Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FAHD2P1
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr12:70671797-70673032  UCSC
Coordinates (T2T) chr12:70651202-70652437  UCSC
Coordinates (hg19) chr12:71065577-71066812  UCSC
Strand +
Parental Sequence NM_016044.3
Parental seq. overlap 1123 bp
Parental seq. overlap (%) 23.5%
Genomic Region Intragenic (PTPRR)
Retrocopy Summary FAHD2P1, located on chr12:70671797-70673032, is a retrocopy of the parental gene FAHD2A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FAHD2A
Full Name fumarylacetoacetate hydrolase domain containing 2A
Also known as CGI-105
Coordinate chr2:95402672-95416702
Strand +
Gene summary Predicted to enable hydro-lyase activity. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes FAHD2AP1
Bonobo Pan paniscus LOC117979262P1
Gorilla Gorilla gorilla LOC101146690P1
Orangutan Pongo abelii LOC112132106P1
Gibbon Nomascus leucogenys FAHD2AP1
Green monkey Chlorocebus sabaeus FAHD2AP1
Crab-eating macaque Macaca fascicularis LOC102117493P1
Rhesus Macaca mulatta LOC704637P1
Baboon Papio anubis FAHD2AP1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104661449P1
Marmoset Callithrix jacchus LOC100409256P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FAHD2P1
ATGCAGTTCCCCGGCTAGCTGCAGTCATTGGTGCCAGTGCTCAGGCACCTGCTGTCCTTGACCTCTGGCCCCACAAGCACTAACCCAGCGCAGGAGGACCAGCCACCGCCGCCAGGCTCTGATGCTGGTCTCTGGTAGAAGAAGGTTGCTCACAGCTCTGCTGCAGGCTCAGAAGTGGCCCTTTCAACCCTCCAGAGACATGAGACTAGTCCAGTTCCAGGCACCCCACCTGGTGGGGCCTCACTTGGGCCCAGAGATGGAGAATGGTGGAAGGGTTATCAACCTCAATGCCTTTGACTCTATGCTCCCCAAAATGATGACACAGTTCCTAGAGCAGGGAGAGGCCATCCTCTCAGTGGCAAGAAGAGCCTTGGGTGCCCAGTTGCCAGTCCTACCATGGTTGGAAGTGACCTCCCTGGCTCCAGCCACATGGCCAGATAAGGTGGTGTGTGTGGGCATGAATTATGTGGACCACTGCAAAGAACAGAATGTGCCCGTGCCCACGGAACCGATCAACTTCAGCAAGTTTGCCAACTCCATTGTGGAGCCCTATGATGAGATGGTCCTCCCATCAGAGAGCCAGGAGGTAGACTGGGAAGTGGAGCAGCTGTGGTCATTGGAAAGAAAGGCAAGCACATCAAGGCCACAGATGCCATGGCCCATGTGGCTGGCTTCACTGCGGCTCATAACGTGAGTGCTCATGACTGGCAAATGAGACATGATGGGAAACAGTGGCTGCTGGGAAAAACCTTCAACACCTTCTACCCTCTGGGCCTTGCCTTGGTGACCAAGGACAGTGTAGCAGATGCACACATCTTAAAGACCTGCTGCCAAGTGAATGGGGAAGTGGTCCAGAGCAACAACACCAACCAGATGGTGGTCAAGACAGAGGAGCGGATAGCGTGGGTCTCCCAGTTTGTCACCTTTTACCCAGGGGATGTCATCCTGACTGGGACCTCCCCAGGTGTTGGTGTATTCAGGAAACCTTCTGTCTTTCTCAAGAAGGGAGATGAAGTCCAGTGTGAAATTGAAGAACTAGGTGTCATCATCAGCAAGGTGGTGTGATGGCTCCTGCACAGGCCCTGGTCATAGGATGGGGGCATCTGCTCCCACTCAGCTTAGCCCAGGGAAATGTCGAATGCCAGGTGTGGGCAGGTGCCAGCCCTGTAAGCCTCCTCTTCTAGGTAGAAGGGAGAAGGATAGAGCTCTCTTCAATAAATACGTCGGGCCAAAGC
>NM_016044.3
GCTTTTCTCTCGGGTGATCCGGCCGAGTGGCCCTGGGTTAGCAGCTGCTGCATTTCCCCGGCTGGCTGCGGTCACTGGTGGCAGTGCTCAGGCGCCCGCCGCCCTTGACCTTCGGCCCCGCGAGCTCTAACCCTACAGCGCAGGAAGATCGGCCGCCGCGGCCAGGCTCTGATGCTGGTGTCTGGTAGAAGAAGGTTACTCACAGTTCTGCTGCAGGCTCAGAAGTGGCCCTTTCAACCCTCCAGAGACATGAGACTAGTGCAGTTCCGGGCACCCCACCTGGTGGGGCCTCACTTGGGCCTGGAGACAGGGAATGGTGGAGGGGTTATCAACCTCAATGCCTTTGACCCCACACTCCCGAAGACGATGACGCAGTTCCTAGAGCAGGGAGAGGCCACCCTCTCAGTGGCAAGAAGAGCCCTGGCTGCCCAGTTGCCAGTCCTACCACGGTCGGAGGTAACCTTCCTGGCTCCAGTCACACGACCAGATAAGGTGGTGTGTGTGGGCATGAATTATGTGGACCACTGCAAAGAACAGAACGTGCCCGTGCCCAAGGAGCCCATCATCTTCAGCAAGTTTGCCAGCTCCATCGTGGGGCCCTATGATGAGGTGGTCCTCCCACCACAGAGCCAGGAGGTAGATTGGGAAGTGGAGCTGGCCGTGGTCATTGGAAAGAAAGGCAAGCACATCAAGGCCACAGATGCTATGGCCCACGTGGCCGGCTTCACTGTGGCTCATGACGTGAGTGCTCGTGACTGGCAAATGAGACGTAATGGGAAACAATGGCTGCTGGGAAAAACCTTCGACACCTTCTGCCCTCTGGGCCCTGCCTTGGTGACCAAGGACAGTGTAGCAGATCCACACAACTTAAAGATCTGCTGCCGAGTGAATGGGGAAGTGGTCCAGAGCGGCAACACCAACCAGATGGTATTCAAGACAGAGGACCTGATAGCCTGGGTCTCCCAGTTTGTTACCTTTTACCCAGGGGATGTCATCCTAACTGGGACCCCCCCAGGTGTCGGTGTATTCAGGAAACCTCCTGTCTTTCTCAAGAAGGGGGATGAAGTCCAGTGTGAGATTGAAGAACTAGGTGTCATCATCAACAAGGTGGTGTGATGGCTCCTGCACAGGCCCTGCACATAGGATGAGGGCATCTGCTCCCACTCAGCCTAGCCCAGGGAAAGGCCCAGTGACAGGTGTGGACAGGTGCCAGCCCTGCAAGCCGCCTCTTCTCGGTAGAAGGGAGAAGGACAGAGCTCTCTTCAATAAATTCGTCAGGTCAAAGCAGCAGCTTTGCTTCTGCTGTTTGTCTTCTTTTGGGCTTTGTTTCATGGGACAAGTTGGGGCATTTTGTGGGACTGGGGAAGAAGAGAGCAAATACACACACATATGCCAAAAAGATGCTGCTGGGCTGGGGAAAAGACAATTCGTGTCGTCCCCTTGTTTATCACATCAAAGAAGGGAAAAAGCAAGAGATGGCAAGGGACAATCAAGCCTCAATGATTATATTTATAGCTAAGGGTTTGCAGCCTCCTCTCCATCTTCTGGCTCTAGGACACAGCTGTGTTCTGGGGCTCAGAAGTCTCAGCACAGGCTCCTTCTCACAGTTCTAGCTACAAGTGAACTGCCGGATGAACTGTTCTAGTTTTTCCTGATTGTCCAGGCTGGCAAAAGTAGGGGACAGGTGGAGCCTGGGGCCTGCAGGGCTCGGCGTCTGCTGCAGAACCTGGGCCATGGAAGATGGGCCGTGAGTGCACTCACCACAGGGACTGTGTCCACATGGCCCAGGGGCCAGGCCTGTCCCCCAGAAACCTGCCTTGAGACCTCTGACCCCTTAGGCCTCAGTGTTTGAGTGCAAATGCTGCCTCAAAGCAGCCCCAATACCCCACCTAGAAGGATGAGCCAGTGATTTGGGAGACCAAGAGGCAGGAAACCATCCCACCTTCTCCAACCCATCACCACGTCTATTGCTGGAAGACACCAAGTAAATCCCAGGGTCTTAATGAGGCACCATCAGGCCAGCCCTGTGGGGTGATGGGAACATAGCTGGGTTTCCCTGAGCCACTCTATTGGGGTGGGAGCAGGGGGACAGAAGATGGTGACACTGGCTCCTCTCACCCCTAGGTCTCTGAAGGTCCAGATAGCACTGATGGCAAGCTTTGGGTCTGCACACTCTGGAAAGAAGAGAGAAGTGAAGGCTCTAGGTAGGGAGGACAGGGAGACACTGGGCACAGGCTTCTCTCCTCTTGTTTAAAGAAGCCCAGGGAGGGATAGATCTCCGACTGGACAGAAGACTACTCTGCAGCCCGCCTTCCTAGAGTTGGGTTGTCACTGTCCGGCAGGGGGCAGCAGCCACCAGCAAACACCACTGCCTGCAGGAGCCTGGGCTGACTGGTTGGGACTCACCAAAGATCCCTTCTTCCTGGGCGGTGGCCTGCAGGAACTGGAACAGCTGTTGGAGAGGAGAAGAAAAAGAAGACATCAAAAAGAAAATCTAGTGCTGGGTGGATATAGAGTATGAAGATGTGGAGCTGGGAAAACAGAGGATGTGGTGGGATGGGGAAGGAAAGGTTGTGGAAGGCCTGCACCCCGTCTCAGTTCCTCCACTGCTTCGTCCCAGATTCTGTTTTTGTTTTCCTGAATCAGACTTAGTCTCCCTCCATTCTCCCGTCCCCTGTGTGCCCCCATCCTGGTCCTGCCTCACTGGACAGCCTCTCCGCGGCCTTCCTCCTCCCTGCTCCAGAATTCTACTTGGTGCCCCCCAACCCCACTCGACTCATTGTCCACCTGGCCTCTGAGGCCAGGCACCCTCATTCCCCTCTCCCACCCACCCCACCCAAGGAAGCCCAGCACAGACCATCTCATCTCACTCCACCATCACTTCTTTGCCAAATGCATTTCCAAACACCCTCATGAGCTTTGCTGATCTCTTTGCCATCTCTCCCTGCCCCACTCCGATGGCTCCTCCTGCCTGGTGAAGACTGCCCTGGGTATCCCAGAACTGAACCTGCAGCAGCCAGCACAGCTGACCTTGGGGCGATAAGCAGCCAGGGAAAGGCTTTCTtaaaaaaaaacaaaaaacaaaaccaataactcagtaagcagattaaacaaAGGTAGAGACGGAGCCCTCCACCCCTCTCACACACTCATCCTCACACCCAGCTATACCACACCCCACAAATGTTGCTTATGTTTCCTTGGTCATTCTGTCCATCCTCCTGTCTGTCCAAAGCCAAGGACACTGCTCTACTCTAAATTTTTTGTCCCGAAGCCCCCAAATACTGCAACCCTGACCCAATGCACGAAGCCACCCCAAAATACAGCAGAGGACACCAGGACTTTCATTTTCCCTCAGTATGGCCCATCCTTTGGGTATGCCAACTCCATGTCCACCAAGCACTGCATGTAGGACAGGGCACAGTTTGGAGGCCTTGGTCCAGCCACTGCCCCAGACCCACCTTGGCTCTCTCCTCACTAACACCCGAGAAGCCCAGACTTCCCAGTGTTTAGCAACAGATTAAACTCTAAGCCAACAACAACAGAACAGGGTGGAGTGAGTGGAAAGCAAATGAAATGTTAAAAAAAAAAAAAAAGCAATACTTGCATTCTCATTAGTAGGAACATGTGAGATGAAGCATGTTATGTTATTAGGCATTCTCTTGATTCGGTAAACACAAGCTGAATAAATTTATAAATATCAGCATTAAGCGAGATTTAACGGGGAGCTGTTTATCTTCTGCCTGTCAGGCAGGCGGCAACACTCTCCATGTATCACTCGCCAGCCGTGCAGTCCTCACTCTCTTGCCCAGGTAAGCTGGGGAAGAGCCTGCTGCCGCCCAGCTCTGGTTGTGGAAGGGCTGGCACCAAGGAGCTGCGAGcttacctcaactcatctcacctcaccATGCCGGCTGCGAGGCGGCCCGTGCAGTCCGTGCGCAGGAGGTCACACTCCCATGCTGCATCCCAGCCCCTCCAGAAGCAGAGCATGACctgggtgactttgaggatgctatttaacctctctaagctaaagctcctcgactgcagcatcaacagatcagtgccgacctgttaaggccgtcgagagcatcaaatgctactgttcagcaggtgcctgacacatagtaggtccacaagcaaatgatTTTCCTGCTTGCATCATTTCTAGCACAGAGCTGGAGGAAATGGCGAGGTGCAGGTGGCCGCTGGGCCCTGCTGTTCTACATGGGAGCAAGACAGCTGCTAGGTGAAGGGgaatgaccaggcagccacagggaggacatgtggcctcaggaagcctgggtgtgtatcctggttctgctaggaacacgtgtggggctttgtgtgggtgactctctggctccccaagcctccctttcctACTGTTATATCCTTAAAGTGCCTCTGAGGCCAAAGCCTTTGTGGCAATTGTCAAATGAGTCCATATGCAGTGAGTACCGTGTTGAGGGAGGACAAGGTCACCAAGAGCTGAGAATGTTTCTCCGACTGATGAGACCTAGATATTGGGTACATGGAGGTCCCCGGTCCCTTTGTGATTCCTGCAGCCTGTTGCCTCCTTGCCTGGACCCCGCCTCAGCTCAGAAAGCCAATTCCCTAGATTCCAAAGGCCTTCCCAGACCAATTAGCATGTCCTGCAGCTGTCAGCTCCCTGTGCCTAGCCTGGACCTCAGCTCATGTCTAGCACCCAGTCTCCCAACCCCACACATATTCACAAATAAAAGAAAATAACAAATGACATGAATTCTTCA

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