Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GOSR2P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:32421978-32422290  UCSC
Coordinates (T2T) chr1:32279894-32280206  UCSC
Coordinates (hg19) chr1:32887579-32887891  UCSC
Strand +
Parental Sequence NM_001012511.3
Parental seq. overlap 279 bp
Parental seq. overlap (%) 12.9%
Genomic Region Intergenic
Retrocopy Summary GOSR2P1, located on chr1:32421978-32422290, is a retrocopy of the parental gene GOSR2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GOSR2
Full Name golgi SNAP receptor complex member 2
Also known as Bos1|EPM6|GS27
Coordinate chr17:46923108-46975519
Strand +
Gene summary This gene encodes a trafficking membrane protein which transports proteins among the medial- and trans-Golgi compartments. Due to its chromosomal location and trafficking function, this gene may be involved in familial essential hypertension. [provided by RefSeq, Mar 2016]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes GOSR2P1
Bonobo Pan paniscus GOSR2P1
Gorilla Gorilla gorilla GOSR2P1
Orangutan Pongo abelii GOSR2P1
Crab-eating macaque Macaca fascicularis GOSR2P1
Rhesus Macaca mulatta GOSR2P1
Baboon Papio anubis GOSR2P1
Golden snub-nosed monkey Rhinopithecus roxellana GOSR2P1
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GOSR2P1
TATGGAGCCCCCGTACCAGTAAACCCACAAGCAGGTCCATGAGATCCAGTCTCACATGGGATGCCTGGAGATGGCAGACAAGCAGTTTTCACACTTAGTAGAAAATGAAATCCAAGCAAGCACAGACCAGATATTCAGGGGTCTAGAACATCTGGAGATTTTGTCTAGCAAGGAGCCCCCTAACAAAAGGCAGAATGCCAAACTTCAGGTTGACCGGTTAAAGTATGATGTTCAGCACCTGCAGACTGCTCTCAGAAACTTCCAGCATTGACACTATACAAGGGAGCAGCAGGAGAGACAGCAAGAAGAGCTT
>NM_001012511.3
AGAGCCGGAGCCGTGGCCTGCGGGGCCGGCGACATGGATCCCCTGTTCCAGCAAACGCACAAGCAGGTCCACGAGATCCAGTCTTGCATGGGACGCCTGGAGACGGCAGACAAGCAGTCTGTGCACATAGTAGAAAACGAAATCCAAGCAAGCATAGACCAGATATTCAGCCGTCTAGAACGTCTGGAGATTTTGTCCAGCAAGGAGCCCCCTAACAAAAGGCAAAATGCCAGACTTCGGGTTGACCAGTTAAAGTATGATGTCCAGCACCTGCAGACTGCGCTCAGAAACTTCCAGCATCGGCGCCATGCAAGGGAGCAGCAGGAGAGACAGCGAGAAGAGCTTCTGTCTCGAACCTTCACCACTAACGACTCTGACACCACCATACCAATGGACGAATCACTGCAGTTTAACTCCTCCCTCCAGAAAGTTCACAACGGCATGGATGACCTCATTTTAGATGGGCACAATATTTTAGATGGACTGAGGACCCAGAGACTGACCTTGAAGGTGGGGTCCCTGCTGGGGGACAGAGAGAAGGCCTCTTGTTTTAGCCTCATCCAACAGTTTAGTAACTGTGTTTATATTTTGATTACGTGTCCTCAAATTGTGATATTTTGATGACAAGACAGAGCCCTTGAGTTTGGGATCCTTTCTGTTGGAGTTGAGTTATTGTGAGCCTGAAAGTACCCAGTTCCTTTGCCAGTGCTTGAAACAAACCATGAAGTGGCCTCTCTTAGGATCCAGGTCTTTTCCCATTTACTGAACTTATCATGAAAGTGAGTGCTACTACGAGGGGTCCAATCACAGGCTGAGAAATTGTGTTACAGAATCTACTCTTGGAAGAATGAAGACGTGGCTGTCCTTTGGTACCTCGCTTTAAGGTGGCTTTCCCTTAGGACCCCTACTGTGGACTGCCTTATAACTAAAACCTTTTGTATTTTAGTAACTGAATCCCCACTGTGCAGTGTTAGGGCTGCCTGGTTGTTTGCAGTAGATTAGAGCTTTAGAAGCTTCTAGAGCTTCTAAAGCCCGTGCTGGTGATCCCAGCGACTCTTCACTCCCTAGCCTTAGGTATTCCTAGAAGCCCTGACCAGTTGGCACTGCTGAGACTCCAGCCCCTGGGAGTGGTTTACAGAAACATTACACAGACTCTGATGTCAGTCATGATGTTTCAGCCTCTGCCCTTTTCCTGTATCAACCCTGATGGATAATAGGGCGTGGGTTCTGTCTGTTATCAGGGTGTGGTCCCCTGTGAATGAAGCACTCCCAGCCACTGAGCTGTGAGAAACAGTCACTCGGAAGTGTGAGCTTTATCTTAGTTTTTGTTGGATCATGTTGAGTCTGTCAGCTCCACAGGACTTCAGTACGTTTCTGAACAGTCCCTGCCATCTCTACGGGGGAGAGGGTCAGGCAAGCTGCAAGTGACACTCACCTCCTGCTGACAGTTGCAGTGTCTCAGATGGCCTGGAAGGGTGGTCTCCAGCAGCCTGCTGGGCGCTCCCCTTTCATGAGAGCCACCTGCAGTGACCTGAACTGATACATGTTGATTAGTCTGCCCTTTCTTTAGAAAACTGCTACTCTCCTTTTCATATCTCAGAAAAACAGTAGAGGCCTTTTAGGACCAAACTCCATGTCACACTGATGAAGAGCCAGTGGGGGTTAGAGCGTCCTGTTAAGGCACATGCTAACTTCCCACTCAAGTCTGGCAGCGCTGGGGCATCAGCACACCTCTTGCCACCCACACTGATACCAGAGGGGAAGGCTGTGAGGTGGCTGGGGGTTGAGACTTGAGGTTTCTAACTTTCCTCTGCACACCTGTGGCTACCTGGTGTTTGTCTCTTGATTCCCTCCACCTGCCTCACACCCTGCCTCCGTCGGGATTTTCCACCTACACCATTCAAAAGGAACATAGGAGAGGGCATGAAGGGGCTAGGCTGAAGCACTCTGATGACTGGGGCCAATTTGTGGCTGAAAATGAATACATTTTTTGAAATTTATGGTCATTTTCAAGTGATTTAGAAGGTTGATCCTTAGCCTCATACAGTGATGAAATAATCTGTGTGTTCAGAGCCAAGCAGGACTTTAGCAAGAGTCTGATTGTATTGTCACTATCTCGGGGAAAAAAAAATACAAATACATTTCTCTGATCTCTGATGGCAA

Publications

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