Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ZDHHC20P4
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Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr13:68984917-68987299  UCSC
Coordinates (T2T) chr13:68206945-68209327  UCSC
Coordinates (hg19) chr13:69559049-69561431  UCSC
Strand +
Parental Sequence XM_006719797.1
Parental seq. overlap 2185 bp
Parental seq. overlap (%) 41.2%
Genomic Region Intergenic
Retrocopy Summary ZDHHC20P4, located on chr13:68984917-68987299, is a retrocopy of the parental gene ZDHHC20. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ZDHHC20
Full Name zinc finger DHHC-type palmitoyltransferase 20
Also known as 4933421L13Rik|DHHC-20|DHHC20
Coordinate chr13:21372571-21459346
Strand -
Gene summary Enables protein-cysteine S-palmitoyltransferase activity and zinc ion binding activity. Involved in peptidyl-L-cysteine S-palmitoylation. Located in intracellular membrane-bounded organelle and plasma membrane. Is integral component of Golgi membrane. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ZDHHC20P3
Bonobo Pan paniscus ZDHHC20P3
Gorilla Gorilla gorilla ZDHHC20P3
Orangutan Pongo abelii ZDHHC20P3
Green monkey Chlorocebus sabaeus ZDHHC20P1
Crab-eating macaque Macaca fascicularis ZDHHC20P2
Rhesus Macaca mulatta ZDHHC20P3
Baboon Papio anubis ZDHHC20P1
Golden snub-nosed monkey Rhinopithecus roxellana ZDHHC20P4
Sloth Choloepus didactylus ZDHHC20P3
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse - (ARCHS4)

Related Sequence

>ZDHHC20P4
GACTTTTGCTCCCACAAGCCCTGCCTCGAAGGCGGGGAAGCTGGGCCAGGAGCAGCCCAGAGCGTCTGAGTTGCCGCCCAGCCAGGGCTCCTGCGCTCCCCAGAACGGTGGGACGCGGGGGTCGGCAGCCTCCAGCTGAACATGGCGCCCTGGACGCTGTCTCGCTGCTGCCACTGCGTCATGGGCTGGGTGCCGGTGCTCCTCATCACCTTCGTGGTCATCTGGTCCTACTACGCGTACGTGGTGGAGCTGTGCGTGTTTACTATTTTTGGAAATGAAGAAAATGGAAAGACCGTGTTTTACCTTGTGGCTTTCCCTCTGTTTTTTTTATGTTTGTATGGTCCTATTGGATGACAATTTTCACATCTCCTGCTTCCCCCTCCAAAGAATTCTACTTGTCCAATTCTGAAAAGGAACGTTATGGAAAAGAATTCAGCCAAGAAAGACAACAAGAAATTTTGAGAAGAGCAGCAAGAGCTTTACCTATCTGTACCACGCCAGTTTCAAAAACTATCAGATATTGTGAAAAATGTCAGCTGATTAAACCTGATCGGGCGCATCACTGCTCAACATGTGACTCATGTATTCTTAAGATGGATCATCACTGTCCTTGGGTGAATAACTGTGTGGGATTTTCTAATTACAAATTCTTCCTGCTGTTTTTATTGTATTCCCTATTATATTGCCTTTTCGTGGCTGCCTACAGTTTTAGAGTACTTTATAAAATTTTGGACGAATGAACTGACAGATACGCGTGCAAAATTCCACGTACTTTTTCTTTTCTTTGTGTCTGCAATGTTCTTCATCAGCGTCCTCTCACTTTTCAGCTACCACTGCTGGCTAGTTGGAAAAAATAGGACAACAATAGAATCATTCTCTGCACCCACATTTTCATGTGGACCTGATGGAAATGGTTTCTCTCTTAGATACAATAAAAATTGGAGACAAGTCTTTGGTGATGAAAAGAAATATTGGCTACTTTCAATATTTTCAAGCTTGGGTGATGGTTGCAGTTTCCAACTCGCCTTGTAGGGATGGGTCCAGAACAAGCTTCTGTTACAAACCAGAATGAGTATGCCAGAAGTGGCTCAAATCAGCCTTTTCCTTTCAAACCACTTAGTGAATCCAAAAAACTCTTGTTGGACAGTGAATTTTCACTCAGTGGCTAGAGAATAGAGCTGAAGAAGGCATCGTCATACCAGGTGTATGAAAACATTATAGACTGATGTTTTCAATTTCATTTGCAAGAAAATGATCAATGGAATGAAATAATTGAAGTATAACAGAAGACATTTTTTTAAAAAAGAAAGCCTTTGTACAGTTCCTGGGATCCACAGAAGCACTACTCCAGAGCAGGACGATGCCTTAATCTTAAGTGTCCATTTGTGCAGCATTGACTTAGAGCTACAAAAGTGACTTAATGTTATTCTGGAAATAACTCTTACCTGTTATGAGATGCTATAATGAGCTATCATCACATTTTAACATGTAAATGTATTTTTCAATACCTGAATTACATTATTAGCATTGTGAGTATCCATGTAAATTTTCACTCCAAAAACACAAGCTTAAAAACTTGTCTTAAGTACATCTAGGGCAAATGATGACTGAAAGTGAATAATATCCAAATTACCATTGCTTGTACTGTATAAGGAAAACTGCTTTTTTAAATTGGGCATTTGCTAATTTATAATTACTATTTTGTACTTTTCAACATTTTAAATCACATTTTTATTGTTGGCTGTAACAGAAGGATTCAGATATCTAAACATCATTTAGAACATAGAACACTTTGGTCTAATGCATTGAAAGCTTAGTTATAAGCAGTAATACAACCATGTAGCGGAGCATGTACTCAAGGCTTAAAGGGAACTCGGCAGTGTAAGAAATATTTTGGGTTCTCTCTGCTTTTTTATGACTTTTTTGGTTGAAATTTCAGGGGTATGTCCATGGGCAGAGAAACACAGAGGTACATGTGCTGGAGAAATACTGGACACAGTAGGAAGAGGTGTAAGTGTTCAGAAGAAAAGCTAAGAGGAATGTTGTCATCTGTTAAAATAATAGTTTGAGTTTTAATGGTAGTTAGAATAAAGAATGCTGTTGACGTGACTTTCAAATTTCAGTGTAGGTAATGACCAAAAATTACTTTGAAACTTTTAGAGTAATTCTGTAACAGCTTAAACGTGACTTAAAATGCAATTCAAACTAGGCaCTTTAGGATAAGTTTTCCTCCTGGCTGTCAGTTAGTTATTCTAACCCGAGTGGTCATTTAACATCCCGTCTCTGAGAAGTGGATTCTATCCACTCTTAGATGCACAATCTTAAATCTGACTTCCTAAAAGCAACCCCTTTAGGACT
>XM_006719797.1
ACTTTTGCTCCCACAAGTCCTGCCTCGGAGGCGGGGGAGCTGGACCAGCAGCCGCCTGGAGCGTCCGAGTCACCGTCGCCGGGGCTCCCGCGCTCCCCAGAACGGTGGGACGCGGGGCTCGGCAGCCGCCAGCGGAACATGGCGCCCTGGACGCTGTGGCGCTGCTGCCAGCGCGTCGTGGGCTGGGTGCCGGTGCTCTTCATCACCTTCGTGGTCGTCTGGTCCTACTACGCGTACGTGGTGGAGCTCTGCGTGTTTACTATTTTTGGAAATGAAGAAAATGGAAAGACCGTTGTTTACCTTGTGGCTTTCCATCTGTTCTTTGTTATGTTTGTATGGTCCTATTGGATGACAATTTTCACATCTCCCGCTTCCCCCTCCAAAGAGTTCTACTTGTCCAATTCTGAAAAGGAACGTTATGAAAAAGAATTCAGCCAAGAAAGACAACAAGAAATTTTGAGAAGAGCAGCAAGAGCTTTACCTATCTATACCACATCAGCTTCAAAAACTATCAGATATTGTGAAAAATGTCAGCTGATTAAACCTGATCGGGCGCATCACTGCTCAGCCTGTGACTCATGTATTCTTAAGATGGATCATCACTGTCCTTGGGTGAATAACTGTGTGGGATTTTCTAATTACAAATTCTTCCTGCTGTTTTTATTGTATTCCCTATTATATTGCCTTTTCGTGGCTGCAACAGTTTTAGAGTACTTTATAAAATTTTGGACGAATGAACTGACAGATACACGTGCAAAATTCCACGTACTTTTTCTTTTCTTTGTGTCTGCAATGTTCTTCATCAGCGTCCTCTCACTTTTCAGCTACCACTGCTGGCTAGTTGGAAAAAATAGAACAACAATAGAATCATTCCGCGCACCCACGTTTTCATACGGACCTGATGGAAATGGTTTCTCTCTTGGATGCAGTAAAAATTGGAGACAAGTCTTTGGTGATGAAAAGAAATATTGGCTACTTCCAATATTTTCAAGCTTGGGTGATGGTTGCAGTTTTCCAACTCGCCTTGTGGGGATGGATCCAGAACAAGCTTCTGTTACAAACCAGAATGAGTATGCCAGAAGTAGTGGCTCAAATCAACCTTTTCCTATCAAACCACTTAGTGAATCAAAAAACCGCTTGTTGGACAGTGAATCTCAGTGGCTGGAGAATGGAGCTGAAGAAGGCATCGTCAAATCAGGTGTATGAAAACATTATAGACTGGTATTTTCAATTTTCATTTGCAAGAAAATGATCAGTGGAATGAAATAACTGAAGTATAACAGAAGATATATTTTTTAAAACGGAAAGCCTTTGTACAGTTCCTGGGATTCACAGAAGCACTACTCCAGAGCAGAATGATGCCTTAATCTTAAGTGTCCATTTGTGCAGCATTGACTTAGAGCTACAAAAGTGACTTAATGTTATTCTGGAAATAATACTTACCTGTTATGAGTTGCTATAATATGAGCTGTCATCACATTTTAACATGCATATGTATTTTTTGATACCTGAATTACATTATTAGAATAAGTATCCATATACATTTTCACTCCAAAAACACAAGCTTAAAAACTTTAAAGTACATCTAGGGCAAATGGTGGCTGAAAGTGAATAATATTCAAATTACTGTTGCTTGTACTGTATAAGGAAAACTGCTTTTTTAAATTGGGTATTTGCTAATTTATAATTACTATTTTATACTTTTCAACATTTTTAATAACTTTTTTTATTGTTGGCTATAACAGAAGGATTCAGATATCTAAATATCATTTAGAACATAGAACACATTGGTCTAATTCATCGAAAGCTTAGTTATGAGCATTAATACAACCATGTAGTAGAGCAAGTGCCCAAGGTTTAAAGGGAACTTGGCAGTATAAGAAATATTTTGGGTTCTCTCTGCTATTTTATAGCTTTTTTTGTTGAACTTTCAGGGGTATGTACATGGGCAGAGAAACACAAAGGTACATGTGCTGGAGAATACTGGACACAGTAGGAAGAAGTATAGGTGTCCAGAAGAAAATCTAAGAGGAATATTGTAATTTGTTAAAAAAAATAGTTTTGAGTTTTAACAGCAGTTAGAATAAAGCATGCTGTTGACTTCACTTTCAAATTTCAGTGTAGGTAATGACTAAAAATTACTTTGAAACTTTTTACAGTAATACTGTAATAGCTTAAACAGTGATTTAAAATGCAATTTAAACTAGGCAAAAAAAACTTTAGAGTAAGTTTTCCTCCTGGCTGTCAGTTGGAAATTCTAACCTGAGTGGTCATTTTACATTCCCAGTCTCTTGAGAAGTGGATTCTACTCTTAGACGCACAGTCTGAAGTCTGACTTCCTAACGGCAACCCCTTTATGACTAGACACATTTCTCCTTTTTCCTTTTAAAATCTAAGCGACAGGAGGTGTTGCATTAACTCCAAGGAAAAGTACAGAATAAACAATGTAGAAATGTCACTCCTCATTTACACCTTTTAGacagacagacacacacacacacacacCCCCCCCAAAATAATTGATTGCTTCCAGTGAGTGGGTGGAGATGAATCTCAGCAGCATCTGTGAGTACTACAGGTTGGAGCTTCCTGTCTGTAAAATGGGACTGCAGGGGAGGGGGTGTTGTGAATAAGTTGGACTGGATGACTTCTAACATTCTGTGATGCCTAATTTTGCAAAATCACTTTTCATTCACCCAATAAAtttttttcttcttttttccacagagttttgctctgtctcccaggcaggagtgcagtggcgggatcttggctcgctgcaacctctgccttccaggttcaatagagtctcctgcctcagcctcccaagtagctgggattacaggctcatgccaccatgcccggctaattttcacatttttagaagagacgaggtttcaccatgttgaccaggctgatcactaactcctgacctcaaataatccacccacctcagcttcccaaagtgctgggattacaggcgtgagccaccacgccccgccCCGGTAAATTTTTTGGAGTACCTTCTGTATGCTAAATAATAAACTAGGAATAGCTCTGTCATTTCCTAGTACAGCATAAATTTTATGGTTGCTACTGTAGGTTTATAATTTGTTTATAATTTGGCCTAATTTCCATCAGCCATACTAATATTGGATTTTAAAAGGAGGCAACTTTTTTTCTTTTTGAACCAAAGGAATGAGTTAGCTTTGAAAACATAATTTGGGATATTATAGTATGGATTCTTCTACCTTTGTTTCAACTCCTTAGTAATCTTGATTCTAGCAAACTAGAATGAGATTTAAGAGATACCAATTATTgctgggtgtggtggctcatgcctgtaatcccagcactttgggaggccaaggctggcggatcacctgaggtcaggggttcgagattagcctggtcaaaatggcaaaaccctgtctccactaaaaatacaaaaaaaccccaaaactgtccaggcatggtggcacacgcctgtagtcccaactactcgggaggtggaggcaggagaatcacttgaacccaggaggtggaggtcgcagtgagccgagatcgtgccactgcactccagcctgggcgacgagtgaaactccatctcaaaaaTATATATATATATCAATTACCAACTAAAAACATAACTCCAGTTTGGCAGTTTGCATATTATAAGGAGATAAATGTTAAAACATACTTGACTACTTTCAGAAATGTTCTCCTGGTACTTTTTGCATTTCTACATTCAGATAAAAAGATTTGCATGCACCTGGCTAACGCCAAGGGAACTTCATTTTTTTCTTCACTATTATGCACTTTCATGGTATAGTCTTTCTCAGTTCTTTTAATTTTTGTTATTTAACATCTTTAATAGCACAGCAAACATCTTTTCAGAAATTTTCAGTTAAAGCCTTTGAATTACTTATCTTTGATTTAATTTACAGCCAGCATTTTGCCACGTTCTAAATAATATTTAGCTCAACTGATTCATACGTATTAATGACCATTCTAGCAAAGGCCTACAAGTGGTGTGGGAATCAGGGAAAGGCTGCCTCTTTGGTATCTCAACTGGTATTGATTATTGCTATCAACTATTTGGGGAGAAAAAATCAAAATGAAGCCCTGTCAAATTTTAGAAGTACTATCTTTGGTCCTTCAAACACTTTGTGATGACACCTTAAGAAAAATAAAGTTGAAGTTCAGGTCTTGCCATTGCCATTACAGACAAATTAGGAGACTTGGTTTACCTGGGAACAAATTTACTTGAATATTCAGTACCTGAAACTATGCCAAACCAAAGAGCAGCTGCAGTACATTCGTTATTTTAAATGAACAAGTTTACAAAGTTTATTTTCATCTATACGTAAGGATGATTTTTTTAAAACTTTTTACATATTAGTGGTTATGATCCAATGTGTCATGAGTGAATTTAACTGTAAGGTGGTTTAAATCAAATATGCAATGTTTACTTGAATTGTATTTCTATTAGCAGATTTTGACTATGTTTACAGGACGGTTTAAATTAAGGATTATCAGGCATGTGAGATCTTTCAGTTATCTTTAAAGTAGATGTATATTAAGGGCTTAGATTTAGGATCTACATATTCTGGGCATTGAATAGGCAGTAACTTACAAATAAGTTTTGCTTACCTTTTGTTCTAGGGACTAGCACTGCTATCAATGGAAAGTATTTTTAACTAATCTGTTATTAAGAAAGTCATATTTTTGCATTTCAGCCAAAATAAAGACCGCCTGTAATAATCTGTTAGAAACAGATAATACATGTCTGAAATCCATATGTTTCATATGATCTAAACTGTATTTTCCAATTTAAATTAAAAATGTAATATAGATTCAGAAAGGTTCATATTTTTCTAATGACTTCATTCTATATTATTTTGTTAGGTTGCATAAAGAAGCAAGGAATTGTACTTGTATTAAAAGATGAAGAAAGCTATTAGGTATATTTGTACATGACTGCAAATGAGTCTATGCCCGTTTAAAAGAAAAGATGGACACTATTTTAAAGTGAGCTTTAATATGCTTTTATATAAACAAATTTGAAGTACAGTTTAGTTTGGTTGTGTTTACCTAACAAGTACCATAAGCCTTGTGTTTGTTCTTATTTGTATAATCCTAGCCTGTGACTTAATGTTGATGCTTTGCTTTGTCTTTTGGCTGGCCTAACCTACATTGACATGTACACAGAACATTTTAAAACTTTTTTTTTCAAAAGTCATAATGAATTACTTTATTAATAAACAAAGTCTTGTATTTGAA

Publications

PMID - Link Title
No publications available for this retrocopy