Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FAM133FP
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:227597450-227599401  UCSC
Coordinates (T2T) chr1:226786385-226788336  UCSC
Coordinates (hg19) chr1:227785151-227787102  UCSC
Strand -
Parental Sequence NM_001040057.3
Parental seq. overlap 1644 bp
Parental seq. overlap (%) 63.7%
Genomic Region Intragenic (ZNF678)
Retrocopy Summary FAM133FP, located on chr1:227597450-227599401, is a retrocopy of the parental gene FAM133B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FAM133B
Full Name family with sequence similarity 133 member B
Also known as -
Coordinate chr7:92560758-92590390
Strand -
Gene summary Enables RNA binding activity. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes FAM133BP1
Bonobo Pan paniscus FAM133BP1
Gorilla Gorilla gorilla FAM133BP1
Orangutan Pongo abelii FAM133BP1
Crab-eating macaque Macaca fascicularis FAM133BP1
Rhesus Macaca mulatta FAM133BP1
Greater horseshoe bat Rhinolophus ferrumequinum FAM133BP2
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FAM133FP
AGGAATATGTTCTACATCCTGGCCTATATAAACCCAATAGCAATGGCGAGATCAAGGGGTCCAATCCAGTCTTCAGGGCCAACAATACAGGATTATTTGAATCGACCAAGGCCTACCTGGGAAGAAGTAAAAGAGCAACTAGAAGAGGAGAAAAGAAAGGCTCCAAGGTTTTGGCTGAATTTGAAGAAAAAAATGAATGAGAACTGGAAGAAAGAACTAGAAAGAGACAGGGAGAAATTGTTAAGTGGAAGTGAGAGCTCATCAAAACAAAAAAAGAAAAGAATAAATTTGGTAGGTATTCATCTTCTTCTTCATTAAGCTCTAATTCTTCCAGCAGTTCTTCTGATTGTGAAAATGAGGATAAGAAACAAGGAAAACAGAGAAAGAAAAAGAACCGTTGACATAAATCTTCTGAAAGCTCCATGTCATAATCTGAATCAGACAGTAAGGATAGTTTAAAAAAGAAAAAGAAGTCAAAAGATGCAACGGAGAAAGAAAAGGACATTAAAGGGCTCAGCAAAAAGAGAACGATAAATTCTTAAGATAAACCTTTATCATCCAAGTCCTTGTCAGAATCACAGTTTACTGAGGAGGTACGAGCAAAAAAGAAGAAAAGCAGTGAAAAATGAGAAAAAGCAACAGAAAAAAAACAAAAAAAGAAAAAGAAGCATAAGAAACATAGTAAGAAGAAAAAGAAGGCTGCTAGTTCAAGTCCTGACTCACCATAACATTAAGAAAAATCAGGATTCCCTTATAAAGAAAGTGCAATGTCTGAGGAAATTTCAACTGTGAAAACTACAACATATTTACTAAAATCCACGAATTTTCTTGTGTTTAGAATTATTCCTGGACTATTCAGTAGCCACTCAGATGCCACTGTGTGAAAGGGCCACAAATGTTGCCTGCCGCTTGAACATCTGTTTTTTTCTCTTCCAGTGCTTGATAATTCTGGGAGATAATACTCTGCAGTCAGACTAGTGGTTATTTGGGAATAAAATTAATACTTTTAGCTAGAAGTGTCCTAGGATAAACCAACAGAAATTGAATCTGGATACATCTTTGAGATGTAGTCAGAAATGACCAGATGACTCTAGTTAAAATTTTTGGAGGAGGGATTACATTAATATTTCAAAACCCTTACTCTGTAGAGAAGCATATTTTAATTTTTTCCCCTCGTATACTTTTATTTACCTGGGGAAGGAGCTTTTAGGGTTGCGGAGCTGGTTTGCTATCTCTTTAGCTAGCAGAATAGTGTGCCTTTGATCCTCACACATCCTGTATTGTGGACATAGTAGCCACACTTCACTGAGAGGTCAGAGCTGGGTACCAGCAGTCTTGCCCTTTACTGAGCTTAGTGTCATCCTTTACTGAGCTTAGTGTCATCCTTTAATTTTCTTTTTTATTTTTATTAAGTAAAATAGCTATTTATTCAGCCTGTTGTCATGCCAATATGTTCTGTCATATGCTGCTTTGAGTGAACCAGAGAAACAGCCATTTGCAGCATGAGAAAGCCCCAAAAGCTCTGGGATTTACCTCCACTTCAATAATAATGAATATTTTTTAGCATTAGAATGTGCTATGTCATTTGAATTAATTTTGATTACACTTTGGCTTGGGAGAGGAATTATTTTAAATAGACACTGGTACTTTTTGAACTTGATAGCTGAAGATTCTAAAACGCATGTTTTATACTAAGTTTTAtGGGGAGGCGGCAGGAGGACCTGCAGTGGGCCTGCTTCGGCCTTCTCTCTGGCCTGGTTTCCCTCAGCGTGCGACTGTGCACTCAGCCCAGCACCATGGGGAAGTGGGACAACCGCGTGGTACTGCCAAAATTATGACATGATACCAACGGAATTAGAATGTGATCAATACTGTTAAAAACAa
>NM_001040057.3
GGAGTGGGGAGGCGGCAAGAGGACCTGCGGCAGGCCCTCTTCGGCAGTCTCTCCGGCCCGGTTTCCCTCGGCGTGCTACTGTGCGCTCGATCCAGCACCATGGGGAAGCGGGACAATCGGGTGGTACTGCCAAAATTATGACATGATACCAAGGAAATTAGAATGTGATCAATATTGTTGAAAACAaaaacaaaaacctgagaccagttaaatttaacaaagGCCTATATGAACCCAATAGCAATGGCGAGATCAAGGGGTCCAATCCAGTCTTCAGGGCCAACAATACAGGATTATCTGAATCGACCAAGGCCTACCTGGgaagaagtaaaagagcaactagaaaagaaaaagaaaGGCTCCAAGGCTTTGGCTGAATTTGAAGAAAAAATGAATGAGAACTGGAAGAAAGAACTGGAAAAACACAGGGAGAAATTGTTAAGTGGAAGTGAGAGCTCATCCAAAAAAAGACAGAGAAAGAAAAAAGAAAAGAAGAAATCTGGTAGGTATTCATCTTCTTCTTCATCAAGCTCTGATTCTTCCAGCAGTTCTTCTGATTCTGAAGATGAGGATAAGAAACAAGGAAAACGGAGAAAGAAAAAGAAGAACCGTTCACATAAATCTTCTGAAAGCTCCATGTCAGAAACTGAATCAGACAGTAAGGATAGTTTAAAAAAGAAAAAGAAGTCAAAAGATGGAACTGAGAAAGAAAAGGATATTAAAGGACTCAGCAAAAAGAGAAAGATGTATTCTGAAGATAAACCTTTATCATCTGAGTCCTTGTCAGAATCAGAGTATATTGAGGAGGTGCGAGCAAAAAAGAAGAAAAGCAGTGAAGAACGAGAAAAAGCAACAGAAaaaacaaaaaagaaaaagaagcataagaaacacagtaagaagaagaaaaagaaGGCTGCTAGTTCAAGTCCTGACTCACCATAACATTAAGAAAAATCAGGATTCCCTTATAAAGAAAGTGCAATGTCTGAGGAAATTTCAACTGTGAAAACTACAACATATTTACTAAAATGCATGAATTTTCTTGTTTTTGGAATTATTCCTGGACTATTCAGTAGCCACTCAGATGCCACTGTGTGAAAGGGCCATAAATGTTGCCTGCTGCTTGAACATCTATTTTTTTCTCTTCCAGTGCTTGATAACTCTGGGAGATAATACACTGCAGTCGTACTAGTGGTTAAGATATTTGGGAATAAAATTAATACTTTTGACTAGAAGCGTCTAAGGATAAACCAACAGAAATTGAATCTGGATACATCTTTAAGATGTAATCAGAAATGACCAGATGACTCTAGTTAGAATTTTTGAAGGAGGGATTACATTAATATTTCAAAACCCTTACTCTGTAGATAAGTGTATTTTAATTTTTTCCCCTCGTATACTTTTATTTACCTGGGGAAGGAGCTTTTAGGGTTGGGGGGTGGTTTGCTATCTCTTTAGCTAGCAGAATAGTGTGCCTTTGATCCTCACACATCCTGTATTATGGACACAGTAGCCATGCTTCACGGGGAGGTCAGAGCTGGCTACCAGCAGTCTTGCCCTTTACTGAGCTTAGTGTCATCTTTGGATGCTGTCATATGCTGCTTTGAGTGAACCAGAGAAACAGCCATTTGCAGCATGAGAAAGCCCCAAAAGCTCTGGGATTTACCTCCACTTTAGTAATAATGAATATTTTTTAGCATTAGAATGTGTTATGTCATTTGAATTAATTTTGACTACACTTTGGCTTGGGAGAGGAATTATTTTAAATAGACATTGGTACTTTTTGAACTTGATAGCTAAAGATTCTAAAATGCATGTTTTATACTAAGTTTTAACCAGTCAGGAAAATTTTATGTAACTAGTGATAGTTTATTTTTTTGTATGAATTTTGTTTAGGCTGCAATGTTTAGCTTTTGTTAACTCCTCACTCTTGCTGTCTTAAGTTCATTACTATGTTTAATGGCCTACTTGCCAAGATATTTAGCATGTAAAAAGCAGGGTTTTGATTAAAAAAAAAAAACGGCTTCATATTGAAGCTGAGACTTACAATAACAAGTTGAGTGGCAAGCCTGGTATGCTGTGTCTTATTGCCAGAATCTTAGTAAATGTAATGTTTTAAAAGTTTGTTGTCTTTGTATATTAATAACAAATTATGACAAGTTAAGTTTAAATAAGAGTTACATTATTGCTCTCCCTGTGTCATATTTTACTAAGATTTTGTGCCTCATGTCTACTGCTGAATTGTTTACTAGGAATGTTAAAAGGAATTGATAATTCATTTTCATTTTACATTTTTATATAATCAGGTAACATGACATACAACTTGATGTACAATTTTGCCTGTTACAAAGGGTGTGCTAATTATAGTGGTATATGCACAGAACATGTTGGCATGACAACAGGCTGAATAAATAGCTATTTTACTTAAAAATAGCTGTGTTCTTATCAGCTCCCTTTGGACTGCAA

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