Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name STK16P1
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr14:49676675-49678509  UCSC
Coordinates (T2T) chr14:43874721-43876555  UCSC
Coordinates (hg19) chr14:50143393-50145227  UCSC
Strand +
Parental Sequence NM_001330213.2
Parental seq. overlap 1316 bp
Parental seq. overlap (%) 42%
Genomic Region Intragenic (POLE2)
Retrocopy Summary STK16P1, located on chr14:49676675-49678509, is a retrocopy of the parental gene STK16. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name STK16
Full Name serine/threonine kinase 16
Also known as KRCT|MPSK|PKL12|PSK|TSF1|hPSK
Coordinate chr2:219245469-219250337
Strand +
Gene summary Predicted to enable protein serine/threonine kinase activity. Involved in protein autophosphorylation. Located in cytosol; nucleoplasm; and plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes STK16P1
Bonobo Pan paniscus STK16P1
Gorilla Gorilla gorilla STK16P1
Orangutan Pongo abelii STK16P1
Gibbon Nomascus leucogenys STK16P1
Green monkey Chlorocebus sabaeus STK16P1
Crab-eating macaque Macaca fascicularis STK16P1
Rhesus Macaca mulatta STK16P1
Baboon Papio anubis STK16P1
Golden snub-nosed monkey Rhinopithecus roxellana STK16P2
Marmoset Callithrix jacchus STK16P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>STK16P1
ATGGGCCTGAGCCATGCACCTCCTCTGAAACTACCCTGTGCCCTGCCTTTGAGGCCTGACAGGTGTGGGAGCAGGAGCTGCCCAAAAGTGGGCTGGGGTTGGAGGAAGCATCCTGGTCGTTGCTATGTGCCCTGAGGCTTTAAGGCACCTGACCCCACCCTTGCTGAACTGGCATCACCAGGACCTGTTTACTCTAGATGAGAATCATGATCCCTGGGCGCTTAGTGCATTGCCTGGAAGAGCCCACTCATCCTGGACGAGCCCTTTGGCAGCCTCAGACAGTCCTTGAGGAGGATGACTGAGACATCATGGGCCATGCACTGTGTGCCTGCTCTTAGGGAAATGTCATCATTGACAATAGCTATTTCTTCATCCAGAACCTGGGGGAGAGTGGGTTCAGCCATGTGGACCTAGTGGAGGGGTTACAGGATGGACACTTCTACGCCCTGAAGCGAATCCTGTGTCACGAGCAGCAGGACTGGGAGGAGGCCCAGCCAAGAAGCAAACATGCATCACCTCTTCAATCACCCCAACATCCTTTACCTCACGGCTTACTGTCTGAGGGAGTAGGGTGCTAAGCATGAGGCCCAGCTGCTGCTTCCGTTCTTTAAGAGAGATATACTGTGGAATGGAGAGAAAGGCCGAAGGACGATGGCAACTTCCTGACTTAGGATCAAATCCTTCAGCTCCTGCTGGGTATCTACAGCGGCTTGAGGCCATTCATGCCAAGGGTTAGGCCCACAGGGACCTGAAGCCCACCACTATCTTGCTTGGAGACGAGGGGCAGCCAGTTTTAATACACTTGGATGCCATGAATCAAGCATGCCTCACATGAAGGGCTCCCACCAGGCCCTGACCCTGCCGGACTAGGCGACCCAGCAGTGCACCATCTCCTACTGAGCCCTAGAGCTCTTCCCTGAGCAGTCACTGTGTCATTGATGAACAGACTGATGTCTGGTCCCTGGGCTGTGTGATATATGCCACAATGTTTGGGGAAGGCCCTTACGAAATGGTGTTCAAGAAACGTGACAGTGTGGCCCTTGCTGTGCAGAACCAACTCAGCATCCCACAAAGCCCCACGCATTCTTCAGGAGTGTGGCAGCTCCTGGCCTCAATGATGACTGTGGACCTGCAGCAGCACCCTCACAATGCTTGCCTCCTCAGTCAGCTGGAGGTACTGCAGCCCCCAGCTCCTGGCCAGCACACTGCCCAAATCTGAACAAAGCAGTGGCCATATTGAGAAGGTGGCGCCTTGTGCCTTGGAAAGAGGCTCCCATCACTCACTGGAATCTCTACCCATTCTTTCTTTATTTTAcTGCTTTTCTGCTTTCTTACCCCCAAGAGCAACACCTGGACAAGGGGCTTTACTGAGTGGGGGTGGAATAGGGGTTGGGAAAAGGAAAACTGATGCGATATGGTACATGGCTCTGTGCAGGACTGTTGAGCTCATATTACGTTCTGCCTCCAAATCTGGGAGCAAGAGAATGTATAAACAGAAGAATAAAGTGAATGCAGATTGGTGT
>NM_001330213.2
AGCACTGCTTCCGGTCGGTGGCGCTTCTCTCTGGCCCGAGCCAGGTCAGTCCGGCAGTGCAGATGGCCCATCCCGGGCTCTGGGCTCCTAGACCGGGGTGGGCCCTGCCAGGAGTGGGCCTGAGCCTCGCACGTCCTCTGAAACTACGCTATGCTCTGCTTTTGCGGCGCGATGGGCGTGGGAGCGGGGGCTGCCCAAAGATGGGCTGGGGTTGGAGGAAGTGGCCCGGTAGCCGCTGTGTGTCCTGAGGCCGTAAGGCGCCTGACCCCACCCCTGAAGCTGGCGACGGAGCAGGGCCTGTTTTCTCTACACTATAGTCATGATCCGCTGGGCCCCCAGCGCATCTCCTGGAAGAGCCCACTCACCCTGGACGAGCTCTTCGGTAGCCTCAGACCGTCCTTGAAGAGGATGACTGAGACATTATGGGCCACGCGCTGTGTGTCTGCTCTCGGGGAACTGTCATCATTGACAATAAGCGCTACCTCTTCATCCAGAAACTGGGGGAGGGTGGGTTCAGCTATGTGGACCTAGTGGAAGGGTTACATGATGGACACTTCTACGCCCTGAAGCGAATCCTGTGTCACGAGCAGCAGGACCGGGAGGAGGCCCAGCGAGAAGCCGACATGCATCGCCTCTTCAATCACCCCAACATCCTTCGCCTCGTGGCTTACTGTCTGAGGGAACGGGGTGCTAAGCATGAGGCCTGGCTGCTGCTACCATTCTTCAAGAGAGGTACGCTGTGGAATGAGATAGAAAGGCTGAAGGACAAAGGCAACTTCCTGACCGAGGATCAAATCCTTTGGCTGCTGCTGGGGATCTGCAGAGGCCTTGAGGCCATTCATGCCAAGGGTTATGCCCACAGAGACTTGAAGCCCACCAATATATTGCTTGGAGATGAGGGGCAGCCAGTTTTAATGGACTTGGGTTCCATGAATCAAGCATGCATCCATGTGGAGGGCTCCCGCCAGGCTCTGACCCTGCAGGACTGGGCAGCCCAGCGGTGCACCATCTCCTACCGAGCCCCAGAGCTCTTCTCTGTGCAGAGTCACTGTGTCATCGATGAGCGGACTGATGTCTGGTCCCTAGGCTGCGTGCTATATGCCATGATGTTTGGGGAAGGCCCTTATGACATGGTGTTCCAAAAGGGTGACAGTGTGGCCCTTGCTGTGCAGAACCAACTCAGCATCCCACAAAGCCCCAGGCATTCTTCAGCATTGCGGCAGCTCCTGAACTCGATGATGACCGTGGACCCGCATCAGCGTCCTCACATTCCTCTCCTCCTCAGTCAGCTGGAGGCGCTTCAGCCCCCAGCTCCTGGCCAACATACTACCCAAATCTGAAAAAGCAGCATGTTGAGAAGATGGCCCCTTGTGCCTTGGAAAGAGGTTCCCATCCCTCATTGGAATCACCACCCATTCCATCCAGGACTTCTCTTACACTTGGGGGTAGCGGGGTCAGGACAATCATCTCAGTCCTGCATCTTTTCTTCTGCTTTCTTCCCTCCAAGAGCAAAACCTGGGCAAGGGGACTTACTGAGTGGGGGTGGGTGGGGGTTGGGAAAAGGGAAACTGGTGGGATATGGAACATGGCTCTGAGCAGGACTGTTGAGCTCACATAGTGTTCTGACTCCAAATCTGGGAGCAGGAGAATGTGTAAACAAGAATAAAGTGGAAGCAGGTTGGTGTAGATCTTAGTCTCAGTGTTCCTGGAGTGAGAGAAGAGGTGCAAGGGGCCCAAAGTCAGGTTGCCATTTCAGGCGAACTGCCTGGGAAGGAGGAATGGTGCAGAGTCGGCAATGGTGTGACTTCATTCTACAGGAGGTTGGTTAGCAGTGGACAGTTCTAGCTTGTCTTAGATCAAAACTTAAAGCTGCTTGGGCTCAAGCTGGCATCTGCCTGTGTCAAGAACTAGGGCCCCCTAAAAACACTCAACTAGTTCTTTCCTTCCTTCACTCCTGGGGTGAGTAGCTTAGTCAAAGCTGCCTAGCCGGTTTGCTAGGCAAGGGCCTCTGGGTGGAGACACCTGAGGAAGCTTTGAGACAGGTAGATTACAGGTCTCCCATCCTCAGCCTAGGGGCGAGGGGAGTGGAGGTGGCAGCGGCAGCTGTTTTGGCCTGTGTCTCCCTGATCGTTCAAGCTCATAcatggttaatgattaatgaggcagtgtggtgtggcagtatccagctgccacttcctgcctactctgctgagtaaacaggggccctgtcttagctgggcttcaaacctgttccctAGGGAAGGGCTCTGTTCCCTGAATCACCAGGGAGGAAAGGCAAGGGCAGGGTTGGCATCTCCTGCTCTTTTGTGATCCAAGCCTCCTCCCCCGAACCATGTCTACCCCACAGTATGACATCAGCATGGGGCCTGGGGCTCCTGTTAGCAAAGTTGAAGCTTTCCCCAGGGCCCTAGCAGGAGTCTCCCACTAGCTAGCACAGAGGCTGAGGCCAGAAAGAAATCACAAACAGAGGGGAGATGACCTGACTTTTAATGGCACAGCCCCAGCTCCAGCAAAGCAGCAAGACAGGAAGCTATGCAAAGCTGCTCAGAGGTGCAGTGGCACAAACAACTCTAGGAGATCGCCTGTGTTCCCTCCCATCCCCCAAGCTTATGACGTGGCTCCATGCCCAGGAACTCTGGGCCAGCCCAGCCCCACTCCCAAACCCTCATAATGCACAGAGGAGCCTGGGCCAAGCCTTGCTTCCAGAGTTGGTAAATGTAGAGGCAGCAGGAAGAACAGGGTAGCAGTCTAACTTTCAAAGACAGAAACCACTGGATTATACTCCTACTTGGAAAGGAGCTGAAGACTCATCCTTCAACAGTTTGTGCCTGGATTTTGGTCCTCATTTCCTCCCTATACTGAGTAACCCTAGGACTTCAATTTAAAGTCCCTGGGGTTATGCTTCCTGGGCCTGGCAAGAACCCCTTTGCAGGTCTCACCTTCAGCGATGGAAGGGATAAGGGTCATGAAcagcaaacagagcagcagcagcatgaaggggaaggcagcagaagctcaagcaCTCAGAGGGAACAAGAAACCGTGCAAGGAAACTGTTTATTTCGAAAGGATTTTGCAATAAACATAGTGAATAGGC

Publications

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