Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TPST2P1
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Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr22). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr15:36626168-36627545  UCSC
Coordinates (T2T) chr15:34431670-34433049  UCSC
Coordinates (hg19) chr15:36918369-36919746  UCSC
Strand -
Parental Sequence NM_001362923.2
Parental seq. overlap 1139 bp
Parental seq. overlap (%) 19.6%
Genomic Region Intragenic (CDIN1)
Retrocopy Summary TPST2P1, located on chr15:36626168-36627545, is a retrocopy of the parental gene TPST2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TPST2
Full Name tyrosylprotein sulfotransferase 2
Also known as TANGO13B|TPST-2
Coordinate chr22:26521996-26590132
Strand -
Gene summary The protein encoded by this gene catalyzes the O-sulfation of tyrosine residues within acidic regions of proteins. The encoded protein is a type II integral membrane protein found in the Golgi body. Alternative splicing produces multiple transcript variants encoding distinct isoforms. [provided by RefSeq, May 2018]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes TPST2P1
Bonobo Pan paniscus TPST2P1
Gorilla Gorilla gorilla TPST2P1
Orangutan Pongo abelii TPST2P1
Gibbon Nomascus leucogenys TPST2P1
Green monkey Chlorocebus sabaeus TPST2P1
Crab-eating macaque Macaca fascicularis TPST2P1
Rhesus Macaca mulatta TPST2P1
Baboon Papio anubis TPST2P1
Marmoset Callithrix jacchus TPST2P1
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse - (ARCHS4)

Related Sequence

>TPST2P1
AGGAGACGCACATCATCCCTTGTGTGCTGGCCATGCACCAGGCCTGGTCCAAGTCTGGCCACAAGAAACTACAGCTGGACAAGGCGGGCGTGACTGACGAGGTGCTGGACATTGCCATGCAGGCCTTCATCCTGGAGGTGATCTCTAAGCAAAGGGAGCCAGCCCATGTGCTCTCCAACAAGGACCACTTCAGACTCAAGTCCTTGAATCACTGGTCTACCTGTCACACCTGTTCTCCAGCTCCAAGTTCCTGCTTATGGCTCAGGACAGCCATGTCTCCATGCACTCCTTGATCACATGCAAGGTCACTATTGCAAGGTCACTACCCAGGCTTCGACCTCAGCAGCTATGGCAACTGCCTCACCAAGTGGAACAAGGCCATAGAGGTGATGTACACCCAGTGCATGGAGGTGGGCAAGGACAAGTGCCTGCTCGTGTACTACAAGGAACTGGTGCTGTAGCCTAGGAGCTTCCTCAGACTCATCCCAGACCATCTCGGCATCACCTGGAGCAACACTGTCCTCCACCATCAAGACCTCACTGGCAAGTGGAATGGCATCTCCCTGTCTAAGATCCAGTGGTCCATGGATGAGGTCATCAAGCCTGTGAACCTGGAAGTGCTCTCCAAGTGGACTCACCACATCCCTGGGGACATGGTGCCAGACATGGCCCAGATTGTCCCATGCTGGCTCAGCTTAGCCATGACCCCTATGCAAATACCCTCCCCAACCCCCACTTCCACTATAGCAACCCTGACCCCCATCATCATCAGTAACGCACACCAAGTAAGGGACTATAAAACACCAGTCAATCTGAAAGGATATTTTCAGGTGAACCAGAATAGCACCTCCTCCCACTTAGGAAGCTCATGATTTCCAGATCTCTGCAAATGGCTTTGTTGCCCAAAAGAGAAGAAACTGCATTTAAGTGGAAGTTGGACCCCTTATCCAAGCATATTGCTTGCTATTAGTCGCCAAAACAGGATGGCTAATGAGGAATATATTTGCATATGTTTGCAAAACTGAATCATTGAAAACATACCTTGAAACTCTATCTTTGGATACCCTACGGTGGAAAGCAATGATTGTGGAACTCGTCTGGCTTTTGAAACTTAGGTATTTTATATTTTTCCCCTCGAGAACTATTTTTTTTTTTTTTAAGAAATGGATTTGCCATCCTCCTTAATTTGCAGGACTCCCTTTGTGGCTTTGTTTGCTGGAACAAGGCCCACAGACTGTGCTTCTCTTACAGATCCTTACTTTGAATTTTAAGAATCTACTTAAGAATTTAATATATAAGGCCTTCCCTGATTCCCCATCAGTTCTAGCTAGTTTTGAAGAGAAAAAAAAAATGATTTGAATAAAATGAACAGGGGCTT
>NM_001362923.2
cctcccccttccccggcTGGGGCGGCTGGAGAGCCGGGAGTCGCTGGGTGCGTGGGGCTGCCTCGCCGCGTCTCGCCACGTGTGGTTTCTATTTGTTGGCGATTTTGCTGTGTGGTAGAGTCGTGCTCACCCTGCACCCACGTGGGCCtttcttagcttaaaatggagaacatgccaccacctgcctgactgggctgatGGCTCTGCCAGCAGACAGCCTTGGCACACAGGCACAAGGGCTGGAGCCCAGAGATGAGAGTGCCCAAGGGAGATGTGAGCCTGGCGGGCTGCCCGCTAACCTGTCGCTGAAGCCCCAGAAGCGGGCCCTCAGGCCAGGCCTACCCTGCCTCCGGCCCAGCATGCGCCTGTCGGTGCGGAGGGTgctgctggcagccggctgcgccctggtcctggtgctggcGGTTCAGCTGGGACAGCAGGTGCTAGAGTGCCGGGCGGTGCTGGCGGGCCTGCGGAGCCCCCGGGGGGCCATGCGGCCTGAGCAGGAGGAGCTGGTGATGGTGGGCACCAACCACGTGGAATACCGCTATGGCAAGGCCATGCCGCTCATCTTCGTGGGTGGCGTGCCTCGCAGTGGCACCACGTTGATGCGCGCCATGCTGGACGCGCACCCCGAGGTGCGCTGCGGCGAGGAGACCCGCATCATCCCGCGCGTGCTGGCCATGCGCCAGGCCTGGTCCAAGTCTGGCCGTGAGAAGCTGCGGCTGGATGAGGCGGGGGTGACGGATGAGGTGCTGGACGCCGCCATGCAGGCCTTCATCCTGGAGGTGATTGCCAAGCACGGAGAGCCGGCCCGCGTGCTCTGCAACAAGGACCCATTTACGCTCAAGTCCTCGGTCTACCTGTCGCGCCTGTTCCCCAACTCCAAGTTCCTGCTGATGGTGCGGGACGGCCGGGCCTCCGTGCACTCCATGATCACGCGCAAAGTCACCATTGCGGGCTTTGACCTCAGCAGCTACCGTGACTGCCTCACCAAGTGGAACAAGGCCATCGAGGTGATGTACGCCCAGTGCATGGAGGTAGGCAAGGAGAAGTGCCTGCCTGTGTACTACGAGCAGCTGGTGCTGCACCCCAGGCGCTCACTCAAGCTCATCCTCGACTTCCTCGGCATCGCCTGGAGCGACGCTGTCCTCCACCATGAAGACCTCATTGGCAAGCCCGGTGGTGTCTCCCTGTCCAAGATCGAGCGGTCCACGGACCAGGTCATCAAGCCTGTTAACCTGGAAGCGCTCTCCAAGTGGACTGGCCACATCCCTGGGGATGTGGTGCGGGACATGGCCCAGATCGCCCCCATGCTGGCTCAGCTCGGCTATGACCCTTATGCAAACCCCCCCAACTATGGCAACCCTGACCCCTTCGTCATCAACAACACACAGCGGGTCTTGAAAGGGGACTATAAAACACCAGCCAATCTGAAAGGATATTTTCAGGTGAACCAGAACAGCACCTCCTCCCACTTAGGAAGCTCGTGATTTCCAGATCTCCGCAAATGACTTCATTGCCAAGAAGAGAAGAAAATGCATTTAAGTGGAAATCGGACCTCTAATCCAAGCATATTGCTTGCTATTAATCGCCAAAACAGGACTGCTGATGAGGAATGTATTTGCATATGTTTGCAAAAGCTGAATCATTGAAAACGTACCTTGAAACTCTCTATCTCTGGACACTCCAGGGTAGAGAATGAAGGGTATGGAAGTAGTCCGGCTTTTGAAACTTAGGTATTTTATATTTTTCCCCTCAAGAACTTTTTTTTAAGAGACAGATTTGCCATCCTCCTTAATTTGCAGGACTGCCTTGGTGGCTTTGTTTGCTGGGACAAGGCCCACAACCTGTGCCTCTCCTATTGACCCTTACTTTGAATTCAAAGAATCTATTTAAGAGTTTAATATATGAGGCTTTCTTTGATTCCTCCTCAGTTCTACCTAGTTTCACAGAGGAAAAAAATACTCTTTGAATAAAGTGAACAGAGGCTCATTTGTTTGTGCCTTACTTTACTGAATGAATAGGGTTTTTTTTTTCTTTCCATACTGGATTTTGTCAGGTAGATTTGTGATGAGCAAAAAGCTGGAGAATATAGGTGCATGTAAGGCACAGCTGAATTCCtgtgtcagggtccccagggccacccccaggatcgatgattggctagaagaactcagaattcagaagagctattatccttatggttatggtttattacagcaaaaggataaacattaaaatcagcaaaagaggccgggtggagtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcagatcgcctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattacctgggcgtggtggtgtgcacctgtaatcccagctactcaggaggcttgaacctgggaggcggaggttgcagtgagcggagatcgtgccattatactccagcctgggtgacagagcaagactccatctcaaaataaaatcaacaaaagaaaaaggtgcatagggcagagtccgggagagaccggcctcaagcttccagttgtcatctcctggtagagtcttacagacacacttaattttcccagcaatgatatgtgacaacacgtactaaatattaccagccagaaagctcaccctagccttggggtctaggtttttattgcatgtcagtcacatagggcaatcacatgaccgactttagttacttaatcaccagctgctccagaggtcaaaatgatacagcatggcccaaggtccccaccataaatcacattattagcacaaactatctggcctggtatggcccaaggcctgaggtatacaaagacacccctacttgggaggatattccaaggacttagaggttatctcccaggagcccattaaggccagttttttctttgagatgtgctgggtttggacacttcaagcctgctgagttaacccttatagcacaGTCCCCAAATGCTGAGGGACCAACTGGGCCTACAATAAGTTTGTATCTTTAAGGGTTAAGGTGTTTTACCCATACCTCCTTGCCTTATATCTCATGATAATATGAGGCTTTTGGAAGGCAGTGACTTATTGTGGCTTGGGGCATGGGTTTTTGGAGTCAGGCTGACCTACTGGCTGTATGGCTtgagactttgtctcttcatctgtaaaatggggaagttaaaacttCATGgtgtgtatgtgtgtatgtgtgtgtttagacagaatctcgctctgtcactcaggctagagtacagtggcgtgatcatagctcactgcagcctcggtctcctagggtcaggtgatcctcccatcttagcctcctgagtagctgggcatgtgccaccacacctggctactttttaaatttttttttttctgtagagacgaggtctttctatgctgttcaggctgAACTTCATGGGTTTATTGGGGATGGCTAATGGATGACATTGGCGGTGGTCCTTGATACCAGATAAGCCCTCAGTGTGAAGCAGCTCTTATTTTTCCTTGTCTTGAGATTGCTCTGGAATGGAAATTAGGCTTTTTTGAAGGTGTGACCCTTTTTGTTCATTTCTTCAGCAGTTACTTTTTATTTTTTAAATGTTTGACACACAGTCTCTGATAAATGATCATTCACCAATCACCGATTACTCTCCTTGCTCTGTTAAGTGTGACACTGTCCCTTTGAGAATCTGGCGACAGCTATGTATCCCATCACCACACACCCCAAAAAAAAAATTTATGTCTGGTTCCAGGAGTTACCTTTTATGAGAAGTCCATCTGTGAAGACCCTGGATGTTCAGAGAACTTCCTGGGAAAACACTGAAAGAAAATAAAGAggccgggcccggtggctcatgcttgtaatcccagcactttgggaggctgaggtgggcagataagctgaggtcaggagttccagaccagcctggccaacgtggcgaaaccccatctactaaaaatacaaaaattagctgggcgtcgtggcgcatgcctgtagttgcagctacttgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgaaccaagatcatgctagtacactccagcctgggcaacagagtgagactccatctcaaaaataaaataaataaaacaaaataaaaTAAATACAATTTCTGTTTCTAGCCCCTAAGTGGTAGCACTGGGTCTTGTTCCCTGAAAAAAACTAGGCTCAGAATCCACTCTCATTTCATCTCCCCTGATTTGATCTGAAAAGATTTTGTTTAGAGTACTACATGAATATATTATAAAACATGGGACAATCAGAATTGATAGTAAGAAGGCAAGTGGCTCTATTTGTACTTCCTCTCAATAGCTCCTAAAGGTAATGCTACCATTTTCTGTTTGTACATAGTCTTCCAGACTTTAAATTTTTGAACATATAAATATTATCATCTTAAAGACGTATGGAAAAAACCATTTTGAATAGGTTATTCCAAAATGTAATTTAACAGATTGCTCTGGAGGAttgtttgtttgtttgttttggagacagagtcccgcttggttgctcaggctgcagtgcagtggcacaaacacagctcactgcaacctctaactcctgCAAACACAGCTCACTGCAACCTCTAACTCCTGCAAACACAGCTCACTGCAACCTCTAACTCCTGCAAACACAGCTCACTGCAACCTCTAACTCCTgcaaacacagctcactgcaacctctaactcctgggctcaagcagtcctttcacctcagcctcctgagtagctggaccatgacacctacctaactttttattttttgtaaagaggggaatcactatgttgcccaggctggtctcaaactcctgggctcaagcaatccttcctcagcctctcaaagagttgggtttacaggcgtgagccaccgcacctggctcctggagcatttctgatgtgaacatgtgctgatctaacaccactccttttaccagctgcctgttctagagcaaaccatcttttttgagcattccactttggctaggcccttaggctgttagcagttttcatcgctactggcaaagctgcagtggacgttctcctgcacatataacctcttgatgccactgtatgagtgagtctctgcaaaatgagaagtagaattgctggggtgaaaggcatacatactaacttttTTGATTAATTCCACCCATGTACCCTGATTTGGGCAGAATTTTAATCTCACTGTGAAATCAGAGCTTTGTTCTAGAGCCTTTCTTGGGGGTTCCATGGATCAGTGGGTCAGCCGTCACTTGTGCCCTGGCCCATCCTCTGTCCAGCTTGGGCAGCATGCATCATTCATTCTGATTCCTTAATTTGCCATATGTGAAAACATGGTAATCTATACATTACTTGGGTGCTATTATTATATATAactagctttggagtcagaattagcgtctcatcctggctctaccactttccaactgtgcgactgtggccaagtgactccccttctctgagcctcagttttcctcttctgtaaaatgggggtaaagggataagaactatagggggatctcaggggatggttaagagaaatccatgagataagcaaacacattatctagtttagtaaagctaagcaatgaagacttaacagccccatggtgaaggcttaatacatggtagctataATGATTACTATTAATATTGTGAAATAAAAGGTTGTGATGAACCAA

Publications

PMID - Link Title
No publications available for this retrocopy