Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name BHLHB9P1
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Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr14:80981591-80985795  UCSC
Coordinates (T2T) chr14:75193786-75197991  UCSC
Coordinates (hg19) chr14:81447935-81452139  UCSC
Strand +
Parental Sequence NM_001350269.2
Parental seq. overlap 3114 bp
Parental seq. overlap (%) 55.1%
Genomic Region Intragenic (TSHR)
Retrocopy Summary BHLHB9P1, located on chr14:80981591-80985795, is a retrocopy of the parental gene ARMCX5-GPRASP2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ARMCX5-GPRASP2
Full Name ARMCX5-GPRASP2 readthrough
Also known as ARMCX5-GPRASP2-BHLHB9-LINC00630|bHLHb9|p60TRP
Coordinate chrX:102599348-102753540
Strand +
Gene summary This locus represents naturally occurring readthrough transcription among the adjacent armadillo repeat containing, X-linked 5 (ARMCX5), G protein-coupled receptor associated sorting proteins 1 and 2 (GPRASP1 and GPRASP2), basic helix-loop-helix family member b9 (BHLHB9), and long intergenic non-protein coding RNA 630 (LINC00630) genes on chromosome X. Transcripts may make use of multiple alternative promoters and polyadenylation signals in this region. Readthrough transcripts may produce proteins identical to the proteins encoded by GPRASP2 or BHLHB9. [provided by RefSeq, Apr 2017]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes BHLHB9P1
Bonobo Pan paniscus BHLHB9P1
Gorilla Gorilla gorilla BHLHB9P1
Orangutan Pongo abelii BHLHB9P1
Green monkey Chlorocebus sabaeus BHLHB9P1
Crab-eating macaque Macaca fascicularis BHLHB9P1
Rhesus Macaca mulatta BHLHB9P1
Baboon Papio anubis BHLHB9P1
Golden snub-nosed monkey Rhinopithecus roxellana BHLHB9P1
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse - (ARCHS4)

Related Sequence

>BHLHB9P1
TGAGGTCTGTTCCTTTCTAGGTTCCTGTAGAGATCTGTAGGTAGCTGTTCACTAGGGAGTTAACTAAGAAAGAGAACAAAAACTATTCATTTGGATCCAAGGTCCATCACCGCTGGTAGCTGTGGTGGCTTTGGATTGTCGGACGACCATCAGCTTCAGCAGGTCTGCACTAGGGAACAATCATTCTTCCCTAGCCCAAGCGTGCCTCTGCCCTCTGTATCGTTGACAGAGGCTGCATGTTTGGCAAGAGAACATAGTGACTGCTGAACTGAAAGTTGACTCTAACTCTCGCTACCAAGTTTTTCCCTGACACAGTGAAAGAGTATTAAGACATCAGCCTAGGACACCTTGAGAACCAAGGACAAGATGGACAGGGCCAAGTAACTGGGCTTCAACCATGACTGGGACTAAGAATAAGACAAGAGGCCAGGCCAAAGCGGAAAAGAGTCTGCTATACAAGCTAAAGCTGGAGAAGAGAGGGAGGCTACGGGTGTGGTTAGGCCTGTAGCCAATACCTGGGCCAAAGCAAAAGACAAGCCAGGGTCTCTGACAGATGCAGTGGCAGAGATGAAGGCAGTGTCTAAGAACAAGGTCGGTGCTGAGATGAAGGAAGGAGCCCCTGTCAGAGCCTAAGGCTCTGGGCAAAGCCACTGGAGATTTCAGTCCCGAGGCTGGGAATGAGTCCACCAGCTCCACATGTAAAAATGGGGCTGGTATTGATGCCTGGGTCTGGGCTGAGGAAGAGGCCACTATCAATTCCTGGTTCTGAAATGGAGAAGAGGCTGGTAATCATTCCGGTGCTAAGAATGATAAACCTGAAATTGGTGCCCAGGTCTGTGCTGAGGAGTTGGAGCCTGTGACTGGGGCCAGTTGCAAACCTAGGTCTGGGGCTGAGGAAGAGGAGGAAGAGAATGTCATTGGGAACTGGTTTTGGGAAGGAGATGATGCTAGTTTTGACCCTAATCCTCAATCTGTGAGTAGGATAGTTAGATCTCAGCCTGTGGATGAAATTAATGGAAAAAAAAAATAGGCCCAAGGACTGGTCTGAGGTAACTATCTGGCCCAAAGCCCCTGCTGTAACTCCAGCAGTATTCGGATTAGATCCCAGGCATCTAAGGCAAGCCCTCCTTCATATATTGTTTTGGCCTCAGCTGAAGAAAATGCCTATTCTTTGCCTGTGGCAACAGCCTGCCCTTGTAGGAACACTAACTCATGCTCACAGCCCATCCCTGAGTGTCCTTTTGGTTCCGACCCTTGCATCCAGACCATAGATGAGATTAGACACCAAATCAGGATTAGGGAGGTAAATGGGATTAAGCCATTTGCTTACTCTTGCAAAATGGAATGCTATGTGGACTCTGAGGAATTTGAACAACTTGTTAACTTACTTAAGTCAACTACTGATCCTCTTGTTCATAAAAGAGCACAGATTGCAATGGGTATCCATAACGTTCACCCATTTGCCCAAGAGTTTATTAATGAAATGGTATAATGATGCTTATTGAAAGCTTGCTCAGTTTTCCTTCCCCAGAAATGAGAAAATTACTAATTTTCTTATGAGTAATTACTCTGAATCCTCCTTCTGGGGATGAAAGACAATGCAAAATTGAATTACATGTTAAGCATATGTGTAAAGACACCATGTCATTTCCTTTGAACTCACCTGGACAGCAATCTGGATCAAAGATACTAGGGCAACTGACTACTGATTTTGTCCATCACTACATTGTTGCCGGTGACTTTTCAGAGCTTTTTCATTTGCCATCCTTGAGAAAGTACAAAACCAGACATCTTGTTTTGAAAGTAATTTTAAATATATCTGAAAATCCAACTGCAGCCAGAGACATGATCAATATGAAGGCACTGGCAGCATCAAAACTCATCTTTAACCATAAAGAGGCAAAAGCCAGTCTTGTTAGTGGTGTGGCCATATTTATTAACATAAAGGAGCATATCAGAAAGGGCTCAATTGTAGTTGTTGATCACTTGAGTTATAATACACTCATGGGCATTCTCAGGGAAGTTAAAGGGATTATTGAAGCAATGTAAAATGAGCCAGAGATAGAACACTTTGAACCATCTCCAAACTCTAGCAGGCTGTACATTCCCAAAGAGCCTTGTATCATATTTGGTTATTATGGTGTACAAGTTATACATTGCATCTTTAACACATAGTTACCTGTGACAAGCTCTAGGTTTGAGCTAAACTATTTTGGGGGTATCAGATGAATATCATATCACTGGCTGAAAATGTTTGTTGATTTTTTTCTTGTTTAGATTGGCATATTTTTTACATTTTATTTAAGAAAGCGAACGAGTTCGTTGTAAGTGAGCTAACTTGTTCATTAGTATCTCCTTAGATCCATCTGTGGCTTAAAATGGCAAAAAAGAAAACATCCTTGAATTTGAAATCTAGTTATAGAAGTAAGGCATACACACACACAAAGATAACTAACAGTACCTCACGTGTATACCCATGACCAAATGTGCACTCTCTACATAAAGGAGGCAGGGGTTGCTATAGGCTGTTTAATGTAAGAGAAACTACTCTTTTTCTCCTATTCCAGCCGTATCAGATACTCATTCCACAACACAGAAAGATCCAGAATTTCAGACAAATGCATTATTTGTTCAATTTTAATTTTGCTTCTACATTTATAACTCTTAAATTGTCAGGCTGTTTCATTTATGTCAAAGTCATCTCACAAAAGAGAAGGTGGATTTACAGTTCCCCTGAAGGACATTTTGAGGCGACGGCCTTCAAAGCTCAGAGACTGGTTTTAATTATCTGGCAGTGTCAGAAAAATAGTAGGTGCCCCAAACTTTGTTCAGTGAGTAAGATGGAGATTTGGAGTCATCAGCAAGGGGAACTTGTTAGATGTCCTTTGCATCTTTTTCTACCCATTTGTACTTTATCTTCCCCAAAGAGCTGAAATCATCCTGTACATTGTTTTATATCCTGAATTAAAAAGGTAATTGCTTTTGGTAATTGCTTTTTTCCTCCTTGCAAAATCATGCCTTAATTTTTTTTATCATTTGTGATTTATTCTCCTATGTGTCCTATGAAAGGCCAAAGGGCTTTATCTTTTACTAGTAGGCAAGCCTGGGCATTTCTGCATTTGTACCGGCTAACACGACAGAATAAATGTAATCGGAGAAATTTAGATCCAGAATTGCAGCTTCAACAATACAAAACAGCAAAGCTACAAGAGGCTGCTGTGCCAATCTACAAGACAGTGATTCTTAGTCGTTGGTATGGACCAGAAAGCATGCCCAGGACGTTTAGGTTATGGCTGAATTCTCTAAGACTCATGGTGGGAATTGTAATCCCTAGTCTGAGCTGAAACGGAAGTTTCTATGTGTGAAAATATGGGGTAATATGCTTTGAGGTTTTCTGACAGTTAAGAAACTAAGACAAGATCATACTGTAAATATGTATGGAACTTGCTTCCCCCCAGTTGTGTATTGTAAACATCTTTGCATGTCAATAAATATGCCTCTAT
>NM_001350269.2
GTCTTTCCCGTTCGGATCGCGGGGAAAGCAGTGGCTCCAAGTGAGCCAGAGGAGAGCTGAGGAGAGGAGGGGGAGGCCGACGACCTGGGCCCTGGGCCTCTGAAGGCCTACTTTAAGGCTGGCCAATTCTGCAAGAAAGGCAAGGAGGAGGAGACTGGCTCACAGCTCTGGAGGACCCCCTTCTGTCAGCTGTGGGGCTTGACACCACTTGAACAAGAAAAGGAGGGGGAAACTGCACCACATCAGTGAAGCCGAGTGGTCCTCCAGAGCAAAGGCCAGCCTTCCTTCCAGCTGTCTGGCCAAGGAGCTTCAGGATCTTCTAGCAAGCACCCCAGAGGCAGAAGACTGTCATCCATGGTACAGGACTGCGGCGAACAAGCTGACTGCGCAGTCACGTGGGGCTGACGGTGGGTCATGTGACCAGGCTCTGCATTAGGCCTGCCGAGAGGAGTGTTTTCTTGCATCCAGAAAAGACCTGAGAGGCGGACGACACCTGTGCTCCGCAGAGCAGAACGTGGGAGGAACGGCGGGATGTTAAGGAGCTCAAGAAGCAGAGAGTCTACCTGCCCGACGCGTTCGTGGAGAGGAGCAGCGGTTGCTGTTGGAGGAGGTCTGTTTCTTTCTAGGTTCCTGTAGAGATCTGTATGTAGCTGTTCACTTGGAAGTTAATTAAGAAAGAACAAAAACTATTCATTTGGATTCAAGGTCCATCTCCACTGGTGGCTGTGGTGGCTTTGGATTGTTGGAAGACCATCACCTTCAGCAGGTCTGCACTTGGGAACAATCATTCTCCCCCAGCCCGAGCGTGCCTCTGCCCTCTGTATCATTGACAGAGGCTGTATGTTTGGAAAGAGAACTTTGTGACTGCAGAACTGACAGTTGACTCTAATTCTTGCTACCAAGTTTTTCCCCGACCCAGTGAAAGAGTGTTAAGACTTCGACCTAGGACACATTGAGAACCAAGGCCAAGACTGGACAGGGCCATATAACTGGGCTTCAACCATGGCTGGGACTAAGAATAAGACAAGAGCCCAGGCCAAAACTGAAAAAAAGGCTGCTATACAAGCTAAAGCTGGAGCAGAGAGGGAGGCTACTGGTGTTGTTAGGCCTGTAGCCAAGACCAGGGCCAAAGCAAAAGCCAAGACAGGGTCTAAGACAGATGCAGTAGCAGAGATGAAGGCAGTGTCTAAGAACAAGGTTGTTGCTGAGACGAAGGAAGGAGCTCTGTCAGAGCCTAAGACTCTGGGCAAAGCCATGGGAGATTTCACTCCCAAGGCTGGGAATGAGTCCACCAGCTCCACATGTAAAAATGAGGCTGGTACTGATGCCTGGTTCTGGGCTGGGGAAGAGGCCACTATCAATTCCTGGTTCTGGAATGGAGAAGAGGCTGGTAATAGTTTCAGCACTAAGAATGATAAACCTGAAATTGGTGCCCAGGTCTGTGCTGAGGAGTTGGAACCTGCGGCTGGGGCCGATTGCAAACCTAGGTCAGGGGCTGAGGAGGAGGAGGAAGAGAATGTTATTGGGAACTGGTTTTGGGAAGGAGATGATACTAGTTTTGACCCTAATCCTAAACCTGTGAGCAGGATAGTTAAGCCTCAGCCTGTGTATGAAATTAATGAAAAAAATAGGCCCAAGGACTGGTCTGAGGTAACTATCTGGCCCAATGCCCCTGCTGTAACTCCAGCTGTGTTAGGATTTAGATCCCAGGCACCATCTGAGGCAAGCCCTCCTTCATATATTGTTCTGGCCTCCGCTGAAGAAAATGCCTGTTCTTTGCCTGTGGCAACAGCTTGCCGCCCTTCTAGGAACACTCGCTCATGCTCACAGCCTATCCCTGAGTGTCGTTTTGATTCTGACCCCTGCATCCAGACCATAGATGAGATTAGACGTCAAATCAGGATCAGGGAGGTAAATGGGATTAAGCCATTTGCTTGTCCTTGCAAAATGGAATGCTATATGGATTCTGAGGAATTTGAAAAACTTGTTAGCTTACTTAAGTCAACTACTGATCCTCTTATTCATAAAATAGCACGGATTGCAATGGGTGTCCATAATGTTCACCCATTTGCCCAAGAGTTTATTAACGAAGTAGGTGTAGTGACACTTATTGAAAGCTTGCTCAGTTTTCCTTCCCCTGAAATGAGAAAAAAGACTGTAATTACTCTGAATCCTCCTTCTGGGGATGAAAGACAACGCAAAATTGAATTACATGTTAAGCATATGTGTAAAGAAACCATGTCATTTCCTTTGAACTCACCGGGACAGCAATCTGGATTAAAGATACTAGGACAACTGACTACTGATTTTGTCCATCACTACATTGTTGCCAATTACTTTTCAGAGCTTTTCCATTTGCTGTCCTCAGGAAATTGCAAAACCAGAAATCTTGTTTTGAAACTACTTTTAAATATGTCTGAAAATCCAACTGCAGCCAGAGACATGATCAATATGAAGGCATTGGCAGCATTAAAACTCATCTTTAACCAGAAAGAGGCAAAAGCCAATCTTGTTAGTGGTGTGGCCATATTTATTAACATAAAGGAGCATATCAGAAAAGGCTCAATTGTAGTTGTTGATCACTTGAGTTATAATACACTCATGGCCATTTTCAGGGAAGTTAAAGAGATTATTGAAACAATGTAAAATGAGCCAGAGATAGAACATTTTAAGCCATCTTCAAACTCTAGCAGGCTGTACATTACAGTGTACACATTATACACTGCATCTTTAACACAGAGTCACCTGTGACAGGCTCTAGGTTTGAGCTAGACTATTTTGGGGGTATCAAATGAATATTATACCTTGGGCTGAAAATGTTTGATTTTTATCTTGTCTAGATTGGCATATTTTTAACATTTTACTTAAGATAGCAAACCAGTTCGTTTTAAGTAAGCTAACTTGTTCATTAGTATCTGTGGCTTAAAATGGCAAAAAAGAAAATATCCTTGAGTTTGTAATCTAGTTACAGAAGTAAGGCATACACACACACAAAGATAACAGTACCTAGAGAGAGAgtgtgtgtgagtgtgcgtgtctctgtgtgtgCACGTGCACGCTCATGGCCAAATGTGCGCACTCTACATAAAGGAGGCAGGAGTTCCTATAGGCTATTTAATGTAAGAGAAACTATTTTTCTCCTGTTCCAGCTGTATCAGATACTCGTTCCGCAACACAGAAATGACTCAGAATCTCAGACAAAATGTATTATTTGTTCAATTTTAATTTTGCTACTACATTCATAACTCTTAAATTGTTAGGCTGTTTCATTTACATCAAAGTTATCTCACAAAAGAGAAGGCAGGAAACGTTTTGtgagtgcctattctatgtcaaacactgtgttggcaccatattttacaagtttttttcctcttctcacagtgatcttgtgagttagttacttatatttttattagaactcattattctgggtaccctccaatgagaattagagaggttaaataccttttcctagattcccacagcaggaaggtggcatagctgttttgtctgacaccagaacccatctcaccacactgctttacagtcttcctGAAGGACATTTTGAGGTGGGGGGGCCTTCAAAGCTCAGAGACTGGTTTGAATGGTTTAATTTTGCAATGGATCATGTCCATGCCAGGTGTTACAATTCTTAACTTCCTCCAAATTCGTGtgtccattagacatttggctacatctggctggaggtcaggagaaaattctgaggtaaatagatggatttTATCTGGCAGTGTCGAAAATAGTAGGAGCCTAAAACTTTGTTCAATGAGTAAGATGTAGATTTGGAGTCATCAGCAGGGGAAACTTGTTAGATGTCCTTTGTATCTTTTTCTATCCATTTGTATTTTTTCTTTCCCAAAGAGCTGAAATCATTTTATACCCTGAATTTAAAAGGTAATTGCTTTTTTCCTCCTTGCGAAATCATACCTTAAttttttttttttttttttttACCATTTATGATTTATTCTCCTATGTGTCATATGAAAGGCCAAGGGGCTTTATCTTTTACTAGTAGGCAAGCCTGGGCATTTCTGCATTTGTGCCAGCTAACACTACAAAATAGACTTAATTAGAGAAATTTAGACCCAGAATTGCAGCTTCAACAACACAAAACAGGAAAGCTAGAAGAGGTTGCTGTGTCAACCTACAAGATAGTGATTCTTGGAAGTTGGTATGGACCAGAAAGCATTCCCAGGACATTTAGGCTATGGCTGAGTTCTCTAAGACTCAGGGTGGGAATTATAATCCCTGGTCTAAGCTGATATGAAAGtttctatgtgtgaaaatatggagttatatgctttgagattttctgccagttaaactaaaacaagatcatactgtaaatgtttgtaacttgcttccccccactgtatactgtaaacatctttgcatgtcaataaatatgcctctacaacatatttttgaatcacttaatattTTTCCCATGTTAACAGTTGGTATATAGTGTTGTAAACCTTTATTGCATATTCTCATAACATACAATATACACATTCTTTTGCAAAAATGGGAACACAGTATTGAGACTTGCCTTTTCCTCTTAACACTTATCTTTTCAATTTAGTATTATATAGATCTGTCACATGCTTTTTATCTAATaactttatagaaatataattgccatacattaagctgcatgttgaaagtatacagtgtgatcagttttggaatgtatatacacacaaaaccataaccacaatcaaaattgtaaatacattcatcacccaccaaagctactttttttttgagacagagtcttgctctgtcacccaggctggagtacagtggcgcaatctcggcccactgcaacctctgcttcccaggttcaagtgattctcgtgccttagcctcctgagcagctgggactacaggtgcatgccaccacatccgactaatttttttttttattttttgtatttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctggtctcaagtgatctacccatcttggtctccctgagtgccaggattacaggcgtgagccaccatgcccagcctcccccaaagcttcttaatgcccttttgtaatccctccctcccctctctccctgtgcccctaacccaggcaaccatgggacattttctgacaaaatagaattgttttcatttcctgtaattgtgtataaatggactcatatagcatgtactctttggtcgggaggggatctggcttatttcacttagtgtaattatttgagattcatccatatcatgtgtctcactatttcattgctttttattgccaagtagtattccaccatatggctttaccacagtttatttatccattcacttattgatggacatttgggctgttcagagtttggccattataagtaaagcagctatgagcatttgtgtacaagtgtttttatggacataggctttcatatctttggaatgacatctaacaatattgaatcttcgacccatgaataaaatctctctccactta

Publications

PMID - Link Title
No publications available for this retrocopy