Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name TRA2AP1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:52161044-52163481  UCSC
Coordinates (T2T) chr1:52042554-52044991  UCSC
Coordinates (hg19) chr1:52626716-52629153  UCSC
Strand -
Parental Sequence NM_001362761.2
Parental seq. overlap 1297 bp
Parental seq. overlap (%) 45.9%
Genomic Region Intragenic (ZFYVE9)
Retrocopy Summary TRA2AP1, located on chr1:52161044-52163481, is a retrocopy of the parental gene TRA2A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TRA2A
Full Name transformer 2 alpha homolog
Also known as AWMS1|HSU53209
Coordinate chr7:23504780-23531981
Strand -
Gene summary This gene is a member of the transformer 2 homolog family and encodes a protein with several RRM (RNA recognition motif) domains. This phosphorylated nuclear protein binds to specific RNA sequences and plays a role in the regulation of pre-mRNA splicing. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Sep 2013]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes TRA2AP1
Bonobo Pan paniscus TRA2AP1
Gorilla Gorilla gorilla TRA2AP1
Orangutan Pongo abelii TRA2AP1
Gibbon Nomascus leucogenys TRA2AP1
Green monkey Chlorocebus sabaeus TRA2AP1
Crab-eating macaque Macaca fascicularis TRA2AP1
Rhesus Macaca mulatta TRA2AP1
Baboon Papio anubis TRA2AP1
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TRA2AP1
TACATCTGTCAAAACTTAAAAACTAAAGTGTGATTTCTTTGTTAAATTTATTGAAGTTTAAGTATTCCCTTAATCAGTGAAGGACAACCCTTATTTATTACCTAGAGCAACTATATAATTTGCTGTTAGAAATTTTGGTATTGGAACTATGGATAAGCAGGTTATCATATAGTATAGAATCCTTAGAAGATACATGTGGGGAAAAGTAGTCTCCTTTCAAATAAAAGTTAATTTATTTGAAAAAAATTCTGGATGTCCCTAAGCTTCTGATTCTTCCTAGTCTTTAAGAAAAAAAAATTTTTGGTTTATTTAGTATCTACATTATACTCCTAAAGATGTAATTGTTGTCATTTTGAGTAAACATCTTGAGTATAAAAGCAACCCTAGTGTTATACTCCGTAAACTTTTTTTTTTTTTGCTTTTACTAACATAAACTCCTAGCTAATCAAATAAGAAATTACCTTTTTAAAGCTTCTTTTGTGTTAGATATTGTATTAGAGATCTGCATTTATGAAGAACTCCTTTTTAAACTTTCTTTTGAGGAAGACAGTAACACATAAATTAGTTCAGTCATGTCATGTTTGGGGTGGCATGGAACAGTCAAGTAGTTAGGTGCAGAAAGTTTGAAGCTATAAAAGAAAATACTTGGACATTTCTTTTGAAGAATGGAATTTTTGAGCCCTAAAAATTAAGTCATTTTTTAGAGATAAAAAGCTTGCAGACTCCTATGAAAGATGTATTTAAAATACATCTCTTAAAACTTTCACAGACGTCGAGATTCTTACTATGATAGAGGATATCATCGTGGATATGACAGATATGAAGACTATGATTACCGGTACAGAAGATGATCACCTTCTCCTTATTATAGTCGATACAGATCACAATCAAGATCTCATTCCTGCAGCCCAAGACACTATTGATAATGAAATGGTTGCAATGAAGGACAAATCTGGAAGAATAAATGGGTCCTAAGTAAATGAGTCTTCACTCTCAGTCAAAATCTCCAACAGGAACTCCTGCTTGTGTAAAATTGGAGAGATGGTCAGGATCTCGTAGTCCTTCAAGGGTTTTCAAACACTCTGAATCCCATTCTCGATCAAGATCAAAATGTCAAGGAGGCATTCTCATCGACGTTACACACTTGATCCAGATCCCACTCTTGATCCAGATACCACTCTCACAGGAGACGAAGTAGCTCATATACACCAGAATACTGGCAGTGAAGGAGCCGAAGTCATTCTCCAATGTCTAACCAGAGAAGACACACTGGCAGAAGGGCAAATCCAGATCCCAACACTTGCCTTAGAGTGTTTGGCCTTAGTTTGTACACAACAGACAGAGATCTTCGTGAAGTATGTTCTTGATATGGACCTTTGAATGGTGCCAATGTGGTTTACAACCAGCAAACTGGGCGATCTCAAGGATTTGCTTTTGTGCATTTTTAGGGAATAGATGACTCAAAGGAGGCTATGGTAAGGGCAAACAGAAAGGAGCTGGATGATAGAAGAAATTCGGGTGGATTATTCTATTACCAAGACAATGCGCACACCTATACCAGGCATCTATATGGGCAGAACTCATAATTTTGCTGGAGCCTGCAACCAAGTGGGAGTGGAGTGGAGCGGCCTTTGTTGCCAACTCTTTCCTCTCTCCCACAGTTTGGTCAGCAGGTTGATTAGGCCATTGGCCCTCGAGCCAAGACTTGTCTCATATTTAGTTCTGGGGAGCACCTCATAGACATGAGTGATGTAGAGGAGAACAACTTCAAGGGCATAGTTAATGTTCATGAAGAAACTGAAGAGTTTTTTCCAAAAATGTTGAAGATAAATCAAGGTAAAAGAAGGCTAATGGAAAGTATTAAGGATCAGAAAGTTAAAATTGAATGGGGGAAAAAACTGAACAGAAGATTGGTCGGATAGAAGCACTTGAATTTTTTTAAGGCTATTTTGAATTGTTTGAATTGGGGAAGAATACGCAAAGTACAAAAAGTGAAAAACTCAAGAATg
>NM_001362761.2
ATTTTGCTGGAGCCTGCGACCGAGTGGGAGTGGAGTGGAGCGGCTGTGGTTGCCGACTCTTTCCTCTTCCCCACGGTCCAGTCAGCGGGTTAATTAGGCCATCGGCCCTCGAGCCGAGACTTGTCTCTTATTTAGTTCTGGGGAGCGCCTCGTCGACATGAGTGATGTGGAGGAAAACAACTTCGAGGGCAGAGTTAATGTTCGTGAAGAAATTGAAGAGTTTTTTCCAAGAATGTGGAAGATAAATCAAGATAAAAGAAGGCTAATGAAAAGTATTAAAGATCAGAAAATTAAAATTGAATGGGGGAAAAAATTGAACAGAAGATTGGTCAGATAGAAGCACTTGAATATTTTTTTAAGGCTATTTTGAATTGTTTGAATTGGGGAAGAATACACgaagtatgaaaaatgaaaaactcaatgaagaatgaagagaagtagaaagcaagagtgaagtagaattaaaagaatctggaagaatgaaTGGGTCCTAGGTTAAGTAAATGTATGGTTTATGTTCCAGTGTCTGTATGATCAAGTTGTAGATGAATTTGCATGATTACTTAGTTAATAGAGAATTGGTGATCTGGTTCAAGTAGGGAATTATTGAGGACAGTTAGCAGTATTAACAGTGGGTTATTATTGAGCTGAAATTTTTTCTGGAGGGTGTTGTCTAACCATTTGTTTTTCAGGAGCAATCAATATAAATAATTACGGTACTTTAAATGTTAGGTGTTAGGCATCTACATGACCAGTGCCATTTGTAATACTGTCTTCTTTGTTAGGAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCGTGTAAAATCGGAGAGCAGGTCAGGATCTCGTAGTCCATCAAGGGTTTCCAAACACTCTGAATCCCATTCTCGATCAAGATCAAAATCCAGGTCGAGGTCAAGGAGACATTCTCATAGACGTTACACTCGATCCAGATCCCACTCTCACTCTCATAGGAGACGATCTCGAAGTAGATCATATACACCAGAATACCGGCGGCGAAGGAGCCGAAGCCATTCTCCAATGTCTAACCGGAGAAGACATACTGGCAGCAGGGCAAATCCAGATCCCAACACTTGCCTTGGAGTGTTTGGCCTCAGTTTGTACACAACAGAGAGGGATCTTCGTGAAGTATTTTCTCGATATGGACCATTGAGTGGTGTCAATGTGGTTTATGATCAGCGAACTGGGCGATCTCGAGGATTTGCTTTTGTGTATTTTGAGAGAATAGATGACTCAAAGGAGGCTATGGAAAGGGCAAATGGAATGGAGCTGGATGGTAGAAGAATTCGGGTGGATTATTCTATAACCAAGAGAGCGCACACACCAACACCAGGCATCTACATGGGCAGACCAACTCAtagtggtgggggtggtggaggaggcggcggcggtggaggtggaggtggtggcagacgtcgagATTCTTACTATGATAGAGGATATGATCGTGGGTATGACAGATATGAAGACTATGATTACCGATACAGAAGACGATCACCTTCTCCTTATTATAGTCGATATAGATCACGATCAAGATCTCGTTCCTACAGCCCAAGACGCTATTGATAACGGAATGGTTGCAATTAAGGACAttttttttcctcttttttttttttttttttttAATTCTGAGATTTCCCCAAGCTGTGGATTCTTCCTACTCCTTAAGAAAAAAACTTTGGTTTATTTAGCATCTACACTTTTGTCAGTTGTGTTGCTGTTTTCCACCCATTTTATTATACTCTTAAAAGATGTAATTGTTGTCATTTTGAACAGTTAAACATCTTGAGTATAAAAAGAACCCCAATGTTATGTTATGCTTTGTAAATTTTTTTTTTTGCTTTTACCTAGATAAACTTCTAGCTAATCAAATAAGGAAAGAAACTGTCTTTTTAAAGCTTCTTTTGTGTTAGATACTGTATTAGAGATCTGCATTTATCATGAGTTCCTTTTTTTTTTTAACTTTATTTTTGGGAAAGTAACACATGAAGTAGTTCAGTCATGTCAGGTTTGTCTGGGGTGGAATGGAACAGTCAGGTAGTTGAAAGTTTTTTTTTAGAGATGAAAAGCTTGTGAACTCCTGTAAAACATGCTGTATTTGAAATACATCTGTTAAAACTTAAAAACTAAAGTGTGATTTTTTTTGTTGTTGTTAAGTTTATTGAAGTTTATTCCCTTAATCAGTGAAGGACAACCCTTATTTATTACCTAGAGCAGTTGTATAATTCGCTGTTAGAAATTTTGGTATTGGGACAGTGGATAAGCAGGTTATCACATAGCATAGAATTCTTAAAAGATACATGTGGGGAAAAGTAGTCTCAAATAAAAGCTAATTTCTTTGAAAA

Publications

PMID - Link Title