Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SLC20A1P3
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr15:19967260-19968209  UCSC
Coordinates (T2T) chr15:17871386-17872335  UCSC
Coordinates (hg19) chr15:20172513-20173462  UCSC
Strand -
Parental Sequence NM_005415.5
Parental seq. overlap 780 bp
Parental seq. overlap (%) 23.6%
Genomic Region Intergenic
Retrocopy Summary SLC20A1P3, located on chr15:19967260-19968209, is a retrocopy of the parental gene SLC20A1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SLC20A1
Full Name solute carrier family 20 member 1
Also known as GLVR1|Glvr-1|PIT1|PiT-1
Coordinate chr2:112645938-112663825
Strand +
Gene summary The protein encoded by this gene is a sodium-phosphate symporter that absorbs phosphate from interstitial fluid for use in cellular functions such as metabolism, signal transduction, and nucleic acid and lipid synthesis. The encoded protein is also a retroviral receptor, causing human cells to be susceptible to infection by gibbon ape leukemia virus, simian sarcoma-associated virus, feline leukemia virus subgroup B, and 10A1 murine leukemia virus.[provided by RefSeq, Mar 2011]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SLC20A1P2
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SLC20A1P3
GGTGGCAAACACTTACGGTGCAATAATAGCTGTTTTTCCTATATCATGACAATATGTGGCACACTTCTAGACTCATTTCATGCCAAAGAAGTTCCTCAGAAGGGTAAGGAAATGGAGAATCTTACATGGTCCAATGCAGTCCCCAAGAAGTAATTTTGAATGGACAGTTACACTGGTTACTACAATGCTGTCTCTGACCTTCTCAGGATCGAAGATAATCATGAGTATCAAGGTGGAGATGGGTCTAGGCGAGAGAAAAGGAAGTAGTGGTTCTTGAGAAGAATTGTATGGCCAAGATAAGCTTGAACTATCTCTCCTCTTCCAGTTCCTGCAACTTCTTATTGCCTGATTGAGGTCATTACCCTATGGTGGTAATGACATCAGCAATGTAATAAATTCTCTCGTGGCTTTGTATCTGGTTTATAACATGGGAAATGTTTCCTCAAGAGTGGTGATGCCAGTATGGCTTCTGCTCTCTGGTGGTGTTGGAATCTGCATTAGTCTGTGGGTTTGGAGGAGAGTGATTCAGGCCATGGGGAAGAATCTGACACTGTAACACCCTCTCGTGCCTTCGGTACTGGACTGGCTCCTGCCCCCTCACTATGGTGATTGCATCAAATATCGGCCTCCCCATCAGTACAACACGTTGTAACATGGGCTCCTTTGTACCTGGCTTTAATCCAAGAAAGTTGTTGACTTGACTCTTTCGTGATATTGTATAGCCTGGTTTGTCACAGTCTTTATTTCTGGAATTGTCAGTGCTGCCATCTTGGCTGTCTTCAAGTATGTCATCCTCACAGTGTGAAGCTGTTTGACATTAACATTTTTGTCAATGTTTGGGACTACCTTACATATTCCGGCCCTCTCAAAGAATGATTACAGTGTTAGGGAAGGCTGACACGAGTCTACTTAAATTTGGGAGCCAGAGAAGGAAAGTGTTATTGTGCTAC
>NM_005415.5
GGAGTGATGGCTGCCGGCGCTCTCTGCGTGGTTCTTCTTCTCGGCCGCTGAAACCCCCGCGGCTGCTTCCTGGGAAGGTCGTGAGTCCCGCTGAGCTGTCCCCGGTGCCGCCGACCCGGGCCGTGTGCCCGTGGCTCCAGCCGCTGTCGCCTCGATCTCCTCGTCTCCCGCTCCGCCCTCCCTTTTCCCTGGATGAACTTGCGTCCTTTCTCTTCTCCGCCATGGAATTCTGCTCCGTGCTTTTAGCCCTCCTGAGCCAAAGAAACCCCAGACAACAGATGCCCATACGCAGCGTATAGCAGTAACTCCCCAGCTCGGTTTCTGTGCCGTAGTTTACAGTatttaattttatataatatatattatttattataGCATTTTTGATACCTCATATTCTGTTTACACATCTTGAAAGGCGCTCAGTAGTTCTCTTACTAAACAACCACTACTCCAGAGAATGGCAACGCTGATTACCAGTACTACAGCTGCTACCGCCGCTTCTGGTCCTTTGGTGGACTACCTATGGATGCTCATCCTGGGCTTCATTATTGCATTTGTCTTGGCATTCTCCGTGGGAGCCAATGATGTAGCAAATTCTTTTGGTACAGCTGTGGGCTCAGGTGTAGTGACCCTGAAGCAAGCCTGCATCCTAGCTAGCATCTTTGAAACAGTGGGCTCTGTCTTACTGGGGGCCAAAGTGAGCGAAACCATCCGGAAGGGCTTGATTGACGTGGAGATGTACAACTCGACTCAAGGGCTGCTGATGGCCGGCTCAGTCAGTGCTATGTTTGGTTCTGCTGTGTGGCAACTCGTGGCTTCGTTTTTGAAGCTCCCTATTTCTGGAACCCATTGTATTGTTGGTGCAACTATTGGTTTCTCCCTCGTGGCAAAGGGGCAGGAGGGTGTCAAGTGGTCTGAACTGATAAAAATTGTGATGTCTTGGTTCGTGTCCCCACTGCTTTCTGGAATTATGTCTGGAATTTTATTCTTCCTGGTTCGTGCATTCATCCTCCATAAGGCAGATCCAGTTCCTAATGGTTTGCGAGCTTTGCCAGTTTTCTATGCCTGCACAGTTGGAATAAACCTCTTTTCCATCATGTATACTGGAGCACCGTTGCTGGGCTTTGACAAACTTCCTCTGTGGGGTACCATCCTCATCTCGGTGGGATGTGCAGTTTTCTGTGCCCTTATCGTCTGGTTCTTTGTATGTCCCAGGATGAAGAGAAAAATTGAACGAGAAATAAAGTGTAGTCCTTCTGAAAGCCCCTTAATGGAAAAAAAGAATAGCTTGAAAGAAGACCATGAAGAAACAAAGTTGTCTGTTGGTGATATTGAAAACAAGCATCCTGTTTCTGAGGTAGGGCCTGCCACTGTGCCCCTCCAGGCTGTGGTGGAGGAGAGAACAGTCTCATTCAAACTTGGAGATTTGGAGGAAGCTCCAGAGAGAGAGAGGCTTCCCAGCGTGGACTTGAAAGAGGAAACCAGCATAGATAGCACCGTGAATGGTGCAGTGCAGTTGCCTAATGGGAACCTTGTCCAGTTCAGTCAAGCCGTCAGCAACCAAATAAACTCCAGTGGCCACTACCAGTATCACACCGTGCATAAGGATTCCGGCCTGTACAAAGAGCTACTCCATAAATTACATCTTGCCAAGGTGGGAGATTGCATGGGAGACTCCGGTGACAAACCCTTAAGGCGCAATAATAGCTATACTTCCTATACCATGGCAATATGTGGCATGCCTCTGGATTCATTCCGTGCCAAAGAAGGTGAACAGAAGGGCGAAGAAATGGAGAAGCTGACATGGCCTAATGCAGACTCCAAGAAGCGAATTCGAATGGACAGTTACACCAGTTACTGCAATGCTGTGTCTGACCTTCACTCAGCATCTGAGATAGACATGAGTGTCAAGGCAGAGATGGGTCTAGGTGACAGAAAAGGAAGTAATGGCTCTCTAGAAGAATGGTATGACCAGGATAAGCCTGAAGTCTCTCTCCTCTTCCAGTTCCTGCAGATCCTTACAGCCTGCTTTGGGTCATTCGCCCATGGTGGCAATGACGTAAGCAATGCCATTGGGCCTCTGGTTGCTTTATATTTGGTTTATGACACAGGAGATGTTTCTTCAAAAGTGGCAACACCAATATGGCTTCTACTCTATGGTGGTGTTGGTATCTGTGTTGGTCTGTGGGTTTGGGGAAGAAGAGTTATCCAGACCATGGGGAAGGATCTGACACCGATCACACCCTCTAGTGGCTTCAGTATTGAACTGGCATCTGCCCTCACTGTGGTGATTGCATCAAATATTGGCCTTCCCATCAGTACAACACATTGTAAAGTGGGCTCTGTTGTGTCTGTTGGCTGGCTCCGGTCCAAGAAGGCTGTTGACTGGCGTCTCTTTCGTAACATTTTTATGGCCTGGTTTGTCACAGTCCCCATTTCTGGAGTTATCAGTGCTGCCATCATGGCAATCTTCAGATATGTCATCCTCAGAATGTGAAGCTGTTTGAGATTAAAATTTGTGTCAATGTTTGGGACCATCTTAGGTATTCCTGCTCCCCTGAAGAATGATTACAGTGTTAACAGAAGACTGACAAGAGTCTTTTTATTTGGGAGCCAGAGGAGGGAAGTGTTACTTGTGCTATAACTGCTTTTGTGCTAAATATGAATTGTCTCAAAATTAGCTGTGTAAAATAGCCCGGGTTCCACTGGCTCCTGCTGAGGTCCCCTTTCCTTCTGGGCTGTGAATTCCTGTACATATTTCTCTACTTTTTGTATCAGGCTTCAATTCCATTATGTTTTAATGTTGTCTCTGAAGATGACTTGTGATTTTTTTTTCTTTTTTTTAAACCATGAAGAGCCGTTTGACAGAGCATGCTCTGCGTTGTTGGTTTCACCAGCTTCTGCCCTCACATGCACAGGGATTTAACAACAAAAATATAACTACAACTTCCCTTGTAGTCTCTTATATAAGTAGAGTCCTTGGTACTCTGCCCTCCTGTCAGTAGTGGCAGGATCTATTGGCATATTCGGGAGCTTCTTAGAGGGATGAGGTTCTTTGAACACAGTGAAAATTTAAATTAGTAACTTTTTTGCAAGCAGTTTATTGACTGTTATTGCTAAGAAGAAGTAAGAAAGAAAAAGCCTGTTGGCAATCTTGGTTATTTCTTTAAGATTTCTGGCAGTGTGGGATGGATGAATGAAGTGGAATGTGAACTTTGGGCAAGTTAAGTGGGACAGCCTTCCATGTTCATTTGTCTACCTCTTAACTGAATAAAAAAGCCTACAGTTTTTAGAAAA

Publications

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