| Retrocopy Name | H1-8P2 |
 |
| Species | Homo sapiens | |
| Coordinates (hg38) | chr14:76690143-76690501 UCSC | |
| Coordinates (T2T) | chr14:70899572-70899930 UCSC | |
| Coordinates (hg19) | chr14:77156486-77156844 UCSC | |
| Strand | - | |
| Parental Sequence | NM_153833.3 | |
| Parental seq. overlap | 310 bp | |
| Parental seq. overlap (%) | 25.2% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | H1-8P2, located on chr14:76690143-76690501, is a retrocopy of the parental gene H1-8. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | H1-8 |
| Full Name | H1.8 linker histone |
| Also known as | H1.8|H1FOO|H1oo|osH1 |
| Coordinate | chr3:129543175-129555185 |
| Strand | + |
| Gene summary | Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Nucleosomes consist of approximately 146 bp of DNA wrapped around a histone octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. The protein encoded is a replication-independent histone that is a member of the histone H1 family. This gene contains introns, unlike most histone genes. The related mouse gene is expressed only in oocytes. [provided by RefSeq, Oct 2015] |
| Species | Scientific Name | Retrocopy | |
 |
Chimpanzee | Pan troglodytes | H1FOOP2 |
 |
Bonobo | Pan paniscus | LOC100993446P2 |
 |
Gorilla | Gorilla gorilla | LOC101136093P2 |
 |
Orangutan | Pongo abelii | LOC100450433P2 |
 |
Gibbon | Nomascus leucogenys | LOC100595969P2 |
 |
Green monkey | Chlorocebus sabaeus | LOC103228065P2 |
 |
Crab-eating macaque | Macaca fascicularis | LOC102128013P2 |
 |
Rhesus | Macaca mulatta | LOC702823P2 |
 |
Baboon | Papio anubis | LOC101019083P2 |
 |
Golden snub-nosed monkey | Rhinopithecus roxellana | LOC104676630P2 |
 |
Marmoset | Callithrix jacchus | Without Homology |
 |
Mouse lemur | Microcebus murinus | Without Homology |
 |
Mouse | Mus musculus | Without Homology |
 |
Rat | Rattus norvegicus | Without Homology |
 |
Chinese hamster | Cricetulus griseus | Without Homology |
 |
Rabbit | Oryctolagus cuniculus | Without Homology |
 |
Pig | Sus scrofa | Without Homology |
 |
Cow | Bos taurus | Without Homology |
 |
Sheep | Ovis aries | Without Homology |
 |
Dolphin | Tursiops truncatus | Without Homology |
 |
Horse | Equus caballus | Without Homology |
 |
Dog | Canis familiaris | Without Homology |
 |
Panda | Ailuropoda melanoleuca | Without Homology |
 |
Cat | Felis catus | Without Homology |
 |
Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
 |
Velvety free-tailed bat | Molossus molossus | Without Homology |
 |
Greater mouse-eared bat | Myotis myotis | Without Homology |
 |
Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
 |
Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
 |
Egyptian rousette | Rousettus aegyptiacus | Without Homology |
 |
Sloth | Choloepus didactylus | Without Homology |
 |
Tasmanian Devil | Sarcophilus harrisii | Without Homology |
 |
Opossum | Monodelphis domestica | Without Homology |
 |
Platypus | Ornithorhynchus anatinus | Without Homology |
 |
Chicken | Gallus gallus | Without Homology |
 |
Turkey | Meleagris gallopavo | Without Homology |
 |
Zebra Finch | Taeniopygia guttata | Without Homology |
 |
Budgerigar | Melopsittacus undulatus | Without Homology |
 |
Painted Turtle | Chrysemys picta | Without Homology |
 |
Lizard | Anolis Carolinensis | Without Homology |
 |
Frog | Xenopus tropicalis | Without Homology |
 |
Zebrafish | Danio rerio | Without Homology |
 |
Drosophila | Drosophila melanogaster | Without Homology |
| >H1-8P2 |
| GTGGGCTCAGCAAGAAGCCAAAGGCCAAAGGCAGCAGGAGCAGCTAAGGAGACGCTGAGGCTCACAGGAATATCAAAGCTGGGAGTAAGAGTTCAAAACCCACGGCTAGCAAGGTCAAGAACGGTGCTGCTTCCCCCACCAAAAAGAAGGTGGTGGCCAAGGCCAAGGCCCCTAAAAGGGCAGCTGCCCAGGGTGCTGGGCAGGAGCCAAACACCAAGGCAGCTTCTCCTGCTAGGGGCAGTGGGTCCAAGGTGGTGCCTGCACACCTGACCGGGAAGACAGAGGCCTCCAAGGGCCTGAGAAAGCCTGGGTTGTCCATCAAGGCCTCATCATCCAAAGTGTTCAATCAGAGGGCTGAG |
| >NM_153833.3 |
| CTCACACCCGGGTGAGGGGTCTGCTGGCTGCACCTGTCGGTCTCATGGCTCCTGGGAGCGTCACCAGCGACATCTCACCCTCCTCGACTTCCACAGCAGGATCATCCAGGTCTCCTGAATCTGAAAAGCCAGGCCCGAGCCACGGCGGTGTCCCACCAGGAGGCCCGAGCCACAGCAGCCTCCCGGTGGGACGCCGCCACCCCCCGGTGCTACGCATGGTGCTGGAGGCGCTGCAGGCTGGGGAGCAGCGCCGGGGCACGTCGGTGGCAGCTATCAAGCTCTACATCCTGCACAAGTACCCAACAGTGGACGTCCTCCGCTTCAAGTACCTGCTGAAGCAGGCGCTGGCCACTGGCATGCGCCGTGGCCTCCTCGCCAGGCCCCTCAACTCCAAAGCCAGGGGGGCCACTGGCAGCTTCAAATTAGTTCCCAAGCACAAGAAGAAAATCCAGCCCAGGAAGATGGCCCCCGCGACGGCTCCCAGGAGAGCGGGTGAGGCCAAGGGGAAGGGCCCCAAGAAACCAAGTGAGGCCAAGGAGGACCCTCCCAACGTGGGCAAGGTGAAAAAGGCAGCCAAGAGGCCAGCAAAGGTGCAGAAGCCTCCTCCCAAGCCAGGCGCAGCCACAGAGAAGGCTCGCAAGCAAGGCGGCGCGGCCAAGGACACCAGGGCACAGTCGGGAGAGGCTAGGAAGGTGCCCCCCAAGCCAGACAAGGCCATGCGGGCACCTTCCAGTGCTGGTGGGCTCAGCAGGAAGGCAAAGGCCAAAGGCAGCAGGAGCAGCCAAGGAGATGCTGAGGCCTACAGGAAAACCAAAGCTGAGAGTAAGAGTTCAAAACCCACGGCCAGCAAGGTCAAGAATGGTGCTGCTTCCCCGACCAAAAAGAAGGTGGTGGCCAAGGCCAAGGCCCCTAAAGCTGGGCAGGGGCCAAACACCAAGGCTGCTGCTCCTGCTAAGGGCAGTGGGTCCAAGGTGGTACCTGCACATTTGTCCAGGAAGACAGAGGCCCCCAAGGGCCCTAGAAAGGCTGGGCTGCCCATCAAGGCCTCATCATCCAAAGTGTCCAGCCAGAGGGCTGAAGCTTAGGGCCAGAGGCAGGGGCGGAGAGAGACCGAGCCTCTGCCCTAGTTTTTATTCTTCAACTAACCACTGCTCTATTTATTTCATTGTAAGCTATTTATCAATAAAGACTTTTGTTTCTTTTTCCTCACAA |
| PMID - Link | Title |
|---|---|
| No publications available for this retrocopy | |