Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name ERV3-1-ZNF117P1
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr12:57966954-57969139  UCSC
Coordinates (T2T) chr12:57935633-57937818  UCSC
Coordinates (hg19) chr12:58360737-58362922  UCSC
Strand +
Parental Sequence NM_001348050.2
Parental seq. overlap 1866 bp
Parental seq. overlap (%) 22.6%
Genomic Region Intergenic
Retrocopy Summary ERV3-1-ZNF117P1, located on chr12:57966954-57969139, is a retrocopy of the parental gene ERV3-1-ZNF117. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ERV3-1-ZNF117
Full Name N/A
Also known as h-PLK
Coordinate chr7:64971776-65006746
Strand -
Gene summary This locus represents naturally occurring readthrough transcription between the endogenous retrovirus group 3 member 1 (ERV3-1) and the zinc finger protein 117 (ZNF117) genes on chromosome 7. Readthrough transcripts may encode the same protein as the ZNF117 gene. [provided by RefSeq, Jan 2017]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes LOC468808P2
Bonobo Pan paniscus ZNF681P2
Gorilla Gorilla gorilla LOC101127741P1
Orangutan Pongo abelii ZNF681P1
Green monkey Chlorocebus sabaeus LOC103234271P5
Crab-eating macaque Macaca fascicularis LOC102132491P1
Rhesus Macaca mulatta ZNF430P1
Baboon Papio anubis LOC101011283P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104669300P1
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ERV3-1-ZNF117P1
TCTCTGTTTCTTCTGCTTCTAGAGGCCCAGCCTCTGTGGCCCTGTGACCTGCAGGTATTGGGAGATCCACTGCTAAGATGCCAGGACCCCCTGGAAGCCTAGAAATGAGATCATTGACATTTAGGGAGGTGGCCATAGAATTATCTCTGGAGGAATGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGAATGTGATGTTAGGGAACTACAGAAACCTGGTCTTCCTGAGTATATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGGaGCCCTGGAATATGAAGAGACATGAAATGGTAGCCAAACCCCCAGTTTTATGTTTTTCTTTTGCCCAAGACCTTTGGCCAGAGTAGGACACGGAAGTTTTTTTTCCAAAAAGTTATACTGAGAAGATATGGAAAATGTGAACATTAGAATTTACAGTTAAGAAAAGTTATAAAAGTGTGGATGAGTGTAAGGTGCACAAAAAAGGTCATAATGGACTTAACCAGTGTTTGACAACTAATGAGAGCAAAATATTTAAATGTGATAAATGTGTGAAAGTTTTTTTATAAATTTTCAAATTCAAATAGACATAAGATAAGACATACTAGAAAGGAATCTTTCAAATGTGTGTCAAACATTTTGCATGCTTTCACACCTAATTCAACATAAAAGAATTTACACTAAAGACAATTCCTACAAATGTAAAGAATGTGGCAAAGCCTTTAACTGGTCCTCAGGCCTTACTAAACATAAGATAATTCATATTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCGAAGTTTTTTAACCAGTCCTCGCACCTTACTATTCATAAGACAATTCATACTGGAAAGAAACCCTACAAATGTGAAGAGTGTGGCCAATTTTTTAACTGGTCCTCACACCTTACTATACATAAGTAATTCATATGGGAGAGAAACCCTACAAACGTGAAGAATGTGGCAAAGGCTGTTAACCAATTCTCAAACCTTACTAAACATAAGAAAATTTATACTAAAGAGAAAACCTCCAAGTGTGAAGAATGTGGCAAATCCTTCAGTGAATCCTCAATTCTTAAGAGACGCAAGATAATTCATACTGGAGAGAAATTCTACAAACCTGAAAGATGTGACAATGCTTTTGGCAACACTTCAAACTTTTCTAAACATAAAATAAATCATACTGATGAGAAATCCTAGAAATGTGAAGAACGTGACAAGCCTTTAAATGGTTGTCACACTTGATTATAGGTCGGATAATTCATAGTGGAGAAAACTCCTACAAATGTGAAAAATGTGGCAAAACTTTTAACCAATCCTCACACCTTATTGCACAGAAAAGCATTTATACTTGAGAAAAAATTAACAAACAAAAAGAATGTAAAAAAGCCATTAATATCTGTTCACATCTTACTATCAGAGAGTTCATACTTAGTGAAAGCATTGTAAGTGCAATTACTGTCAAAAATGTTTTTCAGAAAATATAAGCTTTTAAAGTGAAGAAAACTATGTATTTTGAAGACAACATTATAGATATAAAGAAGGTTGTAGCACCTTTACTTGTATCACAGATCTTATTGTACACATTTTTACTACAAGAAGAGCCTGAAGCAGTTGCTTAAACTTTGTTCAACATCAAAGAATTTATATTGAAGAAAAACCCGGCAAATGTAATAAATTTGGAAAAACATTTTTTTAATAACTACAGCTTAAAAAATACCAGAGAGTTTATACTAAAATATAATTTTGCAGATGCAGTAAACTATGTAAATATCAGAGAATTCAGAGTAGAAATAACTAAGGCACCAACACTTCAGACATTACACTAAATCAGAGTACTGAGTAGAGAAAATAATCCAAAACCAAAGCTGGTAGACAAATTATTTGTATATAATGAAAAAGGAGTAGAAGATTTTTTGAAGAGTTATAATTATGTTTAAAGTATACTTTTTTTGAAAAATCTGCTACTTTAAAAAAAAATTCAATAATGATATAATTCAACTCTAAAATTACTTCATGCTGTTTCTTCATTCCTATTGTGTTTACATGTGAAAGCATGTGATAAATTGTTTCTGCATTAAAGACATGACAGATTCTTTTTTATTAGGTGGACATTATTTATGACCTTTTCTATGGAGGAGTAATGACATTAAAATGTAAAATGCATGAT
>NM_001348050.2
GTCCAATCAGGCACTCAGCTGGAGCAGACAGGACGGCTTCCGGGTTTGGTGGGGCCTTTGTCTCTGGCGGCAGCCGGAGCTTCTGGTGTAGTCTTCACTGCTCTGTGTCTTCTGCTCCTAGAGGCCCAGCTTCTGTGGCCTCGTTACCTGCAGGTATTGGGAGATCCACAGCTAAGACGCCAGGACCCACTGGAAGCCTAGAAATGGGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTTTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGCATGTGATGTGAGAGAACTACAGAAACCTGGTTTTCTTGGGTGAAGGTATTGCTGTCTCTAAGCCAGACCTGATTACCTGTCTGGAGCAAGGAAAAGAGCCCTGGAATATGAAGAGACATGAGATGGTAGCTAAACATTTAGTTATGTTTTATTATTTTGCCCAACACCTTTGGCCAGAGCAGAACATAAGAGATTCTTTCCAGAAAGTGACCCTAAGAAGATATAGAAAATGTGGATATGAGAATTTACAGTTAAGAAAAGGCTGTAAAAGTGTGGTTGAGTGTAAACAGCACAAAGGAGATTATAGTGGACTTAACCAATGTTTGAAAACTACCTTGAGCAAAATATTTCAATGTAATAAATATGTAGAAGTTTTCCATAAAATTTCAAATTCAAATAGACACAAGATGAGACATACTGAAAATAAACATTTTAAATGTAAAGAATGTCGCAAAACATTTTGCATGCTTTCACACCTAACTCAACATAAAAGAATCCAAACTAGAGTGAATTTCTACAAATGTGAAGCATATGGAAGAGCCTTTAACTGGTCCTCAACCCTTAATAAACATAAGAGAATTCATACTGGAGAAAAACCTTACAAATGTAAAGAATGTGGCAAAGCCTTTAACCAGACCTCACACCTTATTAGACATAAGAGAATTCATACTGAAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACCAGTCATCGACCCTTACTACACATAATATAATTCATACTGGGGAAATTCCCTACAAATGTGAGAAATGTGTTAGAGCTTTTAACCAAGCCTCAAAGCTTACTGAACATAAGTTAATTCATACCGGAGAGAAACGTTATGAATGTGAAGAATGCGGCAAAGCTTTTAACCGATCCTCAAAACTTACTGAACATAAGTACATTCATACTGGAGAGAAGCTGTACAAATGTGAAGAATGTGGTAAAGCCTTTAACCAGTCCTCAACCCTTACTACACATAAGAGAATTCATAGTGGAGAGAAGCCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAAACAATTTTCAAATCTTACTGACCATAAAAAAATTCATACTGGAGAGAAACCCTACAAATGTGAGGAATGTGGCAAAGCTTTTAACCAACTCTCAAACCTTACTAGACATAAGGTAATTCATACTGGAGAGAAACCCTACAAATGTGGAGAATGTGGCAAAGCCTTTAACCAGTCCTCAGCCCTTAATACACATAAGATAATCCATACTGGAGAGAATCCCCACAAATGTAGAGAATCTGGCAAAGTTTTCCACCTATCCTCAAAACTTAGTACATGTAAGAAAATTCATACTGGAGAGAAACTCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACCGATCTTCAACCCTTATTGGACATAAGAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACCAATCTTCAACACTTACTACACATAAGATAATTCATACTGAAGAGAAACAGTACAAATGTGATGAATGTGGCAAAGCTTCTACCTGATCCTCAAAACTCATTGAACACAAGAAAATTCATACTGGAGAGAAACCTTACAAGTGTGAAGAATGTGGCAAAACTTCTAACCATTTCTCAACCCTTACTAAACATAAGATGATTCATACTGGAGAGAAGTTACACAAATGTGATGAATGTGACAAAGCTTTTAACCAATCTTCAACCCTTTCTACACATAAAAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAGAGCTTTTAATTGATCATCAAACCTTATTAAACATAAGAAAATTCATATTGGAGAGAAACCCTACAAATGTGAAGAATGTGGAAAAGCTTTTAACCAGTTCTCAACTCTTACTACACATAAAATAATTCATACTGGAGAGAAACCATATAAATGTGAAGAATGTGGCAAAGCTTTCAACCTATACGTAAACCTTACTACACATAAGAAAATTCATACTGGAGAGAAACCCTACAAGTGTGAAGAATGTGGCAAAGCTTTTAGCCAAGTGTCAACTCTTACTATACATAAAAGAATTCATACTGGAGAGAAACCCTACAAGTGTGAAGAATGTGGCAAAGCTTTTAACCAAGTGTCAACTCTTACTATACATAAAAGAATTCATACTGGAGAGAAACCTTACAAATGTGAGGAATGTGGCAAAACTTTCAGTCGATGCTCAAAACTTACTACACATAAGAAAATTCATACAGGAGAGAAACCTTACAAATGTGAAAAATGTGCTAAAGCTTTTAGCCAGTCTTCAACCCTTTCTACATATAAGATAATTCACACTGGAGAGAAATGCTACAAATGTGAAGAATGTGGCAAAGTTTTTAACCGATCTTCAAACCTTACAGACCATAAAAAAATTCATACAGGAGAGAAATCCTACAAATGTGAAGAATGTGACAAGGCCTTTAACCTGTCCTCAACGCTTACTAAACATAAGGTAATTCATACTGGAGAGAAACTGTACAAATGTAAAGAATGTGGTAAAGCTTTTAAACAGTTCTCACACCTTGCTATACATAATATAATTCATACTGGAGAGAAACTCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACTTATCCTCAAACCTTACTGCACATAAGAAAAATCGTACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTAACCTATCATCAACCCTTACTCCACATAAGACAATTCATATTTGAGAGAAACCCTGCAAATGTGAAGAATGTGGCAATGCTTGTAACTAAATCTCAAACTTTACTAAACATAAGAAAATTAATACTGGAAACTTTACAAACCTGAAAGATGTGACAATGATTTTGACAACACCTTCAAACTTTTCTAAACATAAAATAAATCATACTGGTGAGAAATCTTAAAAATATGAAGAATGGTACAAAGCCTTTAAATGGTTGTCACACTTGATTGTAGGTAAGATAATTTATACTGGAGGAAACTCCCAGAAGTGTGAAGAATGTGGCAAAACTTTTAATTTTTCACACCTTATAGCACAGGAAAGCACTTCAGAAAAATTGTACAAATATAAATGTGGAAAAGCCATTAATATCTGCTTACATCTTACTCAACATTAGAGAGTTAGTGCTTAATAAAAGCATTATAAAAGCAATTAGTGTAAAATCAGAAAATGAAAGttttttttttttttttagatggagtcttgctctgtcacccaggctggagtgcagtggtgtgatcttggctcactgcaacctctgcctcccaggttcaagcaattctcctgccttagcctccagagtagctgagactacaggcacacaccaccacatttggctaatttttttatttttagtagagactggctatcaccatgttggccaggctgatcttgaactcctgacctcaagtgatccacatgcctctgcctcccaaagtgctgggattataggtgtgagtcactgtgcctgacAAATATAAGCCTTTAAAGAGAAGAAGGTTTTCATTTTGAAGACAAACATTAGGTACATAAAGAGGGTTGTAGTGTCTTTATTTGTATCACAGATTTTATTGTACACATTATGTACTAAAGGAAAATCCTGAAGCAGTGCTCAAACTTTGATCAACATCAGGGAGTTTATATTGGAGAAAAACTGCAAATGTAATATATTTGGAAAAACATTTTTCAAAAACTACTGCTTAGAAAACACCAGGGGATTTATACTAAAATATATTTTTGCAGATGCAGTAAGTATAAAAGAAATTTAATCCAAAATTAAGTGTGTGTAAATATCAGAGAATTCACAGTAGAAATATCTAAGGCACTGACATTTTAGACATTGAACTAATCAGTGTGCTGAGTACAGAAAATAATCCAAAATTAAAGTTGGTAGATAAATTATTTATATATAACTTTAAAAGAGGTAGAAATATTTTTAGTTATAATTACATTTAAAGTATACTTTTTTCTTTGAAAAAATTACAAAATTTTTAAAAAGTGAATGATGTAATTCAACTCAAATTACTTCATGCTTTTCATTCTATTGTATTCACATGTGAAAGCATGTGATCAATTGCTGCTTCATCAAAGATATGAGACATTCTTTTTTGTTAGGTGGGCAATATTTTTTACCTTTTCTATGGAAGAGTAAAGACATTACAATGTAGGATGCATGATAAAAATCTAAGTGGAGAGGCTCTTTGTGTTTAATTTATAATATTGAATGATGTATGAGGGAAGTGTTCAGAGGAATATTCTGCATTCTAGTGAAAATATCTTTTATTTTAGTTAAAATTAAATTAAAATTAGTAGTATATCATTTTACTAACTGTACTTTTATGTAATAAAATGCAGCACATTTAAAAAATTTTAGATTATTGTGAACTTAATTTTTTAATTAAACTTTTTTTTTAACATGTTAAGACCAATTGTGCATTCAGTGAAGTATTATCATGCCACTAACTTCAACCTATCCCACCTTACTCAAGGGTGTTGGTAAAAGATAGTAACAATGTACTATTTAATAACAGAGTGGACTAACATCTCTAATAATTTCTCTTGCCAGTGACTTTAAACTAAAGAACTTAATTAAAGAACATTGTTCCCATAGGTTAAATTTTTATTCTTTTTCTTATTTAAACATATTTttcttaacttttgtgggtacatagtgtgtgtatatatttatgccatatatggcatattttgatacaggcatatgaataggtattaatcacatcagggcaaatgaaatatccatcaactccagcatttatcatttgtattacaaaccgattctacacttttagttactttaaaatgtacaagtaaattgctattgactatagGGTCATTTTCATGGGTATAATAAAAATTATATACAAGTATAAATAAAATCCTGAGTCTTAAAATTCTGAGTCCTGCTTAAACATTTTAAAAATTTTGTTATGTATTTTTCTTTGAACATGTCTCTCTGCCTGCAAACATAACAGAATTTTAGTATTGGTTTACATAGAGTTAACTATACCCATATATTACTCTAAAAATAAATGTTAAGTGCAAGAAAGTTATGGACTGTTTTTGTGTGAGTGTGAGTTTGTACCTATTTTCAAAAGAAAAGAGCAATATTGGAGCAAAACAAATATTTTAATAAAGTAATGTACTAGACAACTGAAAACTTCAAAAATGCTGAAAGTAAATGTATACTCTGCTTTGTATTGAATTCATTACTGCCAAATCTTCTGACTTATGATTCAGAATCTCTCCATGCAAATTATGTTTTTACTTGCCTGTTAGTCATGCTAGACCTATAATTTTCTTGTTTCTTACCATTTTTTTCTTTTATACTTTATGAGGTATTATGTGAGCTGTTCATGGATTATAAGAATGATTTTTATAAAATTCAGTACTGCACACAAGATAAGTTTTAGATGTATTTCCAAAATTGTGTATTAATTATATTTAGTTAGAACATTCCATTTGTTCTTTTAATTGGAGAATCCTATATAAGCCTATATTTCTTATTCTTTTCTCTTGTTATAATTGACATAAGTAAATTTATTTATTTATTGAGCCAATTTGTTCAGGTAAGAACTAGGAATGCTTCATAAGTCATGAGGATGTTTTTATATATATATGTGGCAAACAAATATGACAGTGCTTGCTGTGTAACAGATGTTCCATAATAACCTGTAAACATTCCTGCTGGAGTTAGTTTGTAACTTCAAGTCAGAGATGGAAAATACCAATAGTGAAGAAATAACATTGATTCTTCATGTGCAGATAACATTTTTTTTCCATGCTGCAAAGCTAAATTTTGCTGAATTTAAAAAGAAATTTTGGTTCTTTTATTTCCTAATTACCTTTAGTTTTGTTTGTCTTATTATGTGACTTCTGTGTATTCATCACAGCCCTTCTCCTTCTTTTTCTATGTGATGGCTACACTTTGCTCACTGTTGTCTTCATGCCATGTCATTTTATACAGTACTTTGTAGGTTTTGATGAGAAAGTTGGTATTTTTAATGCACTCAAAAATTGCTTTTTATTGGAGAGTACTTATCAATATAACTTTCTGATCAGTTAATTAAGATAAAAGGCATACATTGTCCACAGGTGAGAGGATTAAATCAGTTAGCATTATTTTTTTCTGTTTGTAAAAGGAAAAACTTATTAAATTTTTAAACGGAGTTATTaaacagagtttcactcttattgcccaggctggagtgcaAATATATTGTGGCAAATATAAAATTTGCTAGAAAATACATCTTAGAAATTAAGTTATAAGAGAGCAAATGGTAAGTGAAGAATTTTAAATTTAATTTTCTATGATATAGCATAACATACATTTCCATGCAGAATCTTTTATTTTTAAATGTGAAATTTAAAGGTTGCAAAATAATAAAATGACTTCTGTGGATTTGATATTTGGAATGATATTTCTTTTTTATATTGATATTACAATTCCGAGGAATTTTTCACTCATTATTTTTTTAGTGGGTGAAGGTGAGTGTACAGTTATTGCTTTTTGTCACCTAACTATAGTCAGCTTCTTGGTCATTTTCTCTAGAAAACTTTTGAAGATTATGGCAGCTTTTTGATTAAACATTTTCTGTTATTTTTATGCAAATTCATTTATTGTGTTCACAGGGTGGCCAGTCATGAGACCATAAGCAACAGCTGCCCTTTTAGTGTCTTTCATGCCATTACCATCTGtaataaataaatgtgtactttattctgcaaaacatgatgtttggaagtatatgttgtcaaatgcttaattctaggtaattaaggctttacctcacatcgttaacatttttgtggtcagagtatgtgacattgtcaatgtttttcaaaaacacaactacattattatgatctgtagtcactatgctgtacaaaaagatctcttaaacttattcctcctattaaactataattatgtattctttgaccaacatcttccaaaaccccccttttttctaaataccttggtgtctggtggtcaccactttactctctactttaatgggattaagtttcttagaatccctgtgtaagtaaaatcatgaaaaataatctttgtgtctggctcatgtagacaaatatgatgtcctccaggttaattcatgtgattgaaaataatagaaatttcttttttaaagacgaagagtattccattgtgtatatgtaccacattgtctttatttactcataaatgttgaactgttgattgtgtattttggtaattgtgaagagtgttgcaaacaacatagaagcataaatgtttcttcattctgatttcacttgttttggatatatacagtaaaattgctgtattgtggtttaattttaaattttttgacaaatttttgtttttcatagtgactctcctcattcacattcaaaccaacagtgtgcaagcattccttttcttcatactttgactaacactttcttttctttttagtaagagtaattctaacaggagtgagttgataatctcctggtttttctttttgctttcctgattatagttgatattgagcattttttatatatcttgaccatttgtcttttcttgaaaaatatttaagccttttgctcatttttaatagttatttgtcttctgttgtatagtcatttaagttgtttatatgtttctgttattaaccctttgtcccacgtatgatttgcaaatattttctcccatttttttcagttgtctcattttgttgattgtatcagattccatgaagcagctttttaatttcaagtaatctaacgtatctatttttcttttgatttccttggattttgaggttaaataataaaagtcacagcctaga

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