Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name HIGD1AP17
Wait
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr14:30964356-30964636  UCSC
Coordinates (T2T) chr14:25161875-25162155  UCSC
Coordinates (hg19) chr14:31433562-31433842  UCSC
Strand +
Parental Sequence NM_001099669.2
Parental seq. overlap 243 bp
Parental seq. overlap (%) 8.8%
Genomic Region Intragenic (STRN3)
Retrocopy Summary HIGD1AP17, located on chr14:30964356-30964636, is a retrocopy of the parental gene HIGD1A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HIGD1A
Full Name HIG1 hypoxia inducible domain family member 1A
Also known as HIG1|RCF1a
Coordinate chr3:42782908-42804490
Strand -
Gene summary Acts upstream of or within negative regulation of apoptotic process. Located in mitochondrion and nucleoplasm. Part of protein-containing complex. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes HIGD1AP18
Bonobo Pan paniscus HIGD1AP18
Gorilla Gorilla gorilla HIGD1AP17
Orangutan Pongo abelii HIGD1AP16
Gibbon Nomascus leucogenys HIGD1AP17
Green monkey Chlorocebus sabaeus HIGD1AP17
Crab-eating macaque Macaca fascicularis HIGD1AP6
Rhesus Macaca mulatta HIGD1AP6
Baboon Papio anubis HIGD1AP6
Golden snub-nosed monkey Rhinopithecus roxellana HIGD1AP4
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Adipose SubcutaneousMuscle SkeletalArtery TibialArtery CoronaryHeart Atrial AppendageAdipose VisceralUterusVaginaBreast Mammary TissueSkin Not Sun ExposedMinor Salivary GlandBrain CortexAdrenal GlandThyroidLungSpleenPancreasEsophagus MuscularisEsophagus MucosaEsophagus Gastroesophageal JunctionStomachColon SigmoidSmall Intestine Terminal IleumColon TransverseProstateTestisNerve TibialSkin Sun ExposedHeart Left VentricleBrain CerebellumWhole BloodArtery AortaPituitaryBrain Frontal CortexBrain CaudateBrain Nucleus AccumbensBrain PutamenBrain HypothalamusBrain Spinal CordBrain HippocampusBrain Anterior Cingulate CortexOvaryBrain Cerebellar HemisphereLiverBrain Substantia NigraKidney CortexBrain AmygdalaCervix EctocervixFallopian TubeCervix EndocervixBladderKidney Medulla00.20.4
log10(TPM+1)

Related Sequence

>HIGD1AP17
AACACAGATGTTTCTCTTTCTTCATATGATGATCAGGGATCCAAACATATCCAAAAAGCTAAAGAGGCACCATTTGTCCCCCATTGGAATAGCAGGTTTTGCAGCAATTGTTGCAGTGGATATACAAATTGAAGAACAGGAGAAATATTAAAATGTCCCTTCACCTGATCCACATGCATGTGGCAGCCCAAGGCTTTGTGATGGGAACAATGACTGTTGATGTCAACTATTCCATGCACTGAGAATTATGGGCAAAACCTAAGCCTTAGAAGAAGAGATGC
>NM_001099669.2
GTGCGCCTGCAGGGATCGGAAGCCGGTTGGGGTGTGAGAGGTTTTCTCGCTCTAGAACCTCATAGAAATTCTTTCTCAGGGAGATTCTTCAAGCAATCACTATGTCAACAGACACAGGTGTTTCCCTTCCTTCATATGAGGAAGATCAGGGATCAAAACTCATTCGAAAAGCTAAAGAGGCACCATTCGTACCCGTTGGAATAGCGGGTTTTGCAGCAATTGTTGCATATGGATTATATAAACTGAAGAGCAGGGGAAATACTAAAATGTCCATTCATCTGATCCACATGCGTGTGGCAGCCCAAGGCTTTGTTGTAGGAGCAATGACTGTTGGTATGGGCTATTCCATGTATCGGGAATTCTGGGCAAAACCTAAGCCTTAGAAGAAGAGATGCTGTCTTGGTCTTGTTGGAGGAGCTTGCTTTAGTTAGATGTCTTATTATTAAAGTTACCTATTATTGTTGGAAATAAACTAATTTGTATGGGTTTAGATGGTAACATGGCATTTTGAATATTGGCTTCCTTTCTTGCAGGCTTGATTTGCTTGGTGACCGAATTACTAGTGACTAGTTTACTAACTAGGTCATTCAAGGAAGTCAAGTTAACTTAAACATGTCACCTAAATGCACTTGATGGTGTTGAAATGTCCACCTTCTTAAATTTTTAAGATGAACTTAGTTCTAAAGAAGATAACAGGCCAATCCTGAAGGTACTCCCTGTTTGCTGCAGAATGTCAGATATTTTGGATGTTGCATAAGAGTCCTATTTGCCCCAGTTAATTCAACTTTTGTCTGCCTGTTTTGTGGACTGGCTGGCTCTGTTAGAACTCTGTCCAAAAAGTGCATGGAATATAACTTGTAAAGCTTCCCACAATTGACAATATATATGCATGTGTTTAAACCAAATCCAGAAAGCTTAAACAATAGAGCTGCATAATAGTATTTATTAAAGAATCACAACTGTAAACATGAGAATAATTTAAGGATTCTAGTTTAGTTTTTTGTAATTGCAAATTATATTTTTGCTGCTGATATATTAGAATAATTTTTAAATGTCATCTTGAAATAGAAATATGTATTTTAAGCACTCACGCAAAGGTAAATGAACACGTTTTAAATGTGTGTGTTGCTAATTTTTTCCATAAGAATTGTAAACATTGAACTGAACAAATTACCTATAATGGATTTGGTTAATGACTTATGAGCAAGCTGGTTTGGCCAGACAGTATACCCAAACTTTTATATAATATACAGAAGGCTATCACACTTGTGAAATTCTCTTGTCTAATCTGAATTTGCATTCCATGGTGTTAACATGGTATATGTATTGTTATTAAAGTAAGTGACCCATGTCAAATGTCTTTTATTTATTTCATGAGGAAAAGCTTTCTGTAGAGGAACAAATTTGAGAACAAGTTTCAGGAAATTGTCTTTTTTGTTGTTGTTCTCTAATCATGTTCTCCTTTCTGTTTCAACGATTTTAAAAATATTTTACTTTATGGTATGTTTTATTTTTTTTCCTTTTGTGGGTAATTTTTGTTCTATTGATTATCCATATAAAttttttttttttttttttgagacggagttattctctgtcatcttggctggcgtgcagtggcacgatcttggctcactgcaacttccatcccccaggttcaagtgattctcttgcctcagcctcctgagtagctgtgattacaggcatgcaccaacatgcctggctaatttttgtatatttagtagagacgaggtttcaccatgttggccaggctgatcttgaattcctgacctcaggttatccacctgcctcggcctcccaaagtgctaggattacaggcgtgagccaccacgcccagcTGATTATCCATATAATTATAACACTCTTCTATTTATTTTCAGTCACCAATAATTCCTTTTGAGCAATATTTAAGCCTAGCATATTTCTTCCTTCCCTCCTCCTCTACTAACCAGTTCTGGTCGATATATTATTGGATTTTACTCTTATACtgtttgtttgtttgtttgtttgtttAttttgagacagagtcttgctctgttgctgaggctggagtacagtggtgtgatctgagctcacggcaccctccacctcctagcttcgtgcgattctgatgcttcaaccttccgagtagctgggattacaggcatgcgccaccatgtcgggctaatttttgtgtttttagtaaaggcgaggtttcaccatgttggatgatcttgaactcctggcttcaagagatctatctgcctcagcctcccaaagtgctgggattacaagcataatccaccacacctgaccTACTTTTGTATGTTAAATGTGATTATACTTctctttgacttgtcagcttagctttagctgatacactctggtgcccaactattattgtatcagtgaacttccactttcttttccttttctctcaatttttgttgtatcattcctaccttgtgaggacatataatatttacattctgttgtcatcctcacatttcttagttccacagtttaaatgtatttgaaactcaaaacattcccattaatctcttggtcagctgaaattaatgatttaatagtttccttaaaaaagactcatggaacaatttccctaaatttttgccatgtcaaatatgtttatctgtagcctttacacagtaaaaacaatttggctagataatacaattctcagttcatatttttctttggaatattaaagtattgctatagagaa

Publications

PMID - Link Title
No publications available for this retrocopy