Retrocopy Name | SYF2P1 |
|
Species | Homo sapiens | |
Coordinates (hg38) | chr14:30541837-30542179 UCSC | |
Coordinates (T2T) | chr14:24739656-24739998 UCSC | |
Coordinates (hg19) | chr14:31011043-31011385 UCSC | |
Strand | - | |
Parental Sequence | NM_015484.5 | |
Parental seq. overlap | 293 bp | |
Parental seq. overlap (%) | 16.7% | |
Genomic Region |
Intergenic |
|
Retrocopy Summary | SYF2P1, located on chr14:30541837-30542179, is a retrocopy of the parental gene SYF2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | SYF2 |
Full Name | SYF2 pre-mRNA splicing factor |
Also known as | CBPIN|NTC31|P29|fSAP29 |
Coordinate | chr1:25222276-25232502 |
Strand | - |
Gene summary | This gene encodes a nuclear protein that interacts with cyclin D-type binding-protein 1, which is thought to be a cell cycle regulator at the G1/S transition. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. [provided by RefSeq, Jul 2008] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | SYF2P2 |
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Gorilla | Gorilla gorilla | SYF2P2 |
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Gibbon | Nomascus leucogenys | SYF2P2 |
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Crab-eating macaque | Macaca fascicularis | SYF2P1 |
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Baboon | Papio anubis | SYF2P1 |
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Bonobo | Pan paniscus | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>SYF2P1 |
AGGAAATAGAAGAGGAAAAACCCTGATCTGGGAATTTCATATTATGCTGCTGCCCAGGTATGCCAGTGCCATGGTCGACGAAACAGATCAAACCTGACATAGAAATTAAAACTAAGAGAAAACTATGGACAGGAGTTCTACCCAATATCCAGCAGCCTTCTTCACGGAATATGTGCCTTCCACAGAGGAAATCGATAGGATGCTCATAGACTGGGAAAAGCAAATTGAAGCATGAGACAAATATAGCTCAAGATGTCCCTATAATAATGATGCAGATATTGACTACATTAATGAAAGGGATGCTAAATTCAGCAAAAAGGTAGAAGGATTCTATGGAAAATAT |
>NM_015484.5 |
CTTGTTGCCGGAAGTGGGAAGAGAGAAAGGTTGTGATGGCGGCTATAGCTGCATCCGAGGTGCTGGTGGACAGCGCGGAGGAGGGGTCCCTCGCTGCGGCGGCGGAGCTGGCCGCTCAGAAGCGCGAACAGAGACTGCGCAAATTCCGGGAGCTGCACCTGATGCGGAATGAAGCTCGTAAATTAAATCACCAGGAAGTTGTGGAAGAAGATAAAAGACTAAAATTACCTGCAAATTGGGAAGCCAAAAAAGCTCGTTTGGAGTGGGAACTAAAGGAAGAGGAAAAGAAAAAGGAATGTGCGGCAAGAGGAGAAGACTATGAGAAAGTGAAGTTGCTGGAGATCAGTGCAGAAGATGCAGAAAGATGGGAGAGGAAAAAGAAGAGGAAAAACCCTGATCTGGGATTTTCAGATTATGCTGCTGCCCAGTTACGCCAGTATCATCGGTTGACCAAGCAGATCAAACCTGACATGGAAACATATGAGAGACTGAGAGAAAAACATGGAGAAGAGTTTTTCCCAACATCCAATAGTCTTCTTCATGGAACACATGTGCCTTCCACAGAGGAAATTGACAGGATGGTCATAGATCTGGAAAAACAGATTGAAAAACGAGACAAATATAGCCGGAGACGTCCTTATAATGATGATGCAGATATCGACTACATTAATGAAAGGAATGCCAAATTCAACAAGAAAGCTGAAAGATTCTATGGGAAATACACAGCTGAAATTAAACAGAATTTGGAAAGAGGAACAGCTGTCTAATCCCTTCAAGAACTGTTTATAGAAGCTTGAGAATGGGGTAAAAATTTCTGCTAGCAAAATCAAGTTCTTTTTGAAATTTTATCAGTAATCCAGAATTTAGTAGTCCATGCCTTCTCACTCAGCATTTAGAAATAAAAATGTGGTTTCTTAAACGTATATCCTTTCATGTATATTTCCACATTTTTGTGCTTGGATATAAGATGTATTTCTTGTAGTGAAGTTGTTTTGTAATCTACTTTGTATACATTCTAATTATATTATTTTTCTATGTATTTTAAATGTATATGGCTGTTTAATCTTTGAAGCATTTTGGGCTTAAGATTGCCAGCAGCACACATCAGATGCAGTCATTGTTGCTATCAGTGTGGAATTTGATAGAGTCTAGACTCGGGCCACTTGGAGTTGTGTACTCCAAAGCTAAGGACAGTGATGAGGAAGATGGCAGTGGCCACCGGAGGACTGGAGCAGTCCCTCCTCATGGCGGCCTGTGACCAAGGTCGGGGAGGAGTGGAGCTATCCTTCCATGATCTGATCATGTACAGTTCCCTTTTTAAAAAGCAATAAATGCTTGGGATTAGAATTTCTAACATTTTTAGTCTATCATTTAAAACAAACATTTGTATATATACATTTGTTTATATACATACATGCTTCCATTCTACAAACACTGAAAGAATATTTTATTATGGGAAATTCCATACACCCAATACCCCTGGTGAGTcccatatacccagtaccctgttcaacaatcattaactcatggccagtcctgcttcatctttatttccatttactttcttcatgactcttattttgacgcatatactagatatataatttcatctataattattttagtatgtatctctgaaagataaagacttaaatgaccacaatactattatcacTGCAATAGATTTATTTTTATAAAACTCCAGAGGGAAAGGTTGTTATTTTTTCTCTATGTTGAATTAAATGCTAAATATCTAA |
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