Retrocopy Name | PHKBP2 |
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Species | Homo sapiens | |
Coordinates (hg38) | chr14:36533626-36533816 UCSC | |
Coordinates (T2T) | chr14:30722909-30723099 UCSC | |
Coordinates (hg19) | chr14:37002831-37003021 UCSC | |
Strand | - | |
Parental Sequence | NM_000293.3 | |
Parental seq. overlap | 157 bp | |
Parental seq. overlap (%) | 2.9% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | PHKBP2, located on chr14:36533626-36533816, is a retrocopy of the parental gene PHKB. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | PHKB |
Full Name | phosphorylase kinase regulatory subunit beta |
Also known as | - |
Coordinate | chr16:47461299-47701523 |
Strand | + |
Gene summary | Phosphorylase kinase is a polymer of 16 subunits, four each of alpha, beta, gamma and delta. The alpha subunit includes the skeletal muscle and hepatic isoforms, encoded by two different genes. The beta subunit is the same in both the muscle and hepatic isoforms, encoded by this gene, which is a member of the phosphorylase b kinase regulatory subunit family. The gamma subunit also includes the skeletal muscle and hepatic isoforms, encoded by two different genes. The delta subunit is a calmodulin and can be encoded by three different genes. The gamma subunits contain the active site of the enzyme, whereas the alpha and beta subunits have regulatory functions controlled by phosphorylation. The delta subunit mediates the dependence of the enzyme on calcium concentration. Mutations in this gene cause glycogen storage disease type 9B, also known as phosphorylase kinase deficiency of liver and muscle. Alternatively spliced transcript variants encoding different isoforms have been identified in this gene. Two pseudogenes have been found on chromosomes 14 and 20, respectively.[provided by RefSeq, Feb 2010] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | PHKBP1 |
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Bonobo | Pan paniscus | PHKBP1 |
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Gibbon | Nomascus leucogenys | PHKBP1 |
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Green monkey | Chlorocebus sabaeus | PHKBP1 |
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Crab-eating macaque | Macaca fascicularis | PHKBP1 |
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Baboon | Papio anubis | PHKBP1 |
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Golden snub-nosed monkey | Rhinopithecus roxellana | PHKBP1 |
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Dolphin | Tursiops truncatus | PHKBP1 |
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Dog | Canis familiaris | PHKBP1 |
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Panda | Ailuropoda melanoleuca | PHKBP1 |
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Gorilla | Gorilla gorilla | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Horse | Equus caballus | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>PHKBP2 |
TACAGACAGATCGCTGTGGAGTTACTAATGGTTATATCCGTTATACTGAAAACAAAATTCTTAGTTGGACTTTCAAGACAAAAAGTAGATCTAGACAAACTGATGAAAGAAGCATTTCATGAATTTCAAAAATATGAGATTCAACTAAAGGAAGCTGAAAAACAAGGTGAGATGACTTACTTTAACAACAG |
>NM_000293.3 |
aaggcggcgaccggagcgcgatggcgggggcggcggGACTCACGGCAGAAGTGAGCTGGAAGGTCTTGGAGCGAAGAGCTCGGACCAAGCGCTCAGGCTCAGTTTATGAACCTCTTAAAAGCATTAATCTTCCAAGACCTGATAATGAAACTCTCTGGGATAAGTTGGACCATTATTACAGAATTGTCAAGTCAACATTGCTGCTGTATCAAAGTCCAACTACCGGTCTCTTTCCCACTAAAACATGCGGTGGTGACCAGAAGGCCAAGATCCAGGACAGCCTATACTGCGCTGCTGGGGCCTGGGCTTTGGCTCTTGCATACAGGCGAATTGATGATGACAAGGGAAGGACCCATGAGCTGGAGCACTCAGCTATAAAATGCATGAGAGGAATTCTCTACTGCTATATGCGTCAGGCCGATAAGGTCCAGCAGTTTAAGCAGGATCCACGCCCAACAACATGTCTTCACTCTGTTTTCAATGTGCATACAGGAGATGAGTTGCTTTCCTATGAGGAATATGGTCATCTTCAGATAAATGCAGTGTCACTTTATCTCCTTTACCTTGTGGAAATGATTTCCTCAGGACTCCAGATTATCTACAACACTGATGAGGTCTCTTTTATTCAAAACCTTGTATTTTGTGTGGAAAGAGTTTACCGTGTGCCTGACTTTGGTGTCTGGGAAAGAGGAAGCAAATATAATAATGGCAGCACAGAGCTACATTCGAGCTCGGTTGGTTTAGCAAAAGCAGCTCTAGAAGCAATTAATGGATTCAACCTTTTTGGCAACCAGGGCTGTTCGTGGTCAGTTATATTTGTGGATCTCGATGCTCACAATCGCAACAGGCAAACTTTGTGCTCGCTGTTACCCAGAGAATCAAGATCACATAATACAGATGCTGCCCTGCTCCCCTGCATCAGTTATCCTGCATTTGCCCTGGATGATGAAGTTCTTTTTAGCCAGACACTTGATAAAGTGGTTAGAAAATTAAAAGGAAAATATGGATTTAAACGTTTCTTGAGAGATGGGTATAGAACATCATTGGAAGATCCCAACAGATGCTACTACAAGCCAGCTGAAATTAAGCTATTTGATGGCATTGAATGTGAATTTCCCATATTTTTCCTTTATATGATGATTGATGGAGTTTTTAGAGGCAATCCTAAGCAAGTACAGGAATATCAGGATCTTTTGACTCCAGTACTTCATCATACCACAGAAGGATATCCTGTTGTACCAAAGTACTATTATGTGCCAGCTGACTTTGTAGAATATGAAAAAAATAACCCTGGTAGTCAAAAACGATTTCCTAGCAACTGTGGCCGTGATGGAAAACTGTTTCTTTGGGGACAAGCACTTTATATCATCGCAAAACTCCTGGCTGATGAACTTATTAGTCCTAAAGACATTGATCCTGTCCAGCGCTATGTCCCACTAAAGGATCAACGTAACGTGAGCATGAGGTTTTCCAATCAGGGCCCACTGGAAAATGACTTGGTAGTTCATGTGGCACTTATAGCAGAAAGCCAAAGACTTCAAGTTTTTCTGAACACATATGGTATTCAAACTCAAACTCCTCAACAAGTAGAACCCATTCAGATATGGCCTCAGCAGGAGCTTGTGAAAGCTTATTTGCAGCTGGGTATCAATGAAAAGTTAGGACTCTCTGGAAGGCCAGACAGGCCCATTGGCTGCCTCGGGACATCAAAGATTTATCGCATTCTAGGAAAGACTGTGGTTTGTTACCCGATTATTTTCGACCTAAGTGATTTCTACATGTCTCAGGATGTTTTCCTGCTGATAGATGACATAAAGAATGCGCTGCAGTTCATTAAACAATATTGGAAAATGCATGGACGTCCACTTTTCCTTGTTCTCATCCGGGAAGACAATATAAGAGGTAGCCGGTTCAACCCCATATTAGATATGCTGGCAGCCCTTAAAAAAGGAATAATTGGAGGAGTCAAAGTTCATGTGGATCGTCTACAGACACTAATATCTGGAGCTGTGGTAGAACAACTTGATTTCCTACGAATCAGTGACACAGAAGAGCTTCCAGAATTTAAGAGTTTTGAGGAACTAGAACCTCCCAAACATTCAAAAGTCAAACGGCAAAGCAGCACCCCTAGTGCTCCTGAACTGGGACAGCAGCCGGATGTCAACATTAGTGAATGGAAGGACAAACCCACCCACGAAATTCTTCAAAAACTGAATGATTGCAGTTGTCTGGCTAGCCAAGCCATCCTGCTGGGTATACTGCTCAAAAGAGAAGGCCCCAACTTCATCACAAAGGAAGGTACCGTTTCTGATCACATTGAGAGAGTCTATAGAAGAGCTGGCAGCCAAAAACtttgGTTGGCGGTGCGCTACGGGGCTGCATTTACCCAGAAATTTTCTTCCTCTATAGCCCCACACATTACTACTTTTCTGGTACATGGGAAACAGGTAACTCTGGGTGCCTTTGGGCATGAAGAAGAAGTTATCTCTAATCCTTTGTCTCCAAGAGTGATTCAAAACATCATCTATTATAAGTGTAACACCCATGATGAGAGGGAAGCGGTCATTCAGCAAGAACTGGTCATCCATATTGGCTGGATCATCTCCAATAACCCTGAGTTATTCAGTGGCATGCTGAAAATACGAATCGGGTGGATCATCCATGCCATGGAGTATGAACTTCAGATCCGTGGCGGAGACAAGCCAGCCTTGGACTTGTATCAGCTGTCACCTAGTGAAGTTAAACAGCTTCTGCTGGATATTCTGCAGCCTCAACAGAATGGAAGATGTTGGCTGAACAGGCGTCAGATCGATGGGTCTTTGAATAGAACTCCCACCGGGTTCTATGACCGAGTGTGGCAGATTCTGGAGCGCACGCCCAATGGGATCATTGTTGCTGGGAAGCATTTGCCTCAGCAACCAACCCTGTCAGATATGACCATGTATGAGATGAATTTCTCTCTCCTTGTTGAAGACACGTTGGGAAATATTGACCAGCCACAGTACAGACAGATCGTTGTAGAGTTACTTATGGTTGTATCCATTGTACTGGAAAGAAACCCCGAGCTAGAATTTCAAGACAAAGTAGATCTAGACAGACTGGTCAAAGAAGCATTTAATGAATTTCAAAAAGATCAGAGTCGGCTAAAGGAAATTGAAAAACAAGATGACATGACTTCCTTTTACAACACTCCTCCCCTGGGAAAAAGAGGAACATGCAGCTATTTGACAAAGGCGGTGATGAATCTGCTGCTGGAAGGAGAAGTCAAGCCAAACAATGATGACCCGTGTCTGATTAGCTAGTGGGGAAGGTGTAGGAAGCTCTGTTGAGACACATGTTCTGAAGTGTGTTGTGTTTCATGTTCAAGCTTAATCAAGGCAGCCATTAATATACGAACTGAGCATGCTGGGGAGGTGAATGCCACATCCTTGGCGGGGTTATGGACCTCTTGCATGTCATAGCCAATCTAACGGTAATGGTAAATGCTTTTAATCAAGCAGGAAAAAGTTCTCATGATTATGCCAACTATAATAGTAATCCTCACTGAGTGATAAAAATAGTTTATGAATTGAAAATTTGCCGCTGCATGTTGTATGATCAAATAGTTCATCAAAATGAATCTTTGCTCTTTGGACTGAATTCTTACCATACTGCCATTAAAATAAATTTGCCAACTAGTAATGCATACTGGAAATCAAAAGATACTGAAAGAATGGTGAACTTCTCTTAGTGGTATTGTCATGCTAAAAGATGTTAATATACATCATAAAAGCAAAGTCAGCCAGCTGATATTTTGGTTCTCAAAAACTGCATTATTAATAATATTTTAGTATACAGAGCTATTCTACAGTTTTTACATTGTAAACATGACTGTGGTTTTGTATTTGCTAAATATAGGGGTTGGACTAAAATATAATAAATCTGTACCTTATCAAACATTTTCTTTGAGCTCCTGCTAAAAATAGGACATGTCTATGATTGTTCAAAAATATGTTAAATTTAggctcagcacagtagctcacacctgaaatcttagcacttcgggaggctgaggcaggtggatcacttgaggttaggagttcaagaccagcccagccaacatggtgaaaaccctgtctctactaaaaatacaaaaattagccaggcatgatggtgcatgcctttaaacccagctactgaggaggctgaggcatgagaattgcttgaaccaggagacggaggttgcagtgagctgaaatcctgccactgcacaccagcctgggtgacagagcgagactccatctcaaaaaaaaaaaaaaaaaagaaaaagaaaaaAATATGTTAAATTTAAGGACTGTTAACCTACGTTCTACTAGTAAAAACAACATTAAGGGTCATTAAATTTTATTTCTGAATTAATGAACATATCTGGACATTTTTTGTTCCTAGGTTCACAAGATTGAGCTTCAAACTCCCGAGTGTTTTCATTTAATTGATTTAGAGGTAGAATGGAAGAGAATCTGTGGTACCTACCATTATACACATTTAGTTGCCCAGTTTACTTAAACTTTAATGAAAGTAGAAAGTAGATTAAACATTTAAATTTTATTTCTTTCCTAAATAGAAAAAAAAAAGGCCCATGAGTTTGAGCCCTTGCCCCAAAGAGAGTTGTTTTTCTGATCAATCTTACTGGAGTTTCACCTGAGAAGATAGATTTGTCACATAAAAAATGCAGCTTATTTGTAGTGTTTTGAAAGGATGTAAGAAAGGATGAGTGGCTTCAGTATTGAGTCAATCGATATCAAATGAATGGATGTGTGAGCACATGGAAAAATCTGCTGTCAGTCACATTTCTCATAACATTGAGGTACAGTGCCGAGATCTTGCATAAGAAATTGTATGGATATTAGTTGGCAAAATTGAAATGAATGAGACACAGTTGGGCCCTAAAGAACTAAGGAGGGGGATTGACAAAGAATAGAATTAAACTACTTGACTCAATATGTTAAGAGAGTTTATGAAAAGATAGTCGTGAAGGGTGAAGCTAATTTGTAAAACTAATGCCTGAAAAAAACGTAAGCATGAAGTCCATGGAGAGGGAATTGAGAGCTGACACTTCATAACTGGAGAAACTGGAAATTAAAGAAAGGGAAACAAAAGACTTAAAATTTTTGTTTGCCGAAATTTTTACGAAAGTAAACTGTGTTGTAGTTTTAAGAATTTTTTTAAAAAATCTGATTAGCTGAGCAAAGTTACCAGAAAACTGCTATCCTAGTTGAAATCAAACATTACTTGCAAATGTGTTTTCTGAGTGTTAGCTTCCTGCTTAAATGTTACATATGCAAAATTCTGAAGTTTTCCTGTGCTACTCCtgaaagcattcagaatctgtgacacgtattgacttcatgctttgagattcaaaatttattgttctgaaagttatatttagaatcagtaaatcttgatattcaccttta 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PMID - Link | Title |
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No publications available for this retrocopy |