Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FDPSP4
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr15:42939256-42940281  UCSC
Coordinates (T2T) chr15:40746387-40747412  UCSC
Coordinates (hg19) chr15:43231454-43232479  UCSC
Strand -
Parental Sequence NM_001135822.2
Parental seq. overlap 930 bp
Parental seq. overlap (%) 75.9%
Genomic Region Intergenic
Retrocopy Summary FDPSP4, located on chr15:42939256-42940281, is a retrocopy of the parental gene FDPS. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FDPS
Full Name farnesyl diphosphate synthase
Also known as FPPS|FPS|POROK9
Coordinate chr1:155308801-155320665
Strand +
Gene summary This gene encodes an enzyme that catalyzes the production of geranyl pyrophosphate and farnesyl pyrophosphate from isopentenyl pyrophosphate and dimethylallyl pyrophosphate. The resulting product, farnesyl pyrophosphate, is a key intermediate in cholesterol and sterol biosynthesis, a substrate for protein farnesylation and geranylgeranylation, and a ligand or agonist for certain hormone receptors and growth receptors. Drugs that inhibit this enzyme prevent the post-translational modifications of small GTPases and have been used to treat diseases related to bone resorption. Multiple pseudogenes have been found on chromosomes 1, 7, 14, 15, 21 and X. Multiple transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Oct 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes FDPSP7
Bonobo Pan paniscus FDPSP5
Gorilla Gorilla gorilla FDPSP5
Orangutan Pongo abelii FDPSP6
Green monkey Chlorocebus sabaeus LOC103231848P3
Crab-eating macaque Macaca fascicularis FDPSP8
Rhesus Macaca mulatta FDPSP5
Golden snub-nosed monkey Rhinopithecus roxellana FDPSP4
Gibbon Nomascus leucogenys Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FDPSP4
GGATGAGATGAGGCACCCATAGACAGGAGATGCTATCACCCAGCTGAAGGAGATCCTGTAGTACAATGCCATTGGAGGCAAGTATCACCGGGGTTTGACAGTGCTAGTAGCGTTCTGGGAGCTGGTGGAGCCAAGGAAACATGATGCTGAGAGTCTCCAGCGGGCCCTGACTGTGGGCTGGTGTGTGGAACTGCTGCAAGCTTTGTTCCTGGTGGCAAATGACATCACGGATTCATTGCTCACCGCTGGTAACAGATCTGCTGGTTTCAGAAGCCGGGCGTGGGTTTGGATGCCATCAGTGATGCTATCCTTGTGGAAGCATGTATCTACTGCCTGCTGAAGCTCTATTGCTGGGAGCAGCCCTATTGCCAGAACCTGATCCAGCTCTTCCGGCAGAGTTTCTATCAGACTGAGATTGGGCAGACCCTGGACCTCATCACAGCCCCCCAGGGCAATGCGGATCTTGGCAGATTCACTGAAAAGAGGTACAAATCTACTGTCAAGTACAAGGCAGTTTCTACTTCTACATTCCTGTAGCTGCAGCCATGTACATGGCAGGCATTGATGGCGAGAAGGAGCACGACAATGCCAAGAAGATCCTGCTGGAGATGGGAGAGGGAGAGTTCTTCCAGATCAGGATGATTACCTTCACCTCTTTTGGGGACCCCAGTGTGACCAGCAAAGTTGGCACTGACATCCAGGACAATAAATGCAGCTGGCTGCTGGTTCAGTGTCTGCAACGGGCCACTCCGGAACACTACCAGATCCTGAAGGAGAATTACAGACAGAAGGAGGCCAAGAAGGTGGCCCAGGTGAAGGCAGTATATGAGGAGCTGGATCTGCCGGCCGTGTTCTTGCAATAATAGGAAGACAGTTACAGCCACATTATGGGTCTCATTGAACAGTACGCAGCTCCCCTGTCCCCAGCCATCTTTCTAGGGCTGACATGCAAAATCTACAAAAGTAAAATGTGACCAGAGACTGCAAGGGTGGGGAGAGGAGGCTCTCAATAAATTATTGTGTAAA
>NM_001135822.2
GGGAACTACTCGACCCACAGAGCCGATCGCGGAGCGGATTCTGCTTTTAGGAGTACCCGCCAACAAGCGGGACCGAGCAGGAATCCGTATCTGGGAACAGAATGAACGGAGACCAGAATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCAGAGATAGGAGATGCTATTGCCCGGCTCAAGGAGGTCCTGGAGTACAATGCCATTGGAGGCAAGTATAACCGGGGTTTGACGGTGGTAGTAGCATTCCGGGAGCTGGTGGAGCCAAGGAAACAGGATGCTGATAGTCTCCAGCGGGCCTGGACTGTGGGCTGGTGTGTGGAACTGCTGCAAGCTTTCTTCCTGGTGGCAGATGACATCATGGATTCATCCCTTACCCGCCGGGGACAGATCTGCTGGTATCAGAAGCCGGGCGTGGGTTTGGATGCCATCAATGATGCTAACCTCCTGGAAGCATGTATCTACCGCCTGCTGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTGATCGAGCTCTTCCTGCAGAGTTCCTATCAGACTGAGATTGGGCAGACCCTGGACCTCCTCACAGCCCCCCAGGGCAATGTGGATCTTGTCAGATTCACTGAAAAGAGGTACAAATCTATTGTCAAGTACAAGACAGCTTTCTACTCCTTCTACCTTCCTATAGCTGCAGCCATGTACATGGCAGGAATTGATGGCGAGAAGGAGCACGCCAATGCCAAGAAGATCCTGCTGGAGATGGGGGAGTTCTTTCAGATTCAGGATGATTACCTTGACCTCTTTGGGGACCCCAGTGTGACCGGCAAAATTGGCACTGACATCCAGGACAACAAATGCAGCTGGCTGGTGGTTCAGTGTCTGCAACGGGCCACTCCAGAACAGTACCAGATCCTGAAGGAAAATTACGGGCAGAAGGAGGCTGAGAAAGTGGCCCGGGTGAAGGCGCTATATGAGGAGCTGGATCTGCCAGCAGTGTTCTTGCAATATGAGGAAGACAGTTACAGCCACATTATGGCTCTCATTGAACAGTACGCAGCACCCCTGCCCCCAGCCGTCTTTCTGGGGCTTGCGCGCAAAATCTACAAGCGGAGAAAGTGACCTAGAGATTGCAAGGGCGGGGAGAGGAGGCTCTCAATAAATAATCGTGTAACCTT

Publications

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