Summary

Retrocopy Name	MAP7P1
Species	Homo sapiens
Coordinates (hg38)	chr1:42811944-42813778  UCSC
Coordinates (T2T)	chr1:42682425-42684259  UCSC
Coordinates (hg19)	chr1:43277615-43279449  UCSC
Strand	-
Parental Sequence	NM_001388337.1
Parental seq. overlap	1640 bp
Parental seq. overlap (%)	37.9%
Genomic Region	Intragenic (SVBP)
Retrocopy Summary	MAP7P1, located on chr1:42811944-42813778, is a retrocopy of the parental gene MAP7. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	MAP7
Full Name	microtubule associated protein 7
Also known as	E-MAP-115|EMAP115
Coordinate	chr6:136342734-136550422
Strand	-
Gene summary	The product of this gene is a microtubule-associated protein that is predominantly expressed in cells of epithelial origin. Microtubule-associated proteins are thought to be involved in microtubule dynamics, which is essential for cell polarization and differentiation. This protein has been shown to be able to stabilize microtubules, and may serve to modulate microtubule functions. Studies of the related mouse protein also suggested an essential role in microtubule function required for spermatogenesis. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2010]

Homology

	Species	Scientific Name	Retrocopy
	Chimpanzee	Pan troglodytes	MAP7P1
	Bonobo	Pan paniscus	MAP7P1
	Gorilla	Gorilla gorilla	MAP7P1
	Orangutan	Pongo abelii	MAP7P1
	Gibbon	Nomascus leucogenys	MAP7P1
	Green monkey	Chlorocebus sabaeus	MAP7P1
	Crab-eating macaque	Macaca fascicularis	MAP7P1
	Rhesus	Macaca mulatta	MAP7P1
	Baboon	Papio anubis	MAP7P1
	Golden snub-nosed monkey	Rhinopithecus roxellana	MAP7P2
	Marmoset	Callithrix jacchus	MAP7P1
	Mouse lemur	Microcebus murinus	Without Homology
	Mouse	Mus musculus	Without Homology
	Rat	Rattus norvegicus	Without Homology
	Chinese hamster	Cricetulus griseus	Without Homology
	Rabbit	Oryctolagus cuniculus	Without Homology
	Pig	Sus scrofa	Without Homology
	Cow	Bos taurus	Without Homology
	Sheep	Ovis aries	Without Homology
	Dolphin	Tursiops truncatus	Without Homology
	Horse	Equus caballus	Without Homology
	Dog	Canis familiaris	Without Homology
	Panda	Ailuropoda melanoleuca	Without Homology
	Cat	Felis catus	Without Homology
	Pale spear-nosed bat	Phyllostomus discolor	Without Homology
	Velvety free-tailed bat	Molossus molossus	Without Homology
	Greater mouse-eared bat	Myotis myotis	Without Homology
	Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
	Greater horseshoe bat	Rhinolophus ferrumequinum	Without Homology
	Egyptian rousette	Rousettus aegyptiacus	Without Homology
	Sloth	Choloepus didactylus	Without Homology
	Tasmanian Devil	Sarcophilus harrisii	Without Homology
	Opossum	Monodelphis domestica	Without Homology
	Platypus	Ornithorhynchus anatinus	Without Homology
	Chicken	Gallus gallus	Without Homology
	Turkey	Meleagris gallopavo	Without Homology
	Zebra Finch	Taeniopygia guttata	Without Homology
	Budgerigar	Melopsittacus undulatus	Without Homology
	Painted Turtle	Chrysemys picta	Without Homology
	Lizard	Anolis Carolinensis	Without Homology
	Frog	Xenopus tropicalis	Without Homology
	Zebrafish	Danio rerio	Without Homology
	Drosophila	Drosophila melanogaster	Without Homology

Expression

This retrocopy transcript is not present in the ARCHS4 database for expression quantificationThis retrocopy transcript is not present in the GTEx database for expression quantification.

Related Sequence

>MAP7P1

CAGGAGAACAGAAGCTACAGATAAGAAAACCATTGATCAGAGAAATGGTGATATAGCCAAGGGAGCTCTCACTGGAGGAACAGAGCTATCTATACTTCCGTGTACAACAAATGCTCTGGGAAATGGAGAACCAGTTGCCAGCCCATATGTGGTTACCTCACACCAATCAAAAGTGACTGTGGAGAGCACCCCCAATTTGGAAAACCAAATGAAAATGGAGTATCTCTGTTCAGAATGAAAATTTTGAAGAAATTATAAATTTACCCATTGGATCGAAACCATCCAGATTAGATGTCACTAACAGTAAGAGCCCAGAAGTTCCTTTGAATCCAGTTTTGGCCTTTGATGATGAAGGAACGCTTGGGCCCCTGGCTCAGGTAGATGGTGTTCAAACACAACAGACTGCAGAAGTTAAATGCGTATTTTTTCTGAAGAACCAACGTCAAAATTTAACGAGAATTTCTATAATTAATGGAATTCCTTTCATGCTATAAAAGAGCATCCCCTCTTCCAGTTTTCTAAAGATTTCTTGACCATCATTTTGAAAAGATTTATTTAAACTAGCTAAAGACAACAGACAGGATAGCTTTCCTAATAATTTTCATCAGTAGAAAAAAAATACTCCTCATTCTTCAGTACTTTCAAATGGCTTTTTCCAGTGTGCTCCTTCTTAGCAAATTAGTATTTTTCTGCGTTATTTAAAAGACAAGAGGATTTGGCTATAAAATGATTGACTAGGATTGACTAGGCATGATTTTTTTTCACATAGTTTGGTCTTAAAGCTTAACAGCTTAAAATTGGCAAAAAAAACTTGTGCCTTTTACCATGTAATACTTGAAAAGTAAGTACCTCTTTGCTACAAGTAGAATGAATAGGGAAAAGTTTAAGCCTGTTTTTTTAAAAATATTATTTTAAAGAGCTCTATTTGTAGAGGCAAATTATAGGCAGATTACCAGTTTCTTATAAATACAAACTTGTACATGGACATTCTGCAAACCCAGCTGTCATATTCTTGCAACTACTTTTGCAAAAGCATACTAAAAGGTTTTAAAATGTGAAAAAACATTATTTTTTCAGAGCAAGAAAATAATTTACTGTTGTCTTCAATAATGTGTAAAGTTTTTCCAGATAAACTAATCAAATAAATTAGAACAATGTGACAACATTGCAAATTTGTCATTAGATGCATTCCTTCTAACGTTACCAGGGGAGGATGTTACTGATGATTCAAGGCTGTTTCTGAAGTCTGTGTGTTGCTACTGTCCCCAGTGATGGTGGGACTTACCTCTGTCCTACTTGATCACAAATTATGTTAGGGGGAAATAAAGATTTAATATTTCATTAAATAAAAAAGAAATTTGGTTTTGCTCATTTAAGAGCAACAAGAAAATGGTGGTGTGTTGACTGTGTTTGGCCGCAGGGCACAGACCTTTATGGAAGTCCTCGCTCTGCATGGCATCCACCAGCTTTTCACCTTTCATTCTTATTCTTCACTTTTGCTGCTGAGCCTAGCTGTACAAATTTGCACTTTCATTTGCTAATGTAAATTCAATTTATTTTACCATTTTAGAGACTACTAATGATTAAATGTAAGAGAGGACACATGTTTTTATGTGGAGTGTTAAAAAAGATAAATTTATACCACTGTAATGTGCTGGATTTATTAAAAGAGATTGGTTAAACTGCTCGGTTGAATGAGAGACTTCCTCTATTGTACTCTTTTTTTTTTTTTTAAATCCAAGGATATTGTCTTTAGTAACAGCTTGTAACTTGTTAAAACATTAATTTGGGGTTTTTCCCTATTCTTAATTGTCTATGTACACATAGTAATTATG

>NM_001388337.1

GTTGAGCATTGCTCAGCACCGCTGGTAGCAACTGCCCAGAGCGGTAGGGATTGAGGGTGGGGGGTGTGCTGGGTGTAATAGAGACAGGTTTTTCTCCTTTGGAGAATTCCCCAGTATAGGTTCTGTCCTTGAAACTTGAGTTGCAGAGGAGACACTCCACGTTGTGATCTCTGGTGGGAGCCAGCATAGTTCTTCCCTTGCCTGTCTTCACCAGAGGGTTTCAGGGACATGGCACTGGTGGCCCTCATGACTGGTGCTGCCAACCCTGTTCTTATACATGCTCTGGGGTGGTAAGAATGTCAGGAAAGTAAAGTGAGCTGCTCTGTGGGTACCAGCCATGCCTTCATTCATCCAGGGGCTTGCAAACATTGTTATGATAGACAACCTGGCCCAGAAAAGAAGAAAAAGCCTTTCTTCCTCAGGCTTCTGTCTCCATACTGAGGAGTCTACTGCTGCTTGTGCAAGCAAAACTCTTTCTCCTCCCATCCTGCTGCGCTGCCGCTGAGAGGAAGAGGGAGCTGCCCAGCGGCCTCACGCTGTAACCCTCTGCTGCAGCGGTATGCCTGGATCAGCTACAGCTCTCCGACATGAGAGACTGAAGAAGACCAATGCAAGGCCAATTCCTCTTGGTTTATTCACCATTAATGAGGAAGACGAACAGCAAAAGAATGGAAATTCCAGAAGACCAAAAGCACCCGACAGCTACAAAGTGCAAGATAAGAAAAATGCCTCCAGCCGCCCTGCCTCTGCAATTTCAGGACAAAATAACAACCACTCAGGAAATAAACCAGACCCTCCGCCTGTGTTACGTGTTGATGACCGGCAGCGGCTGGCCCGGGAGCGACGTGAGGAACGGGAGAAACAGCTAGCTGCAAGAGAAATAGTGTGGTTAGAAAGAGAAGAGCGAGCCAGGCAGCACTACGAGAAGCACCTggaagagcggaagaagaggttggaggagcagaggcagaaggaggagcggaggagggctgctgtggaggagaagcggaggcagagacttgaggaggaCAAAGAACGCCACGAAGCTGTTGTACGGCGCACAATGGAAAGGAGCCAGAAGCCAAAACAGAAGCATAACCGTTGGTCGTGGGGAGGCTCTCTCCATGGGAGCCCTAGCATCCACAGTGCAGCTCGCCGCCTGCAGCTCAGCCCATGGGAGAGCAGCGTTGTTAACAGACTCCTGACGCCCACACATTCGTTCCTGGCCAGAAGTAAAAGCACAGCTGCCTTGTCTGGAGAAGCAGTTATCCCCATTTGTCCTCGTTCAGCATCTTGCAGCCCCATCATCATGCCCTACAAAGCTGCACACTCTAGAAATTCGATGGATCGACCAAAACTCTTTGTAACACCACCTGAGGGCTCTTCTCGCAGGAGGATCATTCATGGCACAGCGAGCTATAAAAAAGAAAGAGAGAGAGAAAATGTACTCTTCCTCACATCTGGCACCCGAAGGGCTGTATCTCCATCTAATCCCAAAGCAAGACAACCAGCTCGCTCCCGACTTTGGCTTCCGTCCAAGTCTCTTCCTCATTTGCCTGGCACACCCAGACCGACATCCTCCTTGCCACCCGGCTCAGTCAAAGCTGCTCCTGCTCAGGTCCGGCCCCCATCCCCCGGCAACATCCGCCCTGTCAAGAGGGAAGTCAAAGTGGAGCCTGAGAAGAAAGATCCTGAGAAGGAACCTCAGAAAGTTGCCAATGAGCCCTCACTAAAGGGCAGAGCACCTTTAGTGAAGGTAGAAGAAGCCACAGTTGAAGAGCGGACACCTGCTGAACCAGAAGTTGGCCCTGCTgctccagccatggccccagctccagcctcggccccagctccagcctcggccccagctccagccccggtccccaccccagccatggtctcagccccGTCATCCACTGTGAATGCCAGTGCTTCTGTTAAGACTTCTGCAGGCACCACCGACCCAGAGGAGGCCACAAGGCTTCTAGCTGAGAAGAGGCGGCTGGCCCGAGAGCAGAGAGAAAAGGAAGAAAGGGAGAGGAGGGAGCAGGAAGAGCTTGAAAGACAAAAGAGAGAGGAATTGGCTCAACGTGTGGCTGAAGAGAGGACGACTCGCCGTGAGGAGGAGTCGCGCAGGCTGGAAGCCGAGCAGGCCCGGGAGAAGGAGGAGCAGCTGCAGCGGCAGGCGGAGGAGCGGGCGCTGCGCGAGCGGGAGGAGGCAGAGCGCGCCCAGAGGCAGAAAGAAGAAGAAGCTCGCGTTCGTGAAGAAGCAGAGAGGGTCCGGCAGGAACGAGAGAAGCATTTCCAGAGAGAAGAGCAAGAGCGCCTGGAGAGAAAGAAGCGACTTGAGGAGATTATGAAAAGAACCAGGAGAACAGAAGCTACAGATAAGAAAACCAGTGATCAGAGAAACGGTGATATAGCCAAGGGAGCTCTCACTGGAGGAACAGAGGTGTCTGCACTTCCATGTACAACAAACGCTCCGGGAAATGGAAAGCCAGTTGGCAGCCCACATGTGGTTACCTCACACCAGTCAAAAGTGACAGTGGAGAGCACTCCCGATTTGGAAAAACAACCAAATGAAAATGGTGTATCTGTTCAGAATGAAAATTTTGAAGAAATTATAAACTTACCCATTGGATCTAAACCATCCAGATTAGATGTCACCAACAGTGAGAGCCCAGAAATTCCTTTGAATCCAATTTTGGCCTTTGATGATGAAGGGACACTTGGGCCCCTGCCTCAGGTAGATGGTGTTCAGACACAGCAGACTGCAGAAGTTATATGAGTGTTTCTTCTGAAGAACCAAAGCTGAAATTTAATGAGAATTTCTACAATTAATGGAATTCCTTTCCTGCTATAAAGGAGCATCCCCTCCACCCGTTTTCTAGAGTTCTTGACCATCATTTTGAAAAGATTTATTAAAACTAGCTAAAGACAACAGACTGGATAGCTTTTCTAATAATTTTCATCAATAGGAAAAAAGAAATACGTCTCATTCTTCAATACTTTAAAATGGCTTTTTCCAGTGTGCTCCTTCTTAGCAATCAATATTTTTCTGCATTCTTTAAAAGACAAGAGAATTTGGTTATAAAAGAAATGGGCTGACTAGGCATGATTTTTTTGGTCTTAAAAGCTTAACATGTAAAATTGGCAAAAAAAATTTTTTACCTTTTATAATACTTGAAAAATAAGTACCTCTTTGTTCTACAAGTAGAATGAATAGGAGAAGAGTTTAAGCCTGTTTTTTTAAAATATTATTGCAAAGAGCTCTATTTGTAGAAGCAAATTATAGGCAGATTACCAGGTTCTTATAAATACAGCTTGTACATGGACATTCTGCAAACCCAGCTGTCACATTTTTCTTGCAACTCCTTTTGCAAAAGCAGACTAAAATGTTTTAAAATGTGAAAAAACATTATTTTTTCAAAGCAAGAAAATAATTTACTGCCCTCTTACATAATGTATTTATAAAGTTTTTCCAGATAAACTAATCAAATAAATTAGAATAATGTGACAACATTACAAATTTAATTTGTTAGCTGCATTCCTTCTGATGTTACCACGATAGAATGTTACTGATGATTCAGGGCTATTTCTGAAGTCTGTATGTTGCTGCTGTCCCCAGTGATGGTGGACTTATCTTTGCCTTACCTGATCACAAATTATGTTGGGGAAAATAAAGATTTAATATTTCTTTAAATAGAAAAAGAATTTGGTTTTGCTCGTTTAAGAGCAATGAGAAAATGATGGAATGTTGACTGTGTTTGGCACACAGGACACGGACCTTCATGGAAGTCCTTGCTCTGCGTGGCATCTGTCAGCTTTTCACCTTTCATTCTTATTCTTCACTTTTGCTGCTGAGCCTAGCTGTACAAACTTGCACTTTCATTTGCTAATATAAATTCAGTTTTATTTTACCATTTTAGAGACTACTAATGATTAAATGTAGAAGGAGAGGGTGCACATGTTTTTATGTGGAGTGTTTAAAAGATAAATTTATACCACTGTAATGTGCAGCTTTTATTAAAAGAGAAATTGGTTGAACTGCTAGGTTGAATGAGAGACTTCATCTATTGGACTATTTTTTTTAATCCAGGCATATGGTCTTTAGTAATGGCTTGTAATTTGTGAAAACATTAATTTGGGGGTTTTCCCTGTTTTCAGTTGTCCATGTACACATAGTCATTATATTAGAAAAGAAATCTGTTCAACAAACTTGTTTAATTTGTTTAAATCAACATAGCATGAAACACCAAATAAAATGTTTGACATAGTTTTA

Publications

PMID - Link	Title
No publications available for this retrocopy