Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FAM120AOSP4
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr13:36257728-36258297  UCSC
Coordinates (T2T) chr13:35477223-35477792  UCSC
Coordinates (hg19) chr13:36831865-36832434  UCSC
Strand -
Parental Sequence NM_001322224.3
Parental seq. overlap 293 bp
Parental seq. overlap (%) 5.8%
Genomic Region Intragenic (CCDC169-SOHLH2)
Intragenic (CCDC169)
Retrocopy Summary FAM120AOSP4, located on chr13:36257728-36258297, is a retrocopy of the parental gene FAM120AOS. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FAM120AOS
Full Name family with sequence similarity 120A opposite strand
Also known as C9orf10OS
Coordinate chr9:93443332-93453581
Strand -
Gene summary Differences in the expression level of this gene are associated with the survival rate of those with glioma. [provided by RefSeq, May 2017]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes FAM120AOSP3
Bonobo Pan paniscus FAM120AOSP2
Orangutan Pongo abelii FAM120AOSP2
Gibbon Nomascus leucogenys FAM120AOSP1
Green monkey Chlorocebus sabaeus FAM120AOSP1
Rhesus Macaca mulatta FAM120AOSP2
Baboon Papio anubis FAM120AOSP2
Golden snub-nosed monkey Rhinopithecus roxellana FAM120AOSP3
Gorilla Gorilla gorilla Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FAM120AOSP4
AAACCTCTGTAGGGGAGCAGGACTCAGCAGACAGGCTGTGGCCCAGACAGCAGCTGCTGAGCTGATGGAGCCTGCACCCACCCAATTTGGCCAAAGAAGCCCCCATACTCTCCTTGAAAAAGATTTCCAGAAACTGTTGTGTCAATAACAGTCTCAAAAGCAAAACCACCAACACTGAAGATCATTCTAGAGTCTGATTTGAAAACTAGGGTCAAATTCTGCAGAGGCTTTCAAGTGGCAAAAAAATCACCCTAGTAGCCAGATCTGCGGTCTCATCCATCACACCAGGGAAAATGTTCCATTCGCCATTCCTCAGCTTCTGGTTCTGGTTTCTGAGTTCTGTCTATATTGGAGGGCTTt
>NM_001322224.3
GCCCAGGCCCGCCGGCTAGCAGGCGGAAGAGGCGGCGCCGGCGGGACGCGGCTCGGGGCTCCCGGAGGCGGCGGCGGAGGCGGAGGCCCGGAGTTGGGCCGGGACGGGATCCGGGAGGCTTCTGAGCCGGAGCAGGCAGCGCCTGGAGGCCAGAGGCCGTTCGCCCGCCTCAGGCCGGTCGGCCGCCGCTCCCCTCCCCTGCGCCCTGTTCCCGGCAGGGCCAGAGAGGCCGCCGCCTCCGCCCGGTGGTTCTCGGGCGAAGGGAAGCCGCGAAGCAGGTCCTGGGGAAGAGCTCGCCTGCTCCTGAGGGAAGCAGCGATAAGATGGCGCTTTGAAGGGGAGCCGAGGCCGAGTCACTCTGTTCGTCGGGACGCCGCCTTTCTAACGCCGCCGTCGGCTCGCACCACTCTGGGCCTGCTGCCCACACTGACTGCGGGGTCCGGGAGAGCGGGATGCTGGCCGGCCGCGCCTGGCTTCTTGGAAAGAGCAGGAAGGAGCGCGAGAATGCAGTTCCGCGGCAGAAACCTCTGTAGAGGAGCAGGATGCAACCGACAGGCTGTGGCCGGACAGCTGCTGCCCAGCACATGGAGCCTGCACGCGCACGGTTTGGCCAAAGAAGCCCCCATACTCCCGGTGAAAAAGATTTCCAGAAGCTGTTCTGTCAATAACAAAGTCTCAAAGAAAACCACAAAACCACCAACACTAAGATCATTCTTGAGTCCAATTTGAAAAACTAGGGTCAAGTTCTGCAGAGGCATTGAAAGGACAAGAAACCACCCTGATACCCATCGTGTGAGGGAAAATGCTCTATTCACCATTCCTCAGCTTCTGCTTCTGGTTTCAGAGTTCTCTCTATATTGGAGGGTGTTTTAAAGCTAGAGTGGTCTTTATCCACTTTTATTAACACATCTGAATGTGAAGGTCAAGAGAGGAAAGTGATATGTCCTAAGTCAGAGTAGAGTCAACAAGAAAATAAGacaaacagcgactgagcccctggtgtatactgggcattggccagctactggggatatggagatgaagaaaacataacccttcttcaaggagcccaacctaccaaggtagacagacatatagacaaatagatacTTGCATAGAAAAAAAGAGGAAAAGGGGATCAGTGTGACCTGTGTAACTAAGTACCCTATAAACCCTCCTGCAACAGATCATATTGCCCTTTATAGTGGGGATGGTAATCCCATCTGAATTCCACAGGTACTTTGCAGTCATACCACACCCATGTGTCTGTCGGTCCTGACTGTACCATTTATAAACAGCTTCACTTTCAGCAGTTCTCAGCCCTCTTAAGCTAGGGTCATTGTCAGTAGGGATACTGCTTCATAAGCACCAGCAGAACACCAAAGGAGACCATATGGGTGAAAGCAACCAGCACTGCCCTGGCGCTTCATAGGTTCTTAGAGTTTTTATCTTTTACTTTCAGTCTAACACAGCACTGCCTGCTTTTTGTTTTTGTTGCTTGGTTTGTTTTTTTcttaccgtgttcaccaaacttgtgtccaaatagctttgggctgatgcaaaaatatctatgtggaagagaagagttgttctcatggagggccttcagatgagtgctatagactctctaggcaactccaagaggcttctcaagcagggtgggcagtgagagctgctatggaatcaatggacaaactgacagggactgctttgaaagacagtactcagttgagtatatatattctCTCTTAAGGGCTAAAAGTTTATAATCATCCCTTAAACACTCTGTGATGGGATCTTCAGGATCATCTTTTGAAGTAAACTATATTTTACAATGTGATATAAATCAAGTGAGTTTTTTTTTTAATTAGGAATTCCCGTAAGTATAAAGCCATTTTAAGATGTACATTTTAGAGACTAGCTATTGTTAAGTGGTCTGTTACATTTGTGTAAACCATAAAGATCTTTCCAGAGGAAGCAAGTCTCTCATACCAGAATATGAAAACACTAGCCCCAGGCTTGAGTAACCTAGATCACATGAAGCTGACTTCCTCTGAGGAGTCTAGGACCTCAGATATAGGTGGGAGCACACAATCACCCTTCTGGAAACAGCTAAGACTTGTGGCTCAGGCGTTTGACCTTGCTGACAAAGGAAGAGGTCAGGGTTGACGAGAGCTCCAGGAAGAATGAAAGTGCCTCTGGAAGGCAGGAAGAAAGTTACTGTAATACTTTATCCTTAGGGTGGAACAAGAGTCTGGGAAAGCTCTGCCCTATAAAGTCCCCTTCCCCATTCCTCCCAGGTCCCAGGTGTGGTGGTATAAGGAGAGTTGGCCCAATCTGGGAGCTGAGGGATCTGAGACATCCATCTACTGCATCAGTGCACTCAGAAGTGAGGATTTTGGCACAGTTATTCATGAGACATCAGCCCATCATATAAAACATGCCTCCAGTTTGGTTAAACTAGGAAGCACTATATAATATTTTAAAATCAGTTACATGTCACTGATAAAAGACTTAGTATTACCATGATGTTATTTTTCTTGAggcaacatgatgaaacccattgtctacaaaaaatccaaaaattagccaggtgaggtgtgcacctgtagtcccatcttctcaggaggctgaggtgggaagactacttgagccaaggtggtggaggttggagtgagcccagattacaccacttgcactccagcctgggcaacagagtgaggccttgtctcaaaaaaaaaaaaaaaaaaaaaaaaCAACGATTTTTATGAAAGTTGGAGAACCAGGATTAAGACTGGGTGGGAACTAAGAATGACAGGTACTTTTAACAATACAGCTGGGATGCTGTTGATGACATGAATGAACCCCACTCTTACTGTAGTCATTTGCTCAAGATTCAAAGTCATGAAAAAGAGTAGAATGGACCAAACTTAGGTACTAAGAGTCCCCAGCCTGGCAGTGAAAACAGTATAGTTCCTTTGACTTTAATATGGGGAAACAGGTTCCTGGATTGACGATCTCACCAAAACTATACACAATTTTTTTTTATTTTTTCTCAGACCTTTCAGGGATGAATATATACAATTTCTGAGAAAGAAACCTGAGTACCTTTAGGAAGGGAAAAGGAATGCTGAATATCCCCAAATAACATGTCTTACATGTTTGGTAAGACTTACTGTACCCTGTCCTAGAAGATAGAAGATGCCCTGCCCTTAGAAGACAAAGAGACTGTAGAGCTATGCCTTCTAAATCTTAAGCCACTCTTCAGATAATGGATCCCTTCATGGTCAGCCCAAACATCTCAAGAACTTTTAATTTGTACCGTTTGTCTTTTTTTCCATTTATTTAATAccacaaattcactttattattatgaagccaatatctacatcttctcacaaagattctcttaagaaatgcagaactggccgggtgcagtggctcattcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcgggagttcaagaccagcctgacaaacatggagaaaccctgtctctactaaaaatacaaaatcagctaggcgtggtggcacatgcctgtaatcccagctactagggaggctgaggcagaagaatcccttgaacctgggaggcggaggttgcggtgagccgagatcgcaccattgcactccagcctgggcaacaagagcgaaactccgtctcaggaaaaaaaaaaaaaagcagaactccttactggcctcaaaacatactgtgacatttccgtaacctacaggtctagaaatcctgtGCCAAATATGGTTAACTTGTTtgctgagaaggatgtggaagaactggaaccctcatacacagctgatgggaaaacagtctggAACTTTCTTAAAACATTCTGGTAAATGGGGGCCCGGCAAGCTAGAAAGTGTGGCTATAATCCCTTGCTTTTTTCCTTTTTTAAACTTTTTCTCTCTCAGTCCTGACCTAAAGATGACCCTAGTCAggctggacacggtggctcacgcctgtcatcccagcactttgggaggccaagacgggtggatcacctgaagtcaggagttcaagaccagcctgaccaacatggagaaaccctgtctctactaaaaacacaaaattagctgggcgtggtggtgcatgcctataattccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagccgagatcgcgccattgcactccagcctggacagcaagagcaaaactccgtctcaaaaaacaaaaacaaaaacaaacaaaaaaaTTCccctgagagaaaacctgtctttccagccagaggagcaggaaaaaatgaccctatggtctgaagaatgtggaaataatccatctttttttctctctctgctttctgcctgaggggcgttccttttggcaaaatgagcaggcagtgtaggcaggtaatcatcagagagaaagcccatctttctaagccagaggatgaggaaaaggggccccctgggtgccagggagtctggggggaaatcctgaagagcaaagacctgaaaagaggattctctaattctgtacatgagctgaattccgtgctcagcccagagctgcacatacaagagacagagcccaggcaacacagccacactctgaactgacactcggaccaccaccaccaaacagaaggcaacgcaggacctgcagactaaggctaacgaggctgattgcctgacaaaacagaaaaaaaagaaacattcttcagggaattttagcagaacacagagtctcccaacataaAAcagacagtcctcactgcacagcagttcagaactgtaaaaatgaccttccaacctgaaactgccatgtgctgttcataatcattaatgggtaaaattgtgatttttttcctgtcttttgaaaattgtcaaaacattgataatcttgtactgttagaaatgtataaggaaacaataaagtaaatatttttgta

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