Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name CCNG2P1
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Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr12:75257612-75257759  UCSC
Coordinates (T2T) chr12:75232245-75232392  UCSC
Coordinates (hg19) chr12:75651392-75651539  UCSC
Strand -
Parental Sequence NM_004354.3
Parental seq. overlap 128 bp
Parental seq. overlap (%) 2.3%
Genomic Region Intergenic
Retrocopy Summary CCNG2P1, located on chr12:75257612-75257759, is a retrocopy of the parental gene CCNG2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CCNG2
Full Name cyclin G2
Also known as -
Coordinate chr4:77157207-77170060
Strand +
Gene summary The eukaryotic cell cycle is governed by cyclin-dependent protein kinases (CDKs) whose activities are regulated by cyclins and CDK inhibitors. The 8 species of cyclins reported in mammals, cyclins A through H, share a conserved amino acid sequence of about 90 residues called the cyclin box. The amino acid sequence of cyclin G is well conserved among mammals. The nucleotide sequence of cyclin G1 and cyclin G2 are 53% identical. Unlike cyclin G1, cyclin G2 contains a C-terminal PEST protein destabilization motif, suggesting that cyclin G2 expression is tightly regulated through the cell cycle. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes CCNG2P1
Bonobo Pan paniscus CCNG2P1
Gorilla Gorilla gorilla CCNG2P1
Orangutan Pongo abelii CCNG2P1
Gibbon Nomascus leucogenys CCNG2P1
Green monkey Chlorocebus sabaeus CCNG2P1
Baboon Papio anubis CCNG2P1
Marmoset Callithrix jacchus CCNG2P1
Mouse lemur Microcebus murinus CCNG2P1
Dolphin Tursiops truncatus CCNG2P1
Velvety free-tailed bat Molossus molossus CCNG2P1
Sloth Choloepus didactylus CCNG2P1
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Adipose SubcutaneousMuscle SkeletalArtery TibialArtery CoronaryHeart Atrial AppendageAdipose VisceralUterusVaginaBreast Mammary TissueSkin Not Sun ExposedMinor Salivary GlandBrain CortexAdrenal GlandThyroidLungSpleenPancreasEsophagus MuscularisEsophagus MucosaEsophagus Gastroesophageal JunctionStomachColon SigmoidSmall Intestine Terminal IleumColon TransverseProstateTestisNerve TibialSkin Sun ExposedHeart Left VentricleBrain CerebellumWhole BloodArtery AortaPituitaryBrain Frontal CortexBrain CaudateBrain Nucleus AccumbensBrain PutamenBrain HypothalamusBrain Spinal CordBrain HippocampusBrain Anterior Cingulate CortexOvaryBrain Cerebellar HemisphereLiverBrain Substantia NigraKidney CortexBrain AmygdalaCervix EctocervixFallopian TubeCervix EndocervixBladderKidney Medulla00.20.40.6
log10(TPM+1)

Related Sequence

>CCNG2P1
TGATGAAAGTGAAAGTGAGGACTCTGAAGATGTGAGTTGTGGGGAATGAAGTCTCAGCAGCTTTCATCGCAGAGATCAAAGACGTACATCTTTTTGAACTTGAAAGTGACACAGTCTCTGTGCTTTCCATTTTAGAAATCTAATTGTA
>NM_004354.3
ACTCTTAACAAAAACAAGGGGCTCGGGGAGGTTTCCGCTGAGGCGGCGGGGGTGCGGCGGTGGGCTGGTCTTCCGCGGCCGGCGTTGCGCCGCGGCGGAGGGTGGGCGCGCGGGGAGCGGGATGGAGCCGGGGCTGTGAGGCCGAGGCGGCGGTGCCTGGGAGGAAGGGTCGGATGCCGGACCGGGGGCACCGCTGAGGCGGTGGGTCCCCGACCTGCGAGACAGGTTTGGAAGCCCCCGCTGCGCCCAGTCCGTGCGGACCGCGAGGCCGCGGGCGGGTGGAGGCGCGTCTCCGGCACGATGAAGGATTTGGGGGCAGAGCACTTGGCAGGTCATGAAGGGGTCCAACTTCTCGGGTTGTTGAACGTCTACCTGGAACAAGAAGAGAGATTCCAACCTCGAGAAAAAGGGCTGAGTTTGATTGAGGCTACCCCGGAGAATGATAACACTTTGTGTCCAGGATTGAGAAATGCCAAAGTTGAAGATTTAAGGAGTTTAGCCAACTTTTTTGGATCTTGCACTGAAACTTTTGTCCTGGCTGTCAATATTTTGGACAGGTTCTTGGCTCTTATGAAGGTGAAACCTAAACATTTGTCTTGCATTGGAGTCTGTTCTTTTTTGCTGGCTGCTAGAATAGTTGAAGAAGACTGCAATATTCCATCCACTCATGATGTGATCCGGATTAGTCAGTGTAAATGTACTGCTTCTGACATAAAACGGATGGAAAAAATAATTTCAGAAAAATTGCACTATGAATTGGAAGCTACTACTGCCTTAAACTTTTTGCACTTATACCATACTATTATACTTTGTCATACTTCAGAAAGGAAAGAAATACTGAGCCTTGATAAACTAGAAGCTCAGCTGAAAGCTTGCAACTGCCGACTCATCTTTTCAAAAGCAAAACCATCTGTATTAGCCTTGTGCCTTCTCAATTTGGAAGTGGAAACTTTGAAATCTGTTGAATTACTGGAAATTCTCTTGCTAGTTAAAAAACATTCCAAGATTAATGACACTGAGTTCTTCTACTGGAGAGAGTTGGTTTCTAAATGCCTAGCCGAGTATTCTTCTCCTGAATGTTGCAAACCAGATCTTAAGAAGTTGGTTTGGATCGTTTCAAGGCGCACAGCCCAGAACCTCCACAACAGCTACTATAGTGTTCCTGAGCTGCCAACGATACCTGAGGGGGGTTGTTTTGATGAAAGTGAAAGTGAGGACTCTTGTGAAGATATGAGTTGTGGAGAGGAGAGTCTCAGCAGCTCTCCTCCCAGTGATCAAGAGTGCACCTTCTTTTTCAACTTCAAAGTGGCACAAACACTGTGCTTTCCATCTTAGAAATCTGATTGTTCTGTCAGAATTTATATTTACAGGTTTCAAAGCAATAAATGGGGGAATAGGTAGTTTCCTGGTTTAGCCCCCATCTAGTCAGGAATTAATATACTGGAATACCTACCTTCTATTTGTTATTCAGATCAGATCTGGCCTATTTTCATATTTATCCTAAGCCATCAAATGGGGTAGTGCCTCTTAAACCATTAACAGTACTTTAGACATTGGCACTTTATTTTTCTCGTAGATCTTTAGCTACTTTGGGGAGGAGGGAAGGTGCTGATACCTTCAATTTGTTACTTTTCAAGATTTTTAAAAATAACTAGTGTAGCTTATCTTAAACATTTTATAAAACCTTCAGATGTCTTTAAGCAGATTGGAAGTATGCAAGTGCTTCCTTAGCAGGGACAGTGGATAATCCTTAATGGTTTATCATAGATTTCACCCTCCCCCCTTCTCAGAAGAGTGAGTATGCTCTTAAATGTCAAACACATTTTTGTTGTTTTGTTTTTTAAATGATCAGTGTCTATTTGATGTGATGCAGATCTTATAAATTTGGGAATTATAATATTGACATTTCTGTGATTTTTATATATGTAATGTCTTAATTGAGATTTCTGTTAAGGCAGAAATAATTAGGCTAGGGCTCTTAGTTTTCATTCCTATTGCCCAAGTATTGTCAAACTATGGTATTATTTTAATGTTACTTTAAAAATCCATAATCTGCTAGTTTTGCATGTACTTATATGAAAACAGTGCAGTAAGTTGAAAACTCAGTATCTATGGAATTGATAAATGTTGATCTGGTGTAGTATATTTTATCGCATTTTCTTATATTAAAAAATGTCTGCATGATTACATTTTATTTCCTTTGTAATTTACATTTCAGAATAGTGTATTGCTATATGGGTGCCAAGATTGAATATGAAGAACCCGAGTGTTTGTAGTATTATAGTTTTAAGCAAATCTGTGTGGTGATACAGCCATAAGAATGGGGCTTATATAAACTCTGTACATGTAAGATTTTGTACAGAGAATTTTTAACTTTATAAATTGTATATGAACATGTAAATCTTTTAAAATGTACATAAAATACTGTATTTTTTTACCTTGTGTGTGATAGTCTAGTCATTGCATGTAAATATAATTTATTATGTATTCTGTAGTATAAATCATACATTGATGACTTACATTTTTACTGGTAAGTCAACATCCGTTGGATGTTTTCTGAAGTGGCTCTTTTTGAAGTGATAATAGATTGTAATTCAAAATAAAATTATTAATGAATTCTCCTTGTTTGGGATCACATCTTAATTTTTAATCTGTTAAAAGTTCTTGATGTATTTTAATGAGAAGACTTTAGGTGAGGCTACAGTGATTCCAGAGTGAGCCTTCTAACTGGCTAGCAGAAGTTCTCTAGGTTTGGCATCTGTGCCTTGGAGATACTGAAAGAGAATCTGTCATTTGACAATTGACCtctttgtgggatggactcattaagtatgctctcagagactggtatattaccagaatgcctattaattttcagtgagaggcaacaggtattaagtagaacagaatgctcaggttggcagattagaacgatctttcaggagacaaagcaagttttaatcagttgtttggttaataagtatggGGTGTTCGCTGTGATAGGGCCCCGCCAGCTTCTGGCTCTTGTGGACCTCAAAAGTATCAGGTGGTTTTGCAAGTGGTGGTCCTTTCCCCTGCCCCACCCCAATAGGTTCCCCATCTGTCTAGTTTGATTTTTGTAGACCTTTGTTTTCTCTAGTTAGAAAATCAGGTACACTGAATATGGTTTTCATGTAACACCTCTTCTCTGGAGATAGGGGTATGTTTTCCTACCCTTCTAGTGGAGAATCCTACTTGAGGATGACCTTTCCTCTCTTACTAAATAATATTAGTAAATAGTGGGCAATATATTCTGCTTTCAGATTTTGATTTGTTGAGATGTAAAAGTTGTTTGGGGCTTACCAAATCTCAAGACTCTCTTTAGCTCCTGCAGGATTGTATTGCTTTTCTTACTGGATATTTTTCCTGGGTAAGCATCTTTGTGGCTTCATCTCTTCCCCCTGTGGTTTTCAGTGTATTTAGTCGAGACCTCTCTGCTGAGCTTGCAACCTGTTTATTCACATGGCCTGCCATGCCACTTGGAGGTTTCTGATTACTCCCAAACCTGCTGGTTCTTTATGTCTTTCTCAGCGAATAATTCCATCTATTCATGTTGGAAACTTAGGTGATATGCTCATCTCCTTTTGCCTGTTTATGGAGGTCACCAGCCTCTATCATTTGTATGATTTCGTTTACACTGTTTATATCTCTCTGTCCCCCCTTTTTCTGCCATTGGCATGGTTTAGACCTGTACTCTTTATCAGCAGAGGTACTGTAATATATTTGTGATCCCTCAGCTTCCAGGCTTACTCCTGGTCTCTGCCTTCCTATCTACATATCCTTTTAAAATAAAATTTTAACTATCTCCTGAAAAATTGTTGAGTAGGTCACGCACAATCAGGAGAAAAATCTATTCATGACATACAAGTCTCTGTCTAATCTGAACACTGCACCTGTCTCTGGCCTTTTTTTCTTGTCATTTCCTAGACCTTAAAAAATGTGTATTGAGAAAGAACTCTGTTAGCTATACAGAAGATGAACTGGGCAATATAGAGTAGCAGCATGGAGACCAGTCTGACTGAACTAAGGCAGTGGAAGTGTGGATGAGGAAGAGAGGTGAAAATTGAGAAGCGCTATCCTTTCTCTTTGGGCATTATTAGGAGGCTCACAGACAAGTCCAGGAGCCTGGTTATACCCTCCTGTGCCATTCAACCAGGTGGCTTTCCCATGACTGTGATGAATAAAATTGAGAAGCCCCTGCCCTTTTCAGAGCAGAGGGTGAGGAGAAAGCTACCATTTTGTCCTCATCCTTACCCCCGTTGACTTGGCGAGAGATTTGACCTTTCAGGTTTTGATCCTGTCATTTTCTAGGATGTGGTGCACGCACTTTGCTGTTGCGCATGGTGAAGTATTGTGCCTAGGTCCTGGGTCTTCATCTGTTTGGCTCTGCTACTGTTTCCTCCTCCCAGGAAGTGTGGTTAGACAAATAATGTGTTTTAATTACCTGTCACACTCAGGATTAATACATACTCAGGTTAACTGTAGAGAGGCATTGGCTTCAGAACACTCCTCGTGACAATTTTAACCATTTTCTTTGTCTAGAGTCTGCCTTTTTCTTTTTTACAATTTCTTTTATTTCAACACTAGGTTTCAATATGGTGTTcctgctacctcccacctccctcctccctcatcacacATGCAAATTGTCAGCTTATTGAGACAACCCACTTAGATTCATATATGGACAAGGACAAGGTATTTTGCATTTGTTACTGGAATTCAGTTTTCCTAACTATTTACTACCAGAAATGGTCAATAACTTACTTTGTGTTTAGCAAATCAAATTGTGTGATAGATAGTTTCCCAGTATGATGGCCAGTCAGTCTTTCCATCCCTGTGCCTACAtgctgctcttcccgtccacaagtggagtctgtttctcttgagttttggctggccttatgaatggctttgcttactgaagtgcagcagaagaaatttagtatatgtccaagcctaggctttaagagactggcagctttccttttatcctttttggaagctagccaccatgctgcaaagaagctcagctggattactgaaagatgagaggccatgtggagagagactcttgaggatgagagattatcttggatgttccagccttaagctcccagctgaatgtgggtgtatcctcagctacaccacagaaaacagaggaactactcagtcgatcccaatcaacccacagactcactagaaataacaaattattgttttaagccacgaggttttgggggagggttgttaaacagtaatagataagtgagacaGATTGCTTGTTATTTATGGTCAAATGGTGATTATCTCTGGTGAGATTACAGGTGATGTTTTTTTTAAGTTATGCCTATCTGTAGTTTCCTTTTTTTCCTAAAATTGATTTGAATTATTagtgtattaacagaataaagaatgaactttaaaacaca

Publications

PMID - Link Title
No publications available for this retrocopy