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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ZNF655P1
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Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr12:7040486-7041682  UCSC
Coordinates (T2T) chr12:7053956-7055152  UCSC
Coordinates (hg19) chr12:7147790-7148986  UCSC
Strand -
Parental Sequence NM_001085367.1
Parental seq. overlap 1073 bp
Parental seq. overlap (%) 75.9%
Genomic Region Intergenic
Retrocopy Summary ZNF655P1, located on chr12:7040486-7041682, is a retrocopy of the parental gene ZNF655. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ZNF655
Full Name zinc finger protein 655
Also known as VIK|VIK-1
Coordinate chr7:99558544-99576453
Strand +
Gene summary This gene encodes a zinc finger protein. The zinc finger proteins are involved in DNA binding and protein-protein interactions. Multiple alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ZNF655P1
Bonobo Pan paniscus ZNF655P1
Orangutan Pongo abelii ZNF655P1
Gibbon Nomascus leucogenys ZNF655P1
Gorilla Gorilla gorilla Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Adipose SubcutaneousMuscle SkeletalArtery TibialArtery CoronaryHeart Atrial AppendageAdipose VisceralUterusVaginaBreast Mammary TissueSkin Not Sun ExposedMinor Salivary GlandBrain CortexAdrenal GlandThyroidLungSpleenPancreasEsophagus MuscularisEsophagus MucosaEsophagus Gastroesophageal JunctionStomachColon SigmoidSmall Intestine Terminal IleumColon TransverseProstateTestisNerve TibialSkin Sun ExposedHeart Left VentricleBrain CerebellumWhole BloodArtery AortaPituitaryBrain Frontal CortexBrain CaudateBrain Nucleus AccumbensBrain PutamenBrain HypothalamusBrain Spinal CordBrain HippocampusBrain Anterior Cingulate CortexOvaryBrain Cerebellar HemisphereLiverBrain Substantia NigraKidney CortexBrain AmygdalaCervix EctocervixFallopian TubeCervix EndocervixBladderKidney Medulla00.20.4
log10(TPM+1)

Related Sequence

>ZNF655P1
CCTGATGCAAGCTGCGACGGTCATTGTCCTCCAGAACAGGGATGGAGAAAATACCAGCCCAGGAAGCAGCAGGCTCACCAAGGGTCCGATTTCAGTTTTTGGAGACCCAGTCTGAGAGTCTGACTCCAAAGCCTCATTTTGTGCAGGACACCGACATGGAACAGGGACTCACTAGGGTTCCACCTGTTCCCCAGGTGCCTGCCTTTCCCCATGAGGACAGCCCAGGAGATCAGGCAGCTGCGCTCCTGACAGCCAGGTATCAGCAGTTTGTGACATCTGAGGATGTGGCTGTGCACCTTACTCAAGAGGAATGGAGATACCTGGACCTTGTTCAGAGGGAACTCTACAGAGATGTGAGGTTAGAGAATTATGGGAATGTGGTCCCACCAGGCATACTTCTCCCCCTTCCACCAGATTCATAGTGTGAATTTTTGCCCGGCCCTGAGTCATACCCAGGCAAGTGCTTTCTCTGGAGAAACTTAGTCCTTACAGCAGGAATCTCCAAGAGATGGCCCAAGTATTACCTGCTCAGAAACTCCTTTTCCATGATTGCCAGATATTAAACTTAACTGATGCGATAGATGCCCCCTAGGATGCCACCACTATGTAAAATCGCAGCTCCTCGAATTACCTTTGTTAAATTTCTAGTATCAGAGTCCAAGGAAGCCCCCTGCTGCAACCAGATGCACTTTGAACTCAGTTTATTCAGAAACCATGGTTGGTGGTCATCTTCTACTTGTGTTCTGAGAAACCACAAAATTCAACTTCAGCTCTTCAGTTATGATATTGTCATATTATTTTAGAATGTGAAACATATGCCGTGTGCCCCTCCTTTTATGTAGTGAATACAACCTGCCCCTTATGGTGGTTAACTCCCTGTCACCCCTGGGCTTTCCTCACGTTTAACACTCTGGTTTTCTCCTTCCTGAAGTCCCTGTGGCCCTCTTCAGGGTCCTACCCTCCTCCCCTTTATTCTTTGCAGTTCTGTACAGATTGATGCACTTATATTGCCTTTTCTGATTAAATGTTCCTTAGTCTTTCCTTGATGGAGGGGAGAAGGGAGGACAAAGAAGTTAAATTTTATTTTGGGGCATCAAAACAAATGTCTACTTAGTAACTTTGTAAACTGTAAAGTGATATATATAATTGTGAAGTACTATTAATTTTACCTAATAATTACAGAGTGTTCAACAGTTT
>NM_001085367.1
TGGCAGCTTGTTTTGCCTTCACGGGAGTAGAAGGAGGCGGCGTCCGGCCGCGGCCGACGGTAGTTCGCTTCCCCGAGAGTGCGCGGAGGCCCGGGTGCGAGGAGGGCCTGTTTCTCTTCAGCCCTGGTTCATTCACCTCGCGGACCGAGGGCCCCGCCGTCAGGAGCCGGCGACCGTGCCCTGGTGCGAGCTGTGATGGTCATTGTCCTCCAGAGCAGTGATGGAGGAAATACCAGCCCAGGAAGCAGCAGGGTCACCAAGGGTCCAGTTTCAGTCTTTGGAGACCCAGTCTGAGTGTCTGTCCCCAGAGCCTCAGTTTGTGCAGGACACCGACATGGAACAGGGACTCACTGGGGCTCCACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCCCAGGAGACCAGGCAGCTGCGCTCTTGACAGCCAGGTACCAGGAGTTTGTGACATTCGAGGATGTGGCTGTGCACCTTACTCGAGAGGAATGGGGATACCTGGACCCTGTTCAGAGGGACCTCTACAGAGAAGTGATGTTAGAGAATTATGGGAACGTGGTCTCACTGGGCATACTTCTCCGCCTTCCCACCACCCGGATTCATAGTGTGAATTCCTGCCCGGCCCTGAGTCATACCCAGGCAAGTGCTTTCTCTGGAGAAACACTTGCCGTCCTTACAGCAGGAATCTCCAAGAGATGGCCCAAGTATCGGCTTCCCATCGATATTGCTCGTCCCTGCTCGGAAACTCCTTTTCCACGATTGTGAGATATTAAAATTGACTGATGGAATAGAAGCTCCCCAGGATGCCACCACTGTGTAAAATCGCAGCTCCTCAAATTACCTCTGTTTAATTTCAAATGTTAGGGTCCAAGGAAGCCCTCTGTTGCAACCAGATATGTTTTGAACCCAGTTCATTCAGAAACCATGGTTGGTGGTCATCATCTACTTGTATTGTGAAAAACCAGAAATTCCAAATTCAGCTCTTCAGTTATGGTCTTTTCATATTATTTTAGAATGTGAAACTTATGCTGTGTGCCCCTCCTTTTATGTGGCGAACACAACCTGCCCCGTATGGTGCCTAACTCTCCTGTGAACCCTGGGCTTCCCTCATGTTTAACATTCTGGTTTCCTCCTTCCTTGAAGTCCCTGTGGCCCTCTTCAAGGTCCTACCTTCCTACCCTTTATTCTTTGTGGTTCTGTACAGATTGATGCAATTATATTGCCTTTCCTGATTAAGTGTTCCTTACTCTGTCCTTGATGGAGGGGAGAAGGGAGGGCAAAGAAGTTAAATTTATTTCAGGGCATCAAATTGAATATCTACTTAATAACTTTGTAAACTGTAAAGTGACATACATATAATTGTAAAGTACTGTTAATTTTATCTAATAATTACAGAGTTTCCAACAGTTAA

Publications

PMID - Link Title
No publications available for this retrocopy