Retrocopy Name | HNRNPA1L2 |
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Species | Homo sapiens | |
Coordinates (hg38) | chr13:52642433-52643782 UCSC | |
Coordinates (T2T) | chr13:51857901-51859250 UCSC | |
Coordinates (hg19) | chr13:53216568-53217917 UCSC | |
Strand | + | |
Parental Sequence | NM_031157.4 | |
Parental seq. overlap | 1298 bp | |
Parental seq. overlap (%) | 34.7% | |
Genomic Region |
Intergenic |
|
Retrocopy Summary | HNRNPA1L2, located on chr13:52642433-52643782, is a retrocopy of the parental gene HNRNPA1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | HNRNPA1 |
Full Name | heterogeneous nuclear ribonucleoprotein A1 |
Also known as | ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 |
Coordinate | chr12:54280726-54287087 |
Strand | + |
Gene summary | This gene encodes a member of a family of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs), which are RNA-binding proteins that associate with pre-mRNAs in the nucleus and influence pre-mRNA processing, as well as other aspects of mRNA metabolism and transport. The protein encoded by this gene is one of the most abundant core proteins of hnRNP complexes and plays a key role in the regulation of alternative splicing. Mutations in this gene have been observed in individuals with amyotrophic lateral sclerosis 20. Multiple alternatively spliced transcript variants have been found. There are numerous pseudogenes of this gene distributed throughout the genome. [provided by RefSeq, Feb 2016] |
Species | Scientific Name | Retrocopy | |
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Gorilla | Gorilla gorilla | HNRNPA1P57 |
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Chimpanzee | Pan troglodytes | Without Homology |
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Bonobo | Pan paniscus | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>HNRNPA1L2 |
TTTTCTGCCCGTGGACGCCGCTGAAGAAGCATCGTTAAAGTCTCTCTTCACCTTGCCGTCATGTCTAAGTCAGCGTCTCCAAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACTGATGAGAGCCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACAGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAGGAGGTGGATGCAGCTATGAATACAACGCCACACAAGGTGGATGGAAGAGTTGTGGAACCAAAGAGAGCTGTCTCCAGAGAAGATTCTCAAAGACCAGGTGCCCACTTAACTGTGAAAAAGATATTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTAATTGAAATCATGACTGACCGAGGCAGTGGCAAGAAAAGGGGCTTTGCCTTTGTAACCTTTGACGACCATGACTCCGTGGATAAGATTGTCATTCAGAAATACCATACTGTGAAGGGCCACAACTGTGAAGTTAGAAAAGCCCTGCCAAAGCAAGAGATGGCTAGTGCTTCATCCAGCCAAAGAGGTCGAAGGGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGATGGTTTCGGTGGGAATGACAACTTTGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGCTGTGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGATGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCAAATTTTGGACCCATGAAGGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGCGGTGGAGGCCAATACTTTGCAAAACCACAAAACCAAGGTGGCTATGGCGTTTCCgATTTTAATTAGGAAACAAAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGTGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGTTTTAGACAAATACTCATGTGTATGGGCAAAAAACTCGAGGACTGTATTTGTGACTAATTGTATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAGTGTTTTAATGTAGATTTTTTTTTTTGCACCCATGCTGTTGATTGCTAAATGTAATAGTCTGATTGTGACGCTGAATAAATGTCT |
>NM_031157.4 |
AGATACGTTCGTCAGCTTGCTCCTTTCTGCCCGTGGACGCCGCCGAAGAAGCATCGTTAAAGTCTCTCTTCACCCTGCCGTCATGTCTAAGTCAGAGTCTCCTAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACTGATGAGAGCCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAGGAGGTGGATGCAGCTATGAATGCAAGGCCACACAAGGTGGATGGAAGAGTTGTGGAACCAAAGAGAGCTGTCTCCAGAGAAGATTCTCAAAGACCAGGTGCCCACTTAACTGTGAAAAAGATATTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTGATTGAAATCATGACTGACCGAGGCAGTGGCAAGAAAAGGGGCTTTGCCTTTGTAACCTTTGACGACCATGACTCCGTGGATAAGATTGTCATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAAGTTAGAAAAGCCCTGTCAAAGCAAGAGATGGCTAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAACTTtggtggtggtcgtggaggtggtttcggtggGAATGACAACTTCGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGATGGTGGTTATGGAGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGGGTTATGGAAACCAGGGCAGTGGCTATGGCGGGAGTGGCAGCTATGACAGCTATAACAACGGAGGCGGAGGCGGCTTTGGCGGTGGTAGTGGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGGAATTACAACAATCAGTCTTCAAATTTTGGACCCATGAAGGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGCGGTGGAGGCCAATACTTTGCAAAACCACGAAACCAAGGTGGCTATGGCGGTTCCagcagcagcagtagctatggcagtggcagaagATTTTAATTAGGAAACAAAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGTGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGTTTTAGACAAATACTCATGTGTATGGGCAAAAAACTCGAGGACTGTATTTGTGACTAATTGTATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAGGGTTTTAATGTAGATTTTTTTTTTTGCACCCCATGCTGTTGATTGCTAAATGTAACAGTCTGATCGTGACGCTGAATAAATGTCTTTTTTTTAATGTGCTGTGTAAAGTTAGTCTACTCTTAAGCCATCTTGGTAAATTTCCCCAACAGTGTGAAGTTAGAATTCCTTCAGGGTGATGCCAGGTTCTATTTGGAATTTATATACAACCTGCTTGGGTGGAGAAGCCATTGTCTTCGGAAACCTTGGTGTAGTTGAACTGATAGTTACTGTTGTGACCTGAAGTTCACCATTAAAAGGGATTACCCAAGCAAAATCATGGAATGGTTATAAAAGTGATTGTTGGCACATCCTATGCAATATATCTAAATTGAATAATGGTACCAGATAAAATTATAGATGGGAATGAAGCTTGTGTATCCATTATCATGTGTAATCAATAAACGATTTAATTCTCTTGAATGAAATGACAACTGTATGGATTTGGGACTGGCAGAGATTTGGACTTTCCCTACCCACTCCCCCTGATAATAATGTTGAATGCTTCTATCACAATTCAAGTTCAAAGCTCTGCCAGGGAATAGAAACTAGCTGCTGGCTAATGCCGCTCCATAAATCCGCAGATTTGAAGTGTCTGGGAGGCCTTTTAAAAATAACTAATATCAGAAAGCATTTTAATGAACGTAAAGATAGGCTTACATTAAAGGAAAACTGCAGTTTGACTGGGTTCTGGTTGGGTGGGCCTTCAGAGGTTCTATCAGTTAACTATACTAATTAATTTGGAGATTCAAACCATACCAATAGAAACTAAATTTTTCTACATAATTTCATGTTAACTGCAGTTTCCCTTTATGGCACAAGGGGTCACACAACCTACCTAAAATGTTAATTGTATAGAAAATGATTTCTAAACCTTTAACAGTTAATATCCAATAATGTGTTATTTGTACATAGATTCTTTTGAGCCTTACCTTTGGTGCTCTCTCAATTTCAGTGCTATTGTACCTAGTAGCATAGAGATTTGTCTATCAATAGGACTGTATATTCCATCCCATGGGTGTGTTGGAAGTTTGGGGAggaggagggtggtgggaggtgggtgggaggtggtggtgggtgggaAAGCATGGGTGATAGTTCCATGATACTGGCTGAGTTTGCAATAGCAGGTGGAACCCTAACTATTGAGGGAGTTTGCAGATACCTCAGGATTCGTGACAATGCCTTTAAAGATCCAGGAGAGATGTTCAGCTACTAGGAACTGCTAGCAAGTATAGCGCGAATGGCTCCGAGCTCAGACACTCTACAGCTGAGAGTAGACACTTGTGGTATGTGGAGTACAGATAAGCCAGGGGCAGGCCACGGCACGCTCCATGAAAGCTAGGAGGGAGTGAAATATCAGTGATCATCGCAAGGAAGGAGGCAGACAAGAGTAAGGCACACCTGACTCTTAGGACTAGCAGTCAGAACCAGGAGGAAAGGTTTTATTGCTATGCGGGTAGGTAAGAACAGATTTTACTTACATCCATATAGTTACTTAAAGTCCAGTTTTCTGTTAAACATTTTTCTTAATATATTGAGCCAAAACTAGTCCAGTTAAGCTGAACTTGGTTTTTCTGGAGATGAATTGTTTTAAATTGACACCCTATTGATGGCTCCCAGTTGAAGGAAGTGAGCACATTATTTGTACTGTGAATATAAATTTTTGCCCTTTTATTTATCTTCCTTTGACCCATTTCCTTAAAATAATGGCTCAAAGTAATAGACTTCCCCAAATGGTGGGGGGATGGGTGGGTTATTAATGGGAGGTATGGGGGGTTTAGCTTGAGATGGGACTTGGTCTTAGAGCTAGTTCTAAAGGTTGTTTACTTTTCTAGGGAGGAGTCTGCTACTAGTCTTATCAGCTCTTAAAAACAGAAACTCATCTGTCCAAGTTCGTGGCAGAAAGGTAAGTTTTTACAAATTAGTGCTCAGCAAAAGAATGCCCTGCGTTCCCAAAGTAAAAGAATGACAAGCTGTACCTTAAACCAAAACACTTCGTAATCTCATCCAATTGCAAAAAGAGTTATTAGCCAACCAGGTATTCCCAGTAGTGACAGTGGATATAACTGTGTAGTCATTCACCTCTGCTTATATGAATACTTTACAACCTCTTTTGCCTTTTGCAGGAACGTCCTTGTGAAGACCTTTATCTGAGCCACTGTACTTCGTTATCACTGCCATGCAGTTTACATGAGCTGTTCTGCAGCTCAAATTCCATTTTGTGAATGGGTTTTTTTTTTTAATAAACTGTATTTAACTTA |
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