Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name RBMS1P1
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr12:66233019-66235620  UCSC
Coordinates (hg19) chr12:66626799-66629400  UCSC
Strand -
Parental Sequence XM_024453033.1
Parental seq. overlap 1709 bp
Parental seq. overlap (%) 37.6%
Genomic Region Intragenic (IRAK3)
Retrocopy Summary RBMS1P1, located on chr12:66233019-66235620, is a retrocopy of the parental gene RBMS1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RBMS1
Full Name RNA binding motif single stranded interacting protein 1
Also known as C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1
Coordinate chr2:160272151-160493983
Strand -
Gene summary This gene encodes a member of a small family of proteins which bind single stranded DNA/RNA. These proteins are characterized by the presence of two sets of ribonucleoprotein consensus sequence (RNP-CS) that contain conserved motifs, RNP1 and RNP2, originally described in RNA binding proteins, and required for DNA binding. These proteins have been implicated in such diverse functions as DNA replication, gene transcription, cell cycle progression and apoptosis. Several transcript variants, resulting from alternative splicing and encoding different isoforms, have been described. A pseudogene for this locus is found on chromosome 12. [provided by RefSeq, Feb 2009]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes RBMS1P1
Bonobo Pan paniscus RBMS1P1
Gorilla Gorilla gorilla RBMS1P1
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RBMS1P1
TGTCTTTCTTTCAATGCAGTGTGAAGTGTCTTATCCTTTTCTATGAATTCCAATTTGCCTTAACTCTTTTGATGCTGTAGCTGTTTCAGTAAAAGTTAGTTCAAACTAATGATGTAGAATGCTTTGACCAGATGAGCTGGTCTATTATGCCTTGTAAAACAGCAGCATAGGGCTTTTAAAAGGTAGTCAATAAAAGTTGCTGAAATTTTGGCTTTTTACTTCAATTTTCTGGGTATGCACAAAGACCGTGAAGACTTATCCAAGTGCATGACCGGATTTTTGTGGTTTTGTTCATTTTGTGTTTAATCTGTGTTTTTTTTTTCCAGCTGTATGAAATGGGCTTTCTGAAGTTTAACTAGTCCGACTTCACCCATGGTGTTCTGTGCTTGCAGTGCGAGTGTTGCTGTAATTCAGTGTTGCCGTCAGTGTCTCTCTTCTTAGCTTTCCGGCCACTCAGGATGGGATCAGCTCAGCAAAACGAACCTCTATATCCGAGGACTGCCTCCCCACACCACCGACCAGGACCTGGTGAAGCTCTGTCAACCATATGGGAAAATAGTCTCCACAAACGCAATTTTGCATAAGACAACGAACAAATGCAAAGGTTATGGTTTTGTCGACTTTGACAGCCCTGCAGCAGCTCAAAAAGCTGTGTCTGCCCTGAAGGCCAGTGGGGTTCAAGCTCAAATGGCAAAGCAACAGGAACAAGATCCTACCAACCTCTACATTTCTAATTTGCCACTCTCCATGGATAAGCAAGAACTAGAAAATATGCTCAAACCATTTGGACAAGTTATTTCTACAAGGATACTACGTGATGCCAGTGGTACAAGTCGTGGTGTTGGCTTTGCTAGGACGGAATCAACAGAAAAATGTGAAGCTGTTACTGGTCATTTTAATGGAAAATTTATTAAGACACCACCAGGAGTTTCTGCCCCCACAGAACCTTTATTGTGTAAGTTTTCTGATGGAGGACAGAAAAAGAGACAGAACCCAAACAAATACATCCCTAATGGAAGACCATGGCATAGAGAAGGAGAGGTGAGACTTACTGGAATGACACTTACTTACGACCCAACTACAGCTGCTATACAAAACGGATTTTATCCTTCACCATACAGTATTGCTACAAACCGAATGATCACTCAAACTTCTATTACACCCTATATTGTATCTCCTGTATCTGCCTACCAGGTGCAAAGTCCTTCTTGGACGCAACCTCAACCATATATTCTACAGCACCCCGGTGCCGTGTTAACTCCCTCAATGGAGCACACCATGTCACTACAGCCCGCATCAATGATCAGCCCTCTGGCCCAGCAGATGAGTCATCTGTCACTAGGCAGCACCGGAACATACATGCCTGCAACGTCAGCTATGCAAGGAGCCTACTTGCCACAGTATGAACATATGCAGACGACAGCGGCTCCTGTTGAGGAGGCAAGTGGTCAACAGCAGGTGGCTGTCGAGACGTCTAATGACCATTCTCCATATACCTTTCAACCTAATAAGTAACTGTGAGATGTACAGAAAGGTGTTCTTACATGAAGAAGGGTGTGAAGGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAATTTTGCACAAGTTCTTGAAAACGTTATTTATAACGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAAACCTTAAATTCATCTAGTAGCTGTTCCCCCGAACAGGTTTATTTTAGTAAAACAAACAAACAAACAGATTTTTATCAAATGTTATGATGCGGACGCGGCGGCGCTGCTCCTCCGCTGCCGCCGGGAGAGTCGGCGACGCCGCCAGCTCCGCGCGCGAACTCCCGTCCATGGCACGCAGAGCGGCGGCTGCCCGAGCTGCTCGAGTCTCGCCCCGCGCCGCGCCGCACTTTTAGACGAGTGCGGAGGGGAAGTCAGCGCGGAGCTGCAGCCCCCGCCGGCCGCCGCCGCGCGGCGAGAGGGAGTTCCCAAAGCTGCCTCGGCCCGGGGCCCGGCCGGCCCCCTCCTTGCGTCCTCCCCCTCGCGGCGAGGCTGCCCCGCGCCCAGGCTGCCCCGCGCCCGCGCCCGCCGCCGCGGCCCGCAGCGATGATCTTCCCCAGCAGCAGCGGCAACCCCGGGGGCAGCAGCAACTGCCGGACGCCCTATCGCAAGCAGCAGTCTCTGGTc
>XM_024453033.1
GGTGGTTGAGGCCGCGGTAGGTGGGGACGCGGCGGCGCTGCTCCTCCGCTGCCGCCGGGAGAGTCGGCGACGCCGCCAGCTCCGCGCGCGAACTCCCGTCCATGGCACGCAGGGCGGCGGCTGCCCGAGCTGCTCGAGTCTCGCCCGCTGCCGCGCCGTACTTTTaggcgagtgcggaggtcgaaggcggaggggaagtcagcgcggagCTGCAGCCCCCGCCGGCCGCCGCCGCGCGGCGAGAGGGAGTTCCCAGAGCTGCCGCGGCCCCGGGCCCGGCCGGCCACCTCCTTGCGCCCTCCCCCTCGCGGCGAGGCTGCcccgcgcccgcgcccgcgcccgcacccgccgccgccgcccgcAGCGATGATCTTCCCCAGCAGCAGTGGCAACCCCGGGGGCAGCAGCAACTGCCGGACGCCCTATCGCAAGCAGCAGTCTCTGGTcccagcccaccccatggcccctcccagtcccagcaccaccagcagtaataacaacagtagcagcagtagcaACTCAGGATGGGATCAGCTCAGCAAAACGAACCTCTATATCCGAGGACTGCCTCCCCACACCACCGACCAGGACCTGGTGAAGCTCTGTCAACCATATGGGAAAATAGTCTCCACAAAGGCAATTTTGGATAAGACAACGAACAAATGCAAAGGTTATGGTTTTGTCGACTTTGACAGCCCTGCAGCAGCTCAAAAAGCTGTGTCTGCCCTGAAGGCCAGTGGGGTTCAAGCTCAAATGGCAAAGCAACAGGAACAAGATCCTACCAACCTCTACATTTCTAATTTGCCACTCTCCATGGATGAGCAAGAACTAGAAAATATGCTCAAACCATTTGGACAAGTTATTTCTACAAGGATACTACGTGATTCCAGTGGTACAAGTCGTGGTGTTGGCTTTGCTAGGATGGAATCAACAGAAAAATGTGAAGCTGTTATTGGTCATTTTAATGGAAAATTTATTAAGACACCACCAGGAGTTTCTGCCCCCACAGAACCTTTATTGTGTAAGTTTGCTGATGGAGGACAGAAAAAGAGACAGAACCCAAACAAATACATCCCTAATGGAAGACCATGGCATAGAGAAGGAGAGGTGAGACTTGCTGGAATGACACTTACTTACGACCCAACTACAGCTGCTATACAGAACGGATTTTATCCTTCACCATACAGTATTGCTACAAACCGAATGATCACTCAAACTTCTATTACACCCTATATTGCATCTCCTGTATCTGCCTACCAGGTGCAAAGTCCTTCGTGGATGCAACCTCAACCATATATTCTACAGCACCCTGGTGCCGTGTTAACTCCCTCAATGGAGCACACCATGTCACTACAGCCCGCATCAATGATCAGCCCTCTGGCCCAGCAGATGAGTCATCTGTCACTAGGCAGCACCGGAACATACATGCCTGCAACGTCAGCTATGCAAGGAGCCTACTTGCCACAGTATGCACATATGCAGACGACAGCGGTTCCTGTTGAGGAGGCAAGTGGTCAACAGCAGGTGGCTGTCGAGACGTCTAATGACCATTCTCCATATACCTTTCAACCTAATAAGTAACTGTGAGATGTACAGAAAGGTGTTCTTACATGAAGAAGGGTGTGAAGGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTTAAATTCATCTAGTAGCTGTTCCCCCGAACAGGTTTATTTTAGTaaaaaaaaaaaaacaaaaaacaaaaacaaaagatttttatcaaatgttatgatgcaaaaaaagaaaaagaaaaaaaaaaagaaaagaaaaCTTCAATTTTCTGGGTATGCACAAAGACCATGAAGACTTATCCAAGTGCATGACCGGATTTTTGTGGTTTTGTTCATTTTGTGTTTAATTTGTGTTTTTTTTTTCCAGCTGTATGAAATGGGCTTTCTGAAGTTTAAATAGTCCGACTTCACCCATGGTGTTCTGTGCTTGCAGTGCGAGTGTTGCTGTAATTCAGTGTTGCCGTCAGTGTCTCTtttcttagctttctgtctttctttcAACGTAGTGTGAAGTGTCTTATCCTTTTCTATGAATTCCAATTTGCCTTAACTCTTTTGATGCTGTAGCTGTTTCAGTAAAAGTTAGTTCAAACTAATGATGTAGAATGCTTTGACCAAATGAGCTGGTCTATTATGCCTTGTAAAACAGCAGCATAGGGCTTTTAAAAGGTAGTCAATAAAAGTTGCTGAAATTTTGGCTTTTTTAAATATGTAGTAGGTGTTTTTAATGATTTTTCACATAATGTGTAAGGTAGTGAAATGCAAGAAGGGAAAAATGTTTTGTGTGAAACACATTTTCTGACTGGGGAACTTTTATTAGGGTAAATTGTTTGTAAGGCTGTACGCCAACAGTTTCCTCTGATAGTTTGACTGATTTAGGATATCTGCTGTATGATGCAATGTAAAGTCTTTTTTGCCTTTTTTCAGGAAAAAAAAAAAGCTAACTTGATGTACTAGATTTAGTGTAggtagtgttggggttggggatgggggtgggggaggggAGTCACTGAATGTTTTGTCCTTCCTTTATACTAATGATAGTGCTTTAGAATGAGAATTATGCCTGAAATCTGGCAAACCGAAAAATGTTGCTATTGCAACAAAGTGGCAAAAGCTAAAAGTAAGGATTTATCTTCAAACATAAGCTGAGATAACGAATAGAAGCAAAACGATTGGCTACTAGctctctctctctctctctATTAGGTAAATTTGAAAAATAAAAATGACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGAAGAGCCAGTAACCAGTAGCTCCAACTTGTCTCAGCATCACATCTTCTGTGCTCTTTATTTTTGCCGGACCAGTTTGCGGTTAGGAGAATGTGCCTTTTTTGTACCTTTGCATTTAGGTTTTATAATTTTAATTGATGTATGGACACACACAAACAAAAAAGCATGAAGGAAGATTTGGATCCAAGCAGTGCCACACTTTACATCATCACTACAAGTGTTCAAGTGTAAAGAAAACCAATTTTGAAACTATGAAATTCCTGATTCATAAATACACAGTTATTTCTACTTTAGTACATATAAGATAATTCACTGTTATTAAAGCTCTTTTATTAAGGCAATTGCATATGTTTTAAAAGCAATGGTAAATTAAGTTGTCTTCCAAAACTGTGTACTTGTCTGGTCAGCTGTGTATGATCAGTTATCTACCTCAGAGTCTATTTTCTTTTGTGCTGGGACAGGTTGCTGGCCCTCCCTGTTTCCACAGACCAAATCCTCCTAGCTCAGGAGCTAGGGCTAAGCAGTTATTTCTTTCAAGTATTTTTTAGTTCTTAAATTTTATGCTTGTATTTGATGATAGATGTCAGTGACATTTCATAGTTTCAAAAGTCCTTGCTGCTCTGAGAAGTGTAGATTCTAGTGAAAATTACATAGTCATAAGAGAAATGtgtttttgtttttgtttttgtttcatttttttAAAGTTGTGGTATTATTGGTTCTATGCTCCCTGGAATATTACTGCTTTGTGAAAGTCCAGACTGAACGCAGCACCCTCTGTGTACCTAGTACAGTTATAAACCTGGGTCTCTCACTACTTGATATTTTTGCATTAGTTAAGACAGAAATTTGATAGCTCGGTTAGAGGGGAGGGGAAATCTGCTGCTAGAAATGTCTGAACTAAGTGCCATACTCGTCTGGGTAAGATTTGGGAAACATAACCTCTGTACATAAAAAAAAAAAAATCAGTTAAACATCACATAGTAGACAGCCATTAAATTATAAAAAAATTAATTTATGAAGAAAGACCTTTTGTACAGATTGAAAAAAAAAGATTTTCATAGAGATATCTATATGATCAAGAGAGTTAATTTTTTATTTTTGTTTTACTAGTGCCACAGACTTGCCAGTGGTAACTTATTTGTCCGGTTCAAGATAACTCTGTAGTTTTCTTTCCTAGGACTTGTTGTTAAACGCCAAAAGACATTTTTGAACTGTACATTTGATCAGATTGTTAGCTTTTCTGTTTTATTTCTTTTGAGAACCTTTGAATAAAAAACATCTGAAATTTTA

Publications

PMID - Link Title