAAGCTGTTCATTGTAACAAAATTCAATCAAAAAGGCAGCTAGGTCAGAAGGAAACATACCACTCTCATGGTTCATAGTATTCACTGTATGTATGCTAGGGAAAAGACTTGCTCCAGTCTCCTCCTCAGTTCTGTGCCTGAGAACCACTGCTGCATATATTTGTTTTTAAATTTTGTATTGAACTGTTAATTGAAGCTTTAAAAGCATATATGAAATGTATAAATCTAAGATGTATAATACATTATTGACTCTATGAA

Publications

PMID - Link Title
No publications available for this retrocopy