Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SUGP1P2
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr12:74170438-74171842  UCSC
Coordinates (T2T) chr12:74147758-74149162  UCSC
Coordinates (hg19) chr12:74564218-74565622  UCSC
Strand +
Parental Sequence NM_172231.4
Parental seq. overlap 1210 bp
Parental seq. overlap (%) 47.1%
Genomic Region Intergenic
Retrocopy Summary SUGP1P2, located on chr12:74170438-74171842, is a retrocopy of the parental gene SUGP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SUGP1
Full Name SURP and G-patch domain containing 1
Also known as F23858|RBP|SF4
Coordinate chr19:19276033-19320509
Strand -
Gene summary SF4 is a member of the SURP family of splicing factors.[supplied by OMIM, Sep 2003]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SUGP1P2
Bonobo Pan paniscus SUGP1P2
Gorilla Gorilla gorilla SUGP1P2
Orangutan Pongo abelii SUGP1P2
Gibbon Nomascus leucogenys SUGP1P2
Green monkey Chlorocebus sabaeus SUGP1P1
Crab-eating macaque Macaca fascicularis SUGP1P2
Rhesus Macaca mulatta SUGP1P2
Baboon Papio anubis SUGP1P2
Golden snub-nosed monkey Rhinopithecus roxellana SUGP1P2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SUGP1P2
CAAAGTTTCACCCTCAGAGGGAACCGAGACTCGGAAAGTAATAGAGAAATTGGCCCACTTTGTGGCAGAAGAAGGCCCCGCGATAGAAAAAAGTAGCTATAGAGGACTACAAGGAAAACCCGGCATTTGCATTTTTGCAGGATAAGAATAGCAGAGAATTTCTCTACTACAGAAAGAAGGTGGCTGAGATAAGAAAGGAAGCACAGAAGTCGCAGGCAGCCTCTCAAAAAGTTTCACTCCCAGAGGATGAAGAGGTCAAGAACCTTGCAGGGAAGTTGGCCAGGTTCGTAGTAGACTGGCATCCGGAGGTGGAAACCATCGCCCTCCAGAACAACTGTGAGAACCAGGCATTCAGCTTTCTGTACGAGACTAACAGCCAAGGATACAAGTACTACCGATAGAAGCGGGAGGAGTTCCGGAAAGCCAAGGCCGGCTCCACAGGCAGCCTCAGGGCACCCGACCCCGGCCTGAAGCCCAAGTCCCCTCCTGAGGCCCTGTTAGGGTCTTGCCTCCGGCCACCACTTGTCCCATCTAGCCGCTCCAGGGAAGCCAGCCTCGGCAGCCACCGTGAAGAGGAAGCGGAAGAGCCGGTGGAGGCCAGAAGAGAATAAGGCAGAACTCCCACCTGCTGAGCTGGTGCAGAGGGACGTGGACGCCTCTCCCTCGCCTCTGTCAGTTCAGGACCGCAAGGGGTTCGGCTATAAGAAGGGGAAGCCCGTGGGTCTAGTGGGCGTCACGGAGCTGTCGGACGCCgATATACGACATGATCATGCAGCACAAGCGGGCCATGCAGGACATGCAGCACCAGCACGGCTACCACAGCGACGAGGAGGTGGACAGCGAGCTGGGCACCTGGAAGCACCAGCTGCGGCGCATGGAGATGGACAAGACCAGGAAATGGGCCAAGCAGCTGACAAAGGTGGGCTAGGGCAAGCATTTCATGGGAGACTTCCTGCCTCCCGACGAGCTGGAGAAGTTCTGGAAATCCTCAAGGCCCTGAAGGAGAGCCGTGAGCCTGACTACTCGGAGTACAAGGAGTTCAGGCTGACTGTGGAGAACACTGGCTATCAGATGCTGATGAAGATGGGCTGGAAGGAAGGCGAGGGGCTGGGCTCGGAGGGCCAGGGCATCAAGAACCCAGTCAACAAGGCCACCACCACAGTGGAAGGTGCCGGCTTCAGCATTGACCGGCTGGCCGAGTTCTCCAAGGAGGACGACGAGTACGAGGCCTTCCGCAAGAAGATGATGCTGGCCTACCGCTTCCGGCCCAACCCCCTGAACAATCCCAGACGGCCTTACTACTGAGCGTTCTGGAAA
>NM_172231.4
ATTGTGGGATTGGATGAGTCTCAAGATGGACAACCGGGATGTTGCAGGAAAGGCTAACCGGTGGTTTGGGGTTGCTCCCCCTAAATCTGGAAAAATGAACATGAACATCCTTCACCAGGAAGAGCTCATCGCTCAGAAGAAACGGGAAATTGAAGCCAAAATGGAACAGAAAGCCAAGCAGAATCAGGTGGCCAGCCCTCAGCCCCCACATCCTGGCGAAATCACAAATGCACACAACTCTTCCTGCATTTCCAACAAGTTTGCCAACGATGGTAGCTTCTTGCAGCAGTTTCTGAAGTTGCAGAAGGCACAGACCAGCACAGACGCCCCGACCAGTGCGCCCAGCGCCCCTCCCAGCACACCCACCCCCAGCGCTGGGAAGAGGTCCCTGCTCATCAGCAGGCGGACAGGCCTGGGGCTGGCCAGCCTGCCGGGCCCTGTGAAGAGCTACTCCCACGCCAAGCAGCTGCCCGTGGCGCACCGCCCGAGTGTCTTCCAGTCCCCTGACGAGGACGAGGAGGAGGACTATGAGCAGTGGCTGGAGATCAAAGTTTCACCCCCAGAGGGAGCCGAGACTCGGAAAGTGATAGAGAAATTGGCCCGCTTTGTGGCAGAAGGAGGCCCCGAGTTAGAAAAAGTAGCTATGGAGGACTACAAGGATAACCCAGCATTTGCATTTTTGCACGATAAGAATAGCAGGGAATTCCTCTACTACAGGAAGAAGGTGGCTGAGATAAGAAAGGAAGCACAGAAGTCGCAGGCAGCCTCTCAGAAAGTTTCACCCCCAGAGGACGAAGAGGTCAAGAACCTTGCAGAAAAGTTGGCCAGGTTCATAGCGGACGGGGGTCCCGAGGTGGAAACCATTGCCCTCCAGAACAACCGTGAGAACCAGGCATTCAGCTTTCTGTATGAGCCCAATAGCCAAGGGTACAAGTACTACCGACAGAAGCTGGAGGAGTTCCGGAAAGCCAAGGCCAGCTCCACAGGCAGCTTCACAGCACCTGATCCCGGCCTGAAGCGCAAGTCCCCTCCTGAGGCCCTGTCAGGGTCCTTACCCCCAGCCACCACCTGCCCCGCCTCGTCCACGCCTGCGCCCACTATCATCCCTGCTCCAGCTGCCCCCGGGAAGCCAGCCTCCGCAGCCACCGTGAAGAGGAAGCGGAAGAGCCGGTGGGGGCCTGAAGAGGATAAGGTAGAGCTCCCACCTGCTGAACTGGTGCAGAGGGACGTGGATGCCTCTCCCTCGCCTCTGTCAGTTCAGGACCTCAAGGGGCTCGGCTATGAGAAGGGGAAGCCTGTGGGTCTAGTGGGCGTCACAGAGCTTTCAGACGCCCAGAAGAAGCAGCTGAAGGAGCAGCAGGAGATGCAGCAGATGTACGACATGATCATGCAGCACAAGCGGGCCATGCAGGACATGCAGCTGCTGTGGGAGAAGGCAGTCCAACAGCACCAGCACGGCTATGACAGTGATGAGGAGGTGGACAGCGAGCTGGGCACCTGGGAGCACCAGCTGCGGCGCATGGAGATGGATAAGACCAGGGAATGGGCCGAGCAGCTGACAAAGATGGGCCGGGGCAAGCACTTCATCGGAGACTTCCTGCCTCCAGACGAGCTGGAAAAGTTTATGGAGACCTTCAAGGCCCTGAAGGAGGGCCGTGAGCCTGACTACTCAGAGTACAAGGAGTTCAAGCTGACTGTGGAGAACATCGGCTACCAGATGCTGATGAAGATGGGCTGGAAGGAGGGCGAGGGGCTGGGCTCAGAGGGCCAGGGCATCAAGAACCCAGTGAACAAGGGCACCACCACAGTGGACGGCGCTGGCTTCGGCATTGACCGGCCGGCGGAGCTCTCCAAGGAGGACGACGAGTATGAGGCGTTCCGCAAGAGGATGATGCTGGCCTACCGCTTCCGGCCCAACCCCCTGAACAATCCCAGACGGCCTTACTACTGAGTGTTCTGGAAATACATACTTTCTGAATGACCAACCGTCCCTGGACTGTGGAATGTTCCGGCCTGCATTTCTGCCCACCCCTTCCGTTGTCACGAGTGCCGTGCCGTGTAATAAAGTCCCAGTGCTCATCCACCACAGATGCCTGGTCCTGTTGCAGGAAGCCCCTCCTGTTAGCAGCGGGATGCAAGATGCTGTCTCGGGGCTCTCCTTATTGGCCTGTGGAGTCTCCATCCCCGCTCAGCCTGGGTTGCACTGGAGGGGAGGAAGAAAGTTGTTTTCAGCATAGTAAAGCTGGAAggccaggtgcagtgtctcacccctgtcatcccagcactttgagaggccaaggcgggcggatcactggaggtcaggagtttaagaccagcctggccaacatggtgaaatcctgtctctactaaaaatataaaattagctgggcatggtggtgcacacctgtcgtctcagctactcgggaggcagaggcaggagaatggcttgaacctgggaagcggttgcagtgagccaagattgcgcctttgcactccagcctgggcaagagagcaagactctgtctcaaataataataataataataaaGCTGGAGACTTGGCCACA

Publications

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