Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CTDSP2P1
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr15:38458548-38459830  UCSC
Coordinates (T2T) chr15:36263839-36265121  UCSC
Coordinates (hg19) chr15:38750749-38752031  UCSC
Strand -
Parental Sequence NM_005730.4
Parental seq. overlap 1057 bp
Parental seq. overlap (%) 22%
Genomic Region Intragenic (FAM98B)
Retrocopy Summary CTDSP2P1, located on chr15:38458548-38459830, is a retrocopy of the parental gene CTDSP2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CTDSP2
Full Name CTD small phosphatase 2
Also known as OS4|PSR2|SCP2
Coordinate chr12:57816702-57846729
Strand -
Gene summary Enables RNA polymerase II CTD heptapeptide repeat phosphatase activity. Involved in protein dephosphorylation. Predicted to be located in nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes CTDSP2P1
Bonobo Pan paniscus CTDSP2P1
Gorilla Gorilla gorilla CTDSP2P1
Orangutan Pongo abelii CTDSP2P1
Gibbon Nomascus leucogenys CTDSP2P2
Green monkey Chlorocebus sabaeus CTDSP2P1
Crab-eating macaque Macaca fascicularis CTDSP2P1
Rhesus Macaca mulatta CTDSP2P1
Baboon Papio anubis CTDSP2P1
Golden snub-nosed monkey Rhinopithecus roxellana CTDSP2P1
Marmoset Callithrix jacchus CTDSP2P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CTDSP2P1
TGGGCTCACTGGTTCTTCCACCCAACCAGCCCGCACCTGTGGAATTAGATGGAGCACAGTTCCATCATCACCCAGGCACAGGGGAAGATGCCCTGGTGCTCACCAAGCAAGGCCTGGTCTCCAAGCCCTCCTTAAGAAGCCTCGTGGATATAACATCTTCAAGGCCCTTGTCTGCTATTTTCGCATCCAGCATGGCCAGTCAAGCTCTTCCACTGAGCTCATCCATATAAGGAGGAAGCCAACACCACTGCTAAGTCGGATCTGCTCCAGTGTCTCCAGTACCAGTTTTATCGGATCCCAGGGACGTGTCTGCCCCAAGGTGACAGAGGAAGATCAAAGGAGGATCTGTGTGGTCACTGACCTGGATGAAGCCCTTGTGCATCTTTAAGCCCAGCAACAATGCTAGCTTCACAGTGCCTACAGAGATTGAGGAGACCACTCAAGCAGGTTTCTGTCCTCAAAAGAGCTCACGTGGAAAGAGACGAATGAGAGAACTCTTTGAATGTGTTCCCTTCACTGCCAACCTGGCCAAGTATGCCAACCCTGTGACGGATCTGCTGGCCGGTGTGGGGTGTTCCGGGCTCACCTATTCCATGAGTCCTGTGGTTCCACCAGGGCTGCTAAGTCAGGAACCTCAGCCGCCTGGGGAGGAACCTGAGGAAAACCCTCATCCTGGACAACTTGTCTGCTTCTTACATCTTCCACCCAGAGAATGCAGTGCCTGTGCAGTCCTGGTTTGATGACATGGCAGATACTGAGTTGCTGAACCTGTTCCCAGTCTTTGAGAAGCAGAGCAGAGGACATCTATACCAGCCTTGGGTAGGGGCAGGCCTCTTAGCCTTCCCTGCTTCCAAGCAGTGGTCATCCCAGTAAGGGTCTTTCCTATGCTGTGCCTTTAGGATCACCTGACGGACAGAGTGAAAGCTGGAGGGCCTCACCACATGGGCCTGGAAATAGTGAGAAGTGATTGTAAGGAGCTTTAGGACAGCTTAGATGCCAAGTAGGCAAATGCCAGACCAACAATACCCAGAACTACCTGCTCTCTTGTTTTCACTCTGGATTCTCCATTTTGGACCCAAACTGAGAAGCCCAGAGCTGCTGCTAGGAGACTGGAGCCAGGGTACCCAAGGGAGCCCATCTCCGGGCGCCCACCCTTGGTACAGGCCACCTCGCTTCGCAGCCCAGGGAGGAAAGGAGAGGGGGTATGTAAACAGCTGTGGGAGTCGGGAGTCTCAGGAGTTGCAGCAa
>NM_005730.4
CTCTTGTTTTCGCTCCGGATTCTCCATGTTGGACCCAAACTGAGGAGCCCGGAGCTGCCGCTGGGGGATCGGGGCCGGGGGCACCCGGGGGAGCCGCTGCCCGGGCCGCCCGCCCTTTGTACAGGCCGCCTCCCTTCCCGGTCCGGGGAGGAAACGAGAGGGGGGATGTGAACAGCTGTGGAAGTCGGAGTCTCGGGAGCCGGAGCGGGCCcccgcccaggccccccagcccagcccagcccgcgcgcccgcccgtcctcccgcccagccagcccgggcccgcGGGATTGTTAGATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGCAAGGCCTGGTCTCCAAGTCCTCTCCTAAGAAGCCTCGTGGACGTAACATCTTCAAGGCCCTTTTCTGCTGTTTTCGCGCCCAGCATGTTGGCCAGTCAAGTTCCTCCACTGAGCTCGCTGCGTATAAGGAGGAAGCAAACACCATTGCTAAGTCGGATCTGCTCCAGTGTCTCCAGTACCAGTTCTACCAGATCCCAGGGACCTGCCTGCTCCCAGAGGTGACAGAGGAAGATCAAGGAAGGATCTGTGTGGTCATTGACCTCGATGAAACCCTTGTGCATAGCTCCTTTAAGCCAATCAACAATGCTGACTTCATAGTGCCTATAGAGATTGAGGGGACCACTCACCAGGTGTATGTGCTCAAGAGGCCTTATGTGGATGAGTTCCTGAGACGCATGGGGGAACTCTTTGAATGTGTTCTCTTCACTGCCAGCCTGGCCAAGTATGCCGACCCTGTGACAGACCTGCTGGACCGGTGTGGGGTGTTCCGGGCCCGCCTATTCCGTGAGTCTTGCGTGTTCCACCAGGGCTGCTACGTCAAGGACCTCAGCCGCCTGGGGAGGGACCTGAGAAAGACCCTCATCCTGGACAACTCGCCTGCTTCTTACATATTCCACCCCGAGAATGCAGTGCCTGTGCAGTCCTGGTTTGATGACATGGCAGACACTGAGTTGCTGAACCTGATCCCAATCTTTGAGGAGCTGAGCGGAGCAGAGGACGTCTACACCAGCCTTGGGCAGCTGCGGGCCCCTTAGCCTGCCCTGCTTCCAAGCGACGGCCATCCCAGTAGGGGACTTTCCCACACTGTGCCTTTACGATCAGCGTGACAGAGTAGAAGCTGGAGTGCCTCACCACACGGCCCGGAAACAGCGGGAAGTAACTGGAAAGAGCTTTAGGACAGCTTAGATGCCGAGTGGGCGAATGCCAGACCAATGATACCCAGAGCTACCTGCCGCCAACTTGTTGAGAtgtgtgtttgactgtgagagagtgtgtgtttgtgtgtgtgtTTTGCCATGAACTGTGGCCCCAGTGTATAGTGTTTCAGTGGGGGAGAAGCTGAAAGACCAAGACTCTTCCCAAGTTAGCTTGTCTCCTCTCCTGTCACCCTAAGAGCCACTGAGTTGTGTAGGGATGAAGACTATTGAAGACTCCATTGCCAAACCATGGCCTTTCCTCAGTGTTGTAAGGCCTATGCCAAGGATAAAGGAAGGGTATGCCTTTGGGTACTCCAGGCACACACCTTTCTGAAATCCTTCTCCAGCCAGCTGCTGCAGACAAAAGATCACATTTCTGGGAAGATGAGAACTTGTTTCCAGACCAGCATCCAGTGGCCATCAGGTCTTGTGGCCCAAAGGCTATGCTTGCCTCCGGCTGAGTGCCTGGGATAGGCCTTTTCTATGTCTCCCCAAGGCTGGGGTGCTGAGCCTGCCTTCCTCACCACCTAGCCATAGTCTCAAACCTGTGGGGAAGGAGGTTTTCTCCCTGCCCGGGAAGAGGACAGATAACTGATTTCCGTTCTTTTGACTGTGTTTTAAAATTCTCTTTCTAAACACAGAGTGTTGGGCCTGGTTTGTTTCTGACAAAGTTACAGTCCTGGGCCTGTAATGAATGTCGGCGGCGCTGGGGTTGCAGGGAAAAGACAAATCCTCAAAGCGTGGACGTGTGTCCCCATGGCTTGTGGATCAGCTAAGCTCGGGATCATTTCCATAAGTCTGCTTTTCAGGGATTCTCTGCTGGTGCTGGTGCAAGGACTTCTGTTCCAAAGGCTGGGAAAAACTAAGCTGTCCCAGCCCCTCCCATTTCTTGGGCAGGGCTCTTTTCCTGTTGTGTCTTCCCCCAGGGCCTGTCCTGTACCGAGCTCTGTCTGTTCCAGCCTTCATCCTTCCTGGCTGTTGCTTTTCCTCTTAAGGGCCTCAGAACTCTTGCTCTTCCTGGGCTGAGGGGGAATGAGTGTTCTTGCCATTTGCCAGCCTAATGCGCATGCTTTCTGCCTCTGGTAACAGGAGTGAGTGAGCCCCTCAGACCTGCACTCTGGGTGTCTCCTGCTTTCAAAGGTTCTTAATAGTGAATGCTTTAAAATTAAAGTCATCACGAAATGGAAGTTTTCCCAGGGTGGAAAATAAGAGGAAGTGCTGCTGTAATTGGGAGCACAAGGGGCCTCCCAAAAAGGAGCCCCACCTCAGCATCACTGCCTTAATCGTGGCCTCCCTGGGGTGGGTGGGGTTctctcctccctccctccctcctccTGGGGTGGGAGGGCGCTCCTGTTCCCATCTCTGTGTTCCCTGGAGGCAGGTATCACAAAGCATTTGTGAATTGCTTTAGGTGCAGGGACACCACCCACTCAGGACTCTTCCCCATCATCCCTTCCATTGCCACACCCTAGATCCAGCCTCAGGAACTAACAAGTTTTGAGAAAAGCAGGTAGTAGAGCAGCAGCTTCGTGCTCTCAGCGGTGGCTGGCTGGCATTTTTCTCTAGCGTTGTGGTGCCACCTTCCCTTCTTGTCCCAAGGTTATAAGGCCTTGTCTTTCTCTTTGGAATCATAAAGTGGAACAGAGTCCCCAGAACTCATGTGGCCATTTCCGCCAGCATCACTCCCCGGTGCCTATGGGGTCCCGGTGTACCTAAAGGGAGAAGGACCCCATGTGCTAGCCAGAAATATACTGTCTCTTGAAGGAAAGCAGGAGCTCAGACTCTTAGAGCCAGCTGTGGCTTCGGACCCAAGGCCTGACCTAGGCTGCTATCCTAATATTGCAGGAGGGGCCTCTCTTCCAAGCCCCACCCTAAGGGTTAGCCCTTGGCCAAATCTTTTGCCGTCTAGGCCCAGCCAGGCTTTTCTGACTAAATAAGCAATAAGAGGCTCTAAGCTGACTGAGTTGCAAGGACCCTTTCCGCCCTCCCTTGGATCTCCATGTTTTTCCAGATGGCGGAAGAGCATGTGCCACCCCCTTTCCTAACAGACTTGTCCAAGTGCTTGGCGTGGGACCCATGACCAAAGCCCAGGATGGCTTGGTGGGAGTGTCCCTGCTGCATCTGCATGAAGCCCCTGCTTTTTAGGCCTCACTCCCATCAGAACCCTGCCTGCCCACCTGCAACTCCCCCCCAACAATGCCATTCCCACTTGCCCCAGAGAAGCTACTCGGCCAAACCTAGCCAGGGTCTGTTCTTGTGGACCAGAGCCAGCCTAGTCATTATTTGCTGTCGGGTTTCCAGTTTCACCGTGTGTTAGGGTGAGGGATGATTGTAAAATTTGCTCCTCAAAGGAATCAGGCCAGACTCAATTTTGGAGGGCAAGACAGGGAGGAGGCCGCTTCATCCCAGACTCTCTTCTAGGGCTTCCCACCATCAGCCCCTCCCACTTGAGACTGGTCTTTGGGAGGCAATAGGCCACCATGCCTGGTCAGCACCAATTCAAGCCATGCCAGGAATCTGCCTACCTGCCAGGTTCAGTTCTTTTAAGGTGCCTCTTCAGGGACACAGTGTGTCTCTCTGATTGGGCTTCTAAATCAAAAGCCTGATGTTCGTGTCCCTCTCATAGGGGGAGCTTTGGACACAGGACCAGTTTGGAAAAGGGTCAGGTAAGGGTTTCCACTCTGCACATTGTAGAGGGAACACTCTGTAGGCCCATGGGTCCCTTACTAGAGAGGTTGAGTGAATTTGCCTTCAGTTAACATGGGACCTTCTGTTTAGCTTCCTCTTGCTTCCCAAAGATTTTAAGCATTTTGTAAATGTATAAACTCACCTCTGGTAACAGTGGCCCAGACGCTGCTTTGTGCTAAAAGCATGGGAAATGTAAAGGCAGTCTTTCTCTGGGAAATGGATGCTATTCTATTCTGCTGCCCCTACCTGTTCCTGAGGCCTCATTTAGAAAGAAAATCCCCTCAGAAGGCTGTCTGGCACCCAGTGTCCTAGCCAGGCCAAGTATATGAGAAAGGTAAGTCCATTTTCCCCTTCAGGTCCTCAGTGGATTACTTAACCACTGCTGTCCCTCGGTCCCTTTTTCCTAAACGGGTTTAGTTCTGTCTTTTTTCTCCTTTTTTCTAAATGCTGGTAAATATTTACATTCAGCCAGGGAAGAGGAGGCCAGAGGTCGGGCCAGCTGCCCCATTCTTTTAACGTTGTAGGGCCTGCCCATGGAGCGGACCCTCCTCTTTGGGCCTCGTGAGCTTTTTTGCTTATCATGTTCCATTTCGTGCCGCTTTCCCCCTTCAAGATGCCATTTGGAGGGTAGGGGATCTGCTTCCCACTGTGACTGGGCTATGGGATTCTGACTACCTTGCTTACAGATTCATGGTTTGATAAATTTGTTGTATTCAAAAACTTGAAATGCAGGACGCCATTAAGTGTCTGTTTATATTTTTGGAATATTTGTATTACTTACAATTAATTAATAAAAGTGGGTTTAAAAAACCTTTCCAGGAA

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