Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CALM2P5
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr9:65515089-65516503  UCSC
Strand -
Parental Sequence NM_001285041.1
Parental seq. overlap 1018 bp
Parental seq. overlap (%) 87.3%
Genomic Region Intragenic (SAR1A)
Retrocopy Summary CALM2P5, located on chr9:65515089-65516503, is a retrocopy of the parental gene CALM2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CALM2
Full Name N/A
Also known as -
Coordinate chr13:63214755-63230000
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CALM2P2
Chimpanzee Pan troglodytes CALM2P2
Bonobo Pan paniscus CALM2P1
Gorilla Gorilla gorilla CALM2P2
Orangutan Pongo abelii CALM2P5
Gibbon Nomascus leucogenys CALM2P6
Green monkey Chlorocebus sabaeus CALM2P3
Rhesus Macaca mulatta CALM2P5
Baboon Papio anubis CALM2P4
Golden snub-nosed monkey Rhinopithecus roxellana CALM2P6
Marmoset Callithrix jacchus CALM2P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CALM2P5
AGTCCAAGTGGAGCAACTGAGCAAGCAGAGTGGTTGTATGGTTGTGTCTCGGAAACCAGTAGCACTTGCAGCACTGACTGAAGAGCAGATTGCAGAATTCAAATAAGTTTTTTCACTATTTGACAAAGATGGTGATTGAACTACAACAACAAAGAAACTGGGAACTGTAATGAGGTCTCAGGCAGAATCCCACAGAAGCAGAGTTACAGGATGTGATTAATGAAGTAGATGCTGATGGTAATGGCACAACTGACTTCACTGAATTTCTGACAATGATCGCAAGAAAAATGAAAGACACAGACAGTGAAGAAGAAATTAGAGAAGCATTCAGTGTGTTTGATAAGGATGGCAATGGCTATATTAGTGGTGTAGAACTTCACCATGTGATGACAAACTTGGAGTGAAGTTAACAGATGAAAAAGTTGATTAAATGATCAGAGAAGCGTATCTTGATAGTGACGGTCAAGTAAACTATGAGTTTGTACAAACGATGACAGCAAAATGAAGACCCTGTACAGAATGTGTCAAATTTCTTGTACAAAACTGTTTATTTGCCTTTTGTTTGTAACTTATCTGTAAAAGGCTTCTCCCTACTGTCAAAAAAAGATGCATGTATAGTAATCAGGACTATCAGGACTTCATTCCTCCATGTGTTCTTCCCTTACTGTCATTGCCCTGAAACTTTATTTTAGAAAACTGATGAAGTAACATGTTACCTGTGGCTTACTCTGGATATATCTAAGCCCTTCTGCACATCTAAACTTAGATGGAGTTGGTCAAATAAGGGAACATCTGAGTTATGCCtACCTTTTTTTTTTAAGTAGTTTTCTTTAGGAACTGTCAGCATGTTGTTGAAATGTGGAGTTGTAACTCTGCGTGGACTACGGACAGCCAACAATATGTACTTAAAAGTTACACTACTGCAGAACGGGTGTATTATCCAGGTACTTCCAGGTACCTTGTACACTATTTTTTTGTACTGCTGGTCCTGTACCAGAAACATTTTCTTTTACTGTTACTTGCTTTTTAAACTCTGTTTAGACACTTAAAGAAAATCTGCTTATGACACAATTTGCCTCAAATCCATTCCAAGTTGTGTATTTGTTCTCCAATTTAAAAAAAC
>NM_001285041.1
AATTAGTCCGAGTGGAGCGAGCGAGCTGACTGGTTGTGTGGTCGCGTCTCGGAAACCGGTAGCGCTTGCAGCATGGCTGACCAACTGACCGAAGAGCAGATTGCAGAATTCAAAGAAGCTTTTTCACTATTTGACAAAGATGGTGATGGAACTATAACAACAAAGGAATTGGGAACTGTAATGAGGTCTCTTGGGCAGAATCCCACAGAAGCAGAGTTACAGGACATGATTAATGAAGTAGATGCTGATGGTAATGGCACAATTGACTTCCCTGAATTTCTGACAATGATGGCAAGAAAAATGAAAGACACAGACAGTGAAGAAGAAATTAGAGAAGCATTCCGTGTGTTTGATAAGGATGGCAATGGCTATATTAGTGCTGCAGAACTTCGCCATGTGATGACAAACCTTGGAGAGAAGTTAACAGATGAAGAAGTTGATGAAATGATCAGGGAAGCAGATATTGATGGTGATGGTCAAGTAAACTATGAAGAGTTTGTACAAATGATGACAGCAAAGTGAAGACCTTGTACAGAATGTGTTAAATTTCTTGTACAAAATTGTTTATTTGCCTTTTCTTTGTTTGTAACTTATCTGTAAAAGGTTTCTCCCTACTGTCAAAAAAATATGCATGTATAGTAATTAGGACTTCATTCCTCCATGTTTTCTTCCCTTATCTTACTGTCATTGTCCTGAAACCTTATTTTAGAAAATTGATCAAGTAACATGTTGCATGTGGCTTACTCTGGATATATCTAAGCCCTTCTGCACATCTGAAGTTAGATGGAGTTGGTCAAATGAGGGAACATCTGGGTTATGCCTTTTTTTAAAGTAGTTTTCTTTAGGAACTGTCAGCATGTTGTTGTTGAAGTGTGGAGTTGTAACTCTGCGTGGACTATGGACAGTCAACAATATGTACTTAAAAGTTGCACTATTGCAAAACGGGTGTATTATCCAGGTACTCGTACACTATTTTTTTGTACTGCTGGTCCTGTACCAGAAACATTTTCTTTTATTGTTACTTGCTTTTTAAACTTTGTTTAGCCACTTAAAATCTGCTTATGGCACAATTTGCCTCAAAATCCATTCCAAGTTGTATATTTGTTTTCCAATAAAAAAATTACAATTTA

Publications

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