Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name FGD6P1
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr12:49013748-49014325  UCSC
Coordinates (T2T) chr12:48975920-48976497  UCSC
Coordinates (hg19) chr12:49407531-49408108  UCSC
Strand -
Parental Sequence NM_018351.4
Parental seq. overlap 231 bp
Parental seq. overlap (%) 2.5%
Genomic Region Intragenic (PRKAG1)
Retrocopy Summary FGD6P1, located on chr12:49013748-49014325, is a retrocopy of the parental gene FGD6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FGD6
Full Name FYVE, RhoGEF and PH domain containing 6
Also known as ZFYVE24
Coordinate chr12:95076749-95217467
Strand -
Gene summary Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Predicted to be involved in several processes, including filopodium assembly; regulation of GTPase activity; and regulation of cell shape. Predicted to be located in Golgi apparatus; lamellipodium; and ruffle. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes FGD6P1
Bonobo Pan paniscus FGD6P1
Gorilla Gorilla gorilla FGD6P1
Gibbon Nomascus leucogenys FGD6P1
Green monkey Chlorocebus sabaeus FGD6P1
Crab-eating macaque Macaca fascicularis FGD6P1
Rhesus Macaca mulatta FGD6P1
Baboon Papio anubis FGD6P1
Golden snub-nosed monkey Rhinopithecus roxellana FGD6P1
Orangutan Pongo abelii Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FGD6P1
TTTACAAAAATGAACACTGCCAAGATAAACCCAACCAAACTCTTCATCAGTTATAAGAAATTATTTTGTTAGGTATACGTAGTTTTTTAAAAATTTGTTTTTTCAAGTATGTTATTTATTAAAATTTTGATGTAATGCTCGTTCAGCTCAGAAGTGGATAGAAGCATTTCTGGAAGGCACAATATTGTAGCAGTATTGGTTTCTTCTCTTCTGTGATTCCAGAGAGGTAGAATTTCATCAGAATGGAGTAAATACATTCAAAAATTTTATAAAAATg
>NM_018351.4
GCTAGTGCTCGCCCGCCCGACCCCGGCGGCTCGCGCCCGGGAGCGCCGCAGGGTCGCTAGAGTCGGCCGCGTCCTTTGTGTGGCGCTCAGGCTGCGCCGCGGGGCGGCGGGACGGAATGTGGGCGCTGCGGGGGCTTTTCTCTCCTACCCGAACTGTGGGAACAATGGACTGAAAGGGGAAGATGGATTGAGGGGCCGAGCGGGGAAGCGAGCTGCACCGGGGAATCATGACTTCTGCAGCCGAGATAAAGAAGCCACCAGTGGCCCCCAAGCCCAAGTTTGTTGTGGCAAATAATAAGCCAGCCCCACCTCCTATTGCACCTAAACCCGACATTGTGATTTCTAGTGTTCCACAGTCGACAAAGAAAATGAAACCAGCAATAGCCCCAAAACCAAAAGTCCTGAAGACCTCACCTGTTCGAGAGATTGGGCAGTCGCCATCAAGGAAAATCATGTTGAACCTGGAAGGGCATAAACAGGAATTAGCTGAAAGCACTGACAACTTTAATTGTAAATATGAAGGCAATCAGAGCAATGATTATATTTCACCAATGTGTTCCTGCAGTTCTGAGTGTATCCATAAGCTGGGCCATAGAGAGAATTTGTGTGTAAAGCAGCTTGTTTTAGAGCCCCTGGAAATGAATGAAAATTTAGAAAACAGTAAAATTGATGAGACTTTGACTATAAAAACTAGGAGTAAATGTGATTTGTATGGTGAAAAAGCCAAGAACCAGGGTGGGGTTGTTTTAAAGGCAAGCGTTTTAGAAGAGGAGCTCAAAGATGCCTTAATACACCAAATGCCACCTTTTATTTCTGCACAGAAGCACAGGCCCACAGACAGCCCAGAAATGAATGGTGGCTGTAATTCAAATGGACAATTCAGAATTGAATTTGCGGATTTGTCACCTTCCCCATCCAGCTTTGAAAAAGTTCCTGATCATCACAGTTGCCACTTACAGCTTCCTAGTGATGAATGTGAACATTTTGAAACTTGCCAGGATGACAGTGAAAAAAGCAATAATTGCTTTCAGTCATCTGAACTAGAGGCTCTGGAAAATGGGAAAAGGAGTACTTTAATATCTTCAGATGGAGTTAGTAAGAAATCAGAAGTCAAAGACCTTGGTCCCTTAGAAATTCATTTAGTACCATATACCCCAAAATTTCCAACTCCCAAGCCCAGAAAGACACGAACTGCTCGTCTGTTACGCCAAAAGTGTGTAGATACTCCTAGTGAAAGCACTGAAGAACCGGGGAATTCAGACAGTAGCTCTTCCTGTCTTACTGAAAATAGTTTGAAAATCAATAAAATCAGTGTTCTGCATCAGAATGTTTTGTGTAAGCAGGAACAGGTGGATAAAATGAAGCTAGGAAATAAAAGTGAATTGAATATGGAATCCAACAGTGATGCACAGGACTTAGTCAATTCACAGAAAGCCATGTGTAATGAAACAACTTCCTTTGAAAAAATGGCACCTTCTTTTGATAAAGACTCTAATTTGAGTTCTGACAGCACAACTGTAGATGGTTCTAGTATGTCGCTTGCTGTGGACGAAGGGACCGGTTTTATAAGATGTACTGTATCTATGAGCCTGCCTAAGCAGCTCAAATTAACTTGCAATGAACATTTGCAATCTGGGAGAAACCTGGGAGTTTCTGCCCCTCAAATGCAAAAGGAATCTGTTATAAAAGAGGAAAATTCTCTACGAATTGTCCCCAAAAAACCTCAAAGACATAGCTTGCCTGCTACAGGAGTGCTTAAAAAGGCTGCCTCCGAGGAGCTTTTGGAAAAAAGTTCTTATCCTTCAAGTGAAGAAAAAAGTTCAGAGAAGAGTCTAGAAAGAAATCACCTTCAGCATTTGTGTGCCCAAAACCGTGGTGTGTCATCCTCCTTTGATATGCCTAAACGGGCTTCAGAAAAGCCAGTGTGGAAGTTACCTCATCCTATTTTACCCTTTTCAGGGAACCCAGAATTCTTAAAGTCTGTCACCGTATCGTCAAACAGTGAGCCTTCAACAGCCCTAACCAAGCCCAGAGCAAAATCGTTATCTGCTATGGATGTGGAAAAGTGCACTAAGCCTTGCAAAGACTCTACAAAGAAAAACTCTTTTAAAAAGTTGCTCAGCATGAAACTGTCCATCTGTTTCATGAAGAGTGACTTTCAAAAATTTTGGTCCAAGAGTAGCCAACTCGGAGACACCACCACAGGCCACCTCTCCAGTGGGGAGCAGAAGGGGATTGAAAGTGATTGGCAAGGCTTGTTGGTAGGAGAGGAGAAGAGAAGTAAACCCATCAAGGCATATTCCACAGAAAACTATAGCCTGGAATCTCAAAAGAAGAGGAAGAAGTCTCGGGGCCAGACCAGTGCAGCTAATGGTCTGAGAGCTGAGTCTTTGGATGACCAAATGCTCTCCCGGGAGTCATCATCTCAGGCACCTTACAAGTCTGTTACAAGCCTCTGTGCACCGGAGTATGAAAATATACGCCATTATGAGGAAATACCAGAGTACGAGAACTTGCCATTTATTATGGCTATACGGAAAACTCAAGAGTTGGAATGGCAGAATTCCAGCAGCATGGAGGACGCTGATGCAAATGTGTATGAGGTAGAAGAGCCGTATGAAGCTCCAGATGGCCAGCTGCAGCTTGGACCCAGACATCAGCATTCCAGTTCAGGAGCATcccaggaggaacagaatgatcttggtcttggtgaccttccctctgatgaggaggaaatcatcaacagttctgatgAAGATGATGTCAGCTCTGAGTCAAGTAAAGGAGAGCCTGACCCACTGGAAGATAAACAGGATGAAGATAATGGAATGAAAAGTAAAGTTCATCATATTGCCAAGGAGATCATGAGCTCAGAGAAAGTGTTTGTGGATGTGTTAAAACTTTTGCATATTGATTTCCGGGATGCAGTAGCTCATGCTTCCAGGCAACTTGGGAAACCAGTGATTGAGGACCGGATTCTAAATCAGATCCTATACTACTTGCCTCAGCTGTATGAGCTCAACCGGGATCTCTTGAAGGAACTGGAGGAAAGAATGTTGCACTGGACTGAACAACAAAGAATTGCTGATATCTTTGTAAAGAAGGGACCATATCTAAAAATGTATTCCACATACATCAAAGAATTTGATAAGAATATAGCCTTGCTGGATGAACAGTGCAAGAAAAATCCAGGTTTTGCTGCTGTTGTTAGAGAATTTGAGATGAGCCCTCGCTGTGCTAATCTGGCCCTCAAGCACTACCTGCTCAAGCCGGTTCAGAGGATCCCCCAGTACAGGCTGTTGCTGACAGATTATTTGAAGAATCTCATAGAAGATGCTGGAGATTACAGAGACACTCAAGATGCCCTTGCTGTTGTTATAGAGGTAGCCAACCACGCCAATGACACCATGAAGCAAGGAGACAACTTTCAGAAACTTATGCAAATTCAGTACAGCTTAAATGGACACCATGAAATTGTGCAGCCTGGTCGGGTTTTTCTCAAAGAAGGAATTCTGATGAAGCTGTCTCGGAAAGTGATGCAACCTCGAATGTTTTTCCTGTTTAATGATGCCCTGCTGTATACAACACCAGTGCAGTCTGGGATGTATAAACTGAACAACATGCTCTCACTGGCTGGAATGAAGGTCAGAAAACCTACCCAAGAAGCCTATCAGAATGAATTAAAGATTGAAAGTGTAGAACGTTCCTTCATTCTCTCAGCCAGTTCTGCCACAGAAAGGGATGAATGGCTAGAAGCGATTTCCAGGGCAATAGAAGAGTATGCCAAGAAAAGAATCACCTTCTGTCCTAGTAGGAGTCTTGATGAGGCAGACTCAGAAAATAAAGAAGAAGTTAGTCCTCTTGGATCGAAGGCTCCCATCTGGATTCCTGATACCAGAGCCACAATGTGTATGATCTGCACAAGCGAATTCACTCTCACCTGGAGACGACACCACTGCCGGGCCTGTGGAAAGATTGTATGCCAAGCTTGTTCGTCTAATAAGTATGGCTTAGATTACCTGAAAAATCAACCAGCAAGAGTATGTGAACATTGTTTCCAAGAACTGCAGAAATTAGATCACCAGCACTCCCCTAGGATTGGATCTCCTGGAAATCACAAATCTCCTTCAAGTGCCTTATCATCAGTCTTACATAGCATTCCATCAGGGAGGAAACAGAAAAAAATCCCAGCTGCTCTCAAAGAAGTATCAGCAAACACAGAGGATTCTTCTATGAGTGGCTACTTGTACAGATCAAAGGGCAATAAAAAACCCTGGAAACACTTTTGGTTTGTCATAAAAAATAAAGTACTATATACATATGCTGCAAGTGAGGACGTGGCCGCTTTGGAGAGTCAGCCTTTATTAGGATTCACTGTTATTCAAGTTAAAGATGAGAATTCCGAGTCTAAAGTATTTCAGTTACTGCACAAAAACATGTTATTTTATGTATTCAAAGCAGAGGATGCTCATTCGGCTCAGAAGTGGATAGAAGCATTTCAGGAAGGCACAATATTGTAGCAGTATTGGTTTCATCTCTTCTGTGATTCCAAAGAGGTGGAATTTCATCAGAATGGAGTAAATGCAATTCAAAAATTGTATAAAAATGAACACTGCCAAGATAAAGCCAACCAGACCCTTCATCAAAGAAATTGTTTTGTTAGGTATAAGCAATTTTTAAAAGGTGTTTGTTTTTTCATTTATGTTATTTATTAAAATTTTGATGTTTACTTAATGGTCAGAATTATTTCTGAGACACACTGAATTCTAAAGTACCATTTCTTTAGAGACCAGAAAAACTATCTTAATACTGTATACTGTATTAACTATTCGTGACATAGTTCACACTGTTTTCTTACCTTACATTGTAACAATCTTACTGGTGGAAAGTCTTTGTAAGGAAAAAACACATAGCAAGGAGCAAATTTCCACAAAGTGCTTGGTTTAGGAATTGTGATTATTATAAAACTGCTGATGAAAAAAATGCATGTCTTTGAATCAATAAACTTGGGTGAATATTTGTATCTTTTAGTGGAAAAACATGGCCAGCTTCTACCTCAGTAACTGTGAACTGAAATTTCAGTAAATTATCTAAAGTATTTCTGTTGTTAGGTACCTCTTTGGCAGGAGTTAATATTACATCATCAAAGAATTATAGCAAAGAGATAGAATCTGAATTTTTTAAAACTGTGAGTAGGAATGAAGATGTTTTTATTTGCAGAATACCACAAATAACCAACTCTTCCGGCTTTTAAGTCCAATCTTTTAAAAAATCTACCACTTCGAAACAAACATAAATGTATCATTTTTTAAAATAGCAAAATATAGCAAGCATTATGTCACATAATATTCCCTGCTATTATAAGAGTTCTGAGCCCAAGTCAATGATGATATTTGTATCTATAAGTAATGTTACATTTCCAAAAATATTGTGCATTACAAATGGAACTGGAATTACTATATCAGAAAAGCATAATTATAAGCCAGTAATAACTGAAATTCTATAGTATTCATTTTCAAAAGGTCTTTTTCTGCCAGTTTGTGATATCCTCCCTCCTAATTAAAAAAAAAAACAACAAATCCTTTCTCTATAAGCAGCTATCAGCACACCTCCTTAGGAAAGATTTAGATTCATAATTCTGGTGCACTTACTGTTTAACATATGAACTACCTTGCACATACAATTGTTGATTAGCAGAAGAAAATGAAATAACACTGTGATAAAAGCCATCCCTGATGTTCACAATACACAATTTATTAACTAAGTTTAAACTATAAATTATCTTAACTgccatgagcggtggctcacacctacaatctcagcattttgggaggccgaggccgttggaccacctgaggtcaggagatcgagaccagcctggccaatatggtgaaaccccatctctattaaaaatacaagaattagccggtcgtggtggtacatggctgtagtcctagctattcagcaggctgaggcaggagcatcgcttgaacccaggaggcagaggttgcagtgagccgagatggtgccactgcactccagcctgggatgacagagcgagactccatctcaaaaaaaaaaaaaaaaaaaaaaTTGAACAGCAAGGTTATCCATATAATATTTCTTTAAAGGGTACAAGAATTTTCCTTTCTGCCTCTAAATAAAGGATTTCCTAATTCAGTGTGATCCTTAACAGCAACCATGAGGATTACTGAGTGCCTTTCTGGGGCCTTTTGAATGCTGTTTGGTACAGCACCAGAGTCCCTACTAGATCTAGAGTTGGCTGCTATAGTTTTTTGTGGCGATTTTTTGCCATGGAGTCATTTGAACCTCATACACAATCCTAACATGCCATCCCCTTTCTGTCATAGCAGGTACACTAAAATTTCTTTGTAGCTCAATTTTATATAATCAAGATCACATAAATAAGGCTTCCATGTTAGAATCGTTGCAGTTTTTAGTGTATTCCTTTTTGGAGGCTAAAGTTGTACCTTATAAACTGTTTCTGCGTCTGGCATTTAGCAAGACAAGTTATTTGGGTTTTCTTTCCCTCCTCTTGAGCTCTCAGCCTTCTGACTACAAGGTTTGGCTTAAGCCTTATAATCTAAAAAATATCAGCCAGGCTATTCTATCTTCTAAGACCTGGCTGAATCATGAGCCAGTTCTAAATCTAAAGAGAGTGAGAGAGGGAAGAAATCTGGCACAAACTTACAGTCTCTTTAATTACATGTAAAATGCATGTGACTGTATTACCTATTGGCTTAGCCCCATGGAGGGTTTAGAAAAATGTGTAGTCTTTGTGGAAGCTATCCAATTATCCTTCTCCCAAAAAGATGTTTTAAATGTGGAATAGTATTACATTCCCCTGCCCCTTTATGAGTCCTTCATAACTTACTAAAGCTGACCAATTGTTATTTATGTAACCTGGCTCATTCATTGTCAACTAAGAACCTAATTATATGCAATTTATTGTAAAAAAAGCTATAAAAATATATTTTGCTAGTATTTTAGAGGAAAAATGATATTGGGCACAGTCTATAAATGGGGAGAAAAGTTAAGTAGTATCTAGATTCCAAGGATACTATATTTATTATACAGATATGTGTGCCTGTGCTTCCATCAAACCCTTTTTCAGGTATCTCCTTTTAATTCATAAGGAGGAAAGAGTAGGGCATTTATAAAGCTAAGCTAAAAATGATGCTAAGCATAACGTAGATGAGACGCCAGGCTGAACCAGGGGAAGGCTGGCATTGTTAGTGTCCCCAACTAGCAGTCCACCTTTATCTGTGGCAGCTATAAATGTACAGGACCCATCAGAGTCCTAAGAAAATGAGAGTAATTATCTCTGGCATCATCCACATTTCCGACTCTTTCCAATCTCTTTTCCCTTTTTCTGTAATGTACCCAGCATCCCCCTATTGTATTTTGGTTGCCCAAGATTCTTGATTCTTTGAGTGTGTAGTAGCATTTCTTAAAATGAGATCATCAGACCAACCCTTGATTCACATGAAAGCTGTAATGACACAACAAAGAGAAGGCGACAGTTTTAAAGTATAATTGTCAGCCAAATGTGTATTTTATATTTGGTTCATAGAATATATCTAGATGTGGGGAAAGTCTCCTATTTGGTAATTTAGTTAAAATGTAAATGTTATATCACAGCATATGTTGGTATGTTTTGGAGTGTGCTTCCATTGTGCTCAGCTTTTGAAAAGTTTGAAATCCACTTTAGTCAAATGTAGTCAATGGGATTTCCAGAGATACATATTGTTTTTCTTAGTGTACCACACACTCCTTGAAGGCAGATACTGTACTTAATATATCACTGTCTTCCATAATACTGCCCTAGGtctttttagtttttaagagaccgggtctcgctatgtttcccatgctgaactcaaatgcctgggcttaagcaatcctcccacctcagcctctggagtagctgggactacaggggcatgcaccaccaggcctggcTTCCTAGGAGGGTCTTTAAAGAGAAAATATTTGTTCAATTGAAAACAGGATTCTTGTCATCTACAACTCCAACACAGCCTGAAAATATCCACATTATAACCTGGACCTTAGACCTACTTtctccactatcctgcaaagctacatctgtaactacctattggctatctatatgagtcctcaagcatctcagactttacatgaataaaactcaacttccttcccattcaaatctgttTATTTTCTTCTGTAAGAGAAAGATACCATTTGAGACTCCAGAATCTGCCTCTAACTCTCAACAAGACTCTGCAATTACTCAAGTATCCTTTCCATCCTCATTGCCCTGCTGTTATTACATAGGCCCTGGTTCAAGTCCTTGTTACTTGTTCCCATTATTGCAATAACTTCTAATTCCAATGCCGTTGTGTGATCCCATTTTAAACACGGCCAGAGCAGTCTTCCAACAACATAGCTCTAATCTAGTTTCATCCCCACTTTTACATGCCTCAGTGGCTTTCCCAGTGACTTGGCATGGAACACGTCCTCAGTTGCCATACATTCCAGCTAACTCTTACCCAACCTTTCTTTGTTCACACAGTTTCCTTTTCCTTCCTCATTGACCCATCCGCATCTCTGTTTATCCAAGACTTCTCTGTGATAGCTGACCCTTAGTCTTTCTCTCCCCTATTCCTCCAGACTAGATCCTGTCTCCTTCCTGCAGCCCCGACACAGCCTTCAGTTCATATCTTTTGCATGATGCTTAGCACCTTCTATCCCTAAGGACAACTTACTCATTTGAGATTTCTGGCAGGGTACCTTGCATGCAGTGGACACTCAGTATTTGCTGAATTAAATTCCTTCCTATGGATCCCTTCTGATTTTTTTTAAGTGCCTCTAATACACATATCATTCTAGGGCTCATGCCACTTTTAATGTCATTTTCTAAAGGAAAATCTTATCTATGATATTTTCCCTTATAAGAGATAGTTGTTTTGAGTAGGGTTTTTTAAAAGATAAAGGTAGTAGGAAATTTTTTAAAGCCTAAATATCAAATTCCTTTCCCTTTGGAGTTGGGGGAAGGAATGAAGGGGGAGCAACTTGCTCTTTCATATGAGTTGGTCATAGCATGTAAGAACCAATCTTGAAATATCGTTTTTTTTTTAATGGCTTATAATGTATTTCTAGAAATACTTTGTACTTAAAATGATAACAGTTTGTATCTTTTTGTCCATATATACTTTATAAATAAAAAAATTAGCATTGTAAATAATGTTAATATGTATTTATACAAAATAAATTTACTATAATATA

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