Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name IFT57P1
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Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr12:28165237-28165482  UCSC
Coordinates (T2T) chr12:28037338-28037583  UCSC
Coordinates (hg19) chr12:28318170-28318415  UCSC
Strand +
Parental Sequence NM_018010.4
Parental seq. overlap 210 bp
Parental seq. overlap (%) 6.9%
Genomic Region Intergenic
Retrocopy Summary IFT57P1, located on chr12:28165237-28165482, is a retrocopy of the parental gene IFT57. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name IFT57
Full Name intraflagellar transport 57
Also known as ESRRBL1|HIPPI|MHS4R2|OFD18
Coordinate chr3:108160812-108222424
Strand -
Gene summary Predicted to enable DNA binding activity. Acts upstream of or within activation of cysteine-type endopeptidase activity involved in apoptotic process; apoptotic process; and regulation of apoptotic process. Predicted to be located in ciliary basal body. Predicted to be part of axoneme and intraciliary transport particle B. Predicted to be active in Golgi apparatus; centrosome; and cilium. Implicated in orofaciodigital syndrome. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes IFT57P1
Bonobo Pan paniscus IFT57P1
Gorilla Gorilla gorilla IFT57P1
Orangutan Pongo abelii IFT57P1
Gibbon Nomascus leucogenys IFT57P1
Green monkey Chlorocebus sabaeus IFT57P1
Crab-eating macaque Macaca fascicularis IFT57P1
Rhesus Macaca mulatta IFT57P1
Baboon Papio anubis IFT57P1
Golden snub-nosed monkey Rhinopithecus roxellana IFT57P1
Marmoset Callithrix jacchus IFT57P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse - (ARCHS4)

Related Sequence

>IFT57P1
AGAAATTAGTAAGACTTTGGAAAAGATCAGCCACTGTGAAAAGTACATCAACCATCAGCTTGAGCACAGGGTTCAAGAATATCCTGCAGCTCAAACCCAGCTGAGTGATGTAAGGAGCCAGCAAGGAAGTGGTGGAGTAATTGAAAGGACCAGACTTCTGTCTGAGGCTACAGAAGACAGAACATGTAAAACTAGAAATGGAAGAAAAGTGCAGCAGCATGACTGATGGTGATTCTTTGGTTAAGA
>NM_018010.4
GCCTGGTAACCGGTCGTGGCTGTACTGGCGGCGGCAGGGCTGGCGGCTTAGGCCGCAGAGGTCTGTGGGCCTGAGCCCACGCTGGACTCTGTCCGTTCTGCGATGACTGCTGCTCTGGCCGTCGTCACGACGTCGGGTTTGGAAGATGGGGTGCCTAGGTCCCGTGGCGAAGGGACCGGGGAAGTGGTCTTGGAGCGGGGGCCCGGCGCGGCCTACCACATGTTCGTGGTGATGGAGGACTTGGTGGAGAAGCTGAAGCTGCTCCGCTACGAGGAGGAGTTCCTCCGGAAGAGCAACCTGAAGGCCCCGTCCAGACACTATTTTGCACTGCCTACCAACCCTGGCGAACAGTTCTACATGTTTTGTACTCTTGCTGCTTGGTTGATTAATAAAGCGGGACGTCCCTTTGAGCAGCCTCAAGAATATGATGACCCTAATGCAACAATATCTAACATACTATCCGAGCTTCGGTCATTTGGAAGAACTGCAGATTTTCCTCCTTCAAAATTAAAGTCAGGTTATGGAGAACATGTATGCTATGTTCTTGATTGCTTCGCTGAAGAAGCATTGAAATATATTGGTTTCACCTGGAAAAGGCCAATATACCCAGTAGAAGAATTAGAAGAAGAAAGCGTTGCAGAAGATGATGCAGAATTAACATTAAATAAAGTGGATGAAGAATTTGTGGAAGAAGAGACAGATAATGAAGAAAACTTTATTGATCTCAACGTTTTAAAGGCCCAGACATATCACTTGGATATGAACGAGACTGCCAAACAAGAAGATATTTTGGAATCCACAACAGATGCTGCAGAATGGAGCCTAGAAGTGGAACGTGTACTACCGCAACTGAAAGTCACGATTAGGACTGACAATAAGGATTGGAGAATCCATGTTGACCAAATGCACCAGCACAGAAGTGGAATTGAATCTGCTCTAAAGGAGACCAAGGGATTTTTGGACAAACTCCATAATGAAATTACTAGGACTTTGGAAAAGATCAGCAGCCGAGAAAAGTACATCAACAATCAGCTTGAGAATTTGGTTCAAGAATATCGTGCAGCTCAAGCCCAGCTGAGTGAGgcaaaggagcgataccagcagggaaatggaggagtgacggaaagaaccagactcctctctgagGTTATGGAAGAATTAGAAAAGGTAAAACAAGAAATGGAAGAAAAGGGCAGCAGCATGACTGATGGTGCTCCTTTGGTGAAGATTAAACAGAGCTTAACAAAACTGAAGCAAGAAACTGTAGAGATGGACATTAGAATTGGCATTGTGGAACACACACTACTCCAATCAAAGCTGAAGGAGAAGTCCAACATGACTAGGAACATGCATGCCACAGTTATTCCAGAACCAGCAACAGGCTTTTATTAAAACATACTGGTTTTCATGTTTCTGATTAGTTGGGTTTTTTATATCAAACTATATTTCATGTTGCATAGATTTCAAAACATAATTTTATGTTCAATGGGTATTTTTTTACATATACATACTCACATATTATATCATGGTGATTATGATGGTTAAAGCCTTTACACTGAATGTAATGTTTAATAAAGAAATTACAAATTCTCACTTTCTAAGAAGCTTTCACTAATCATTACCTATGTTAAAGCTCCCACCTGGTGGCTCATTTTTCATAGCATTCCTTGTGTAAGCCAAGGTATATGACCTGCGTTTTCTGCAGATGCTGCTGCTGTCACAACATGAACTGCTGACACAGTCCTTTACCTTGCTCCACCTCTGCAGTGATCATAAGTGCTTTGTGCCCAGAGGCCACTGAAGATGGTAGGCAGGATTCTTTCCAAGAACCCAAACTGCCTTTGCCTCAGCTTTATGGTTACCTAAAATTGCCACTTTTTTTAGGTTAAAAAAAACTTCAGTATCCTCATTAACATTTGAAGTTGGTTTCTTATGAATATTTCGTGGCTAAAATGATTTTATAGGGAATCTATCTTCTAGGATCTAAGCCACTAAATAAAAGGATAAATGAATGATGATAAGTCAGTCACTCATGTTTGACTCTGTTCTTAGAATGAAGAGAAGGTGCATATGCATGTCTCAATTTCTACCTTTTTCTGTGGTATCGGCTATACTAGGGAACCATTTTGTAGAAGAAGGAACGATGACAGGTCGCATGAAGATCAGCCTCTAGTACTGATGATCTTTACTTATGCATCTTCCTGAGCAACTTTCTAGGCTAGGATTTCTAAATTGGTGAAAAAAGCAGCATTAGAGTGCCAGAATTAGCACTGGGGAAAACTGGCCAGGGGAACACAAAGCAGGAGACAGCCTGCGTTAATTTTTTTTTTTTAATAATTTTCAAAAGCAGTGGTAGAAAATTTGATAAGAATGCTTTATGTTTAGGACAACAAAAATAATTTTAAAAAGTTATTTTTTACCCTAATACTTTTCTCCACTGAATATTATTATTTTTTTCTTAGCTTTTTCTTTCTAGATGTATTCCCCAACATGCTCACATACACAGATCTTTCCCTTTCCTTACTAGACCTCTCTTTAGTTTAAGATAAGTTTAGACAGGAGAAAGTGTATGTAAACTACCTGAAAGGATGACAATCAATACAATGACAAATATGCCAGTTTATTTAATTTGTTTAAAAAAAAAAAGGCAGAAAACCCACCATGGGAAAATAAGCATTTTTTAAAATCTGAAGTTGCTCTTTTCCTGTGTGGTCTTTGGGAGGAGTCTAATACAAAAACTGAAAACCTTTGGTCCTGGGAATTTATTTTCATGGCTGTTGTCATGGCTGAGTAGTTTTTTGATGAATTCAATCAATGCAGAGAACGCTTTTAGATAAATCAGAACTCTCCTTAAAATGCATTTCAATCAGAAGCAAAGTACACCCATTATTTATGCAGACATGTAAAAAATCTAAAAATTCTTGCAATGAGTAGTATAAGCCACCTATTTTTACTTccttctctgaaatattccagttaactcagcttgggttctgtgctcctcctctcttcctatagaacactgtgcataccttgaataaagagcttattatacta

Publications

PMID - Link Title
No publications available for this retrocopy