Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name UTP6P2
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr15:51858696-51861354  UCSC
Coordinates (T2T) chr15:49666255-49668913  UCSC
Coordinates (hg19) chr15:52150893-52153551  UCSC
Strand -
Parental Sequence NM_018428.3
Parental seq. overlap 1916 bp
Parental seq. overlap (%) 43.1%
Genomic Region Intragenic (TMOD3)
Retrocopy Summary UTP6P2, located on chr15:51858696-51861354, is a retrocopy of the parental gene UTP6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name UTP6
Full Name UTP6 small subunit processome component
Also known as C17orf40|HCA66
Coordinate chr17:31860904-31901708
Strand -
Gene summary Predicted to enable snoRNA binding activity. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Located in chromosome and nucleolus. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes UTP6P2
Bonobo Pan paniscus UTP6P2
Gorilla Gorilla gorilla UTP6P2
Orangutan Pongo abelii UTP6P2
Gibbon Nomascus leucogenys UTP6P1
Green monkey Chlorocebus sabaeus UTP6P2
Crab-eating macaque Macaca fascicularis UTP6P2
Rhesus Macaca mulatta UTP6P2
Baboon Papio anubis UTP6P2
Golden snub-nosed monkey Rhinopithecus roxellana UTP6P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>UTP6P2
TTGATGCACGAATCTCTAATTCCAGGAAAGAGAACTGCTGATTTAATGTTGAGATGCTGAGGCCAGACCTACCATAAGTCCTAAATGTTTTCCAGAATACATGGAAAGCATACGACTGGGTTTTACTTATTATCCCAGTTCAAGTATGAGTATCTCTAATCTAGCTAGGAGCCAGTTAAAATGAAGGAGAAAGTATCCTATGTAGTTTTTTGTAAGAAATGGGCTACTAAAACTCAACTTAGCAAGGTATTCTCTGCCATGTTGGCCATTCATTCCAACAAGCCAGCTTTGTGGATTATGGCAGCCAAATGGGAAATGGAAGACTGCTTGTCTTCAGAAAGTGCAAGGCAACTATTTCTTTGGGCACTGCACTTTCATCCAGAGGGCCCAAAACTTTATCAAGACTACTTTAGGATGGAGCTGATGCATGCTGAAAAACTGAGGAAGGAAAAGCAAGAATTTCAAAAAGCCAACATGGATGTGGAGAATCCTGATTATTCTGAAGAAATCCTTAAGGGCAAATTGGCACGGATCATCTATGAAAATTCTGTAAGCATAATTTAAGGTGCAGAATTTCATGTGTCACTGCTTTCAACTGCACAGCGATTTGACTTTGCCAAAGGTCTACAAATAGAAATTTATGATGACCCTCAGGCTCTACACACAGATGATCTTCTCACTTGGGATTATGCGGCAAGGTGACAATTAGAGATCGAGTCACAAACGGGAGAAGAGCAGCGTACAGCCTACAACGAAATAAGACAAAGCAGAGGAGGGCCAGAAGGAGGACAGATGCTGTGCCGTATATGAAGAGGCAGTGAAGACTCTGCCAAGGGAGGCCATGTGGAAGTGTTATATCACCTTTTGCTTGGAAAGATTTACTAAGAAGACAAATAGTGGGTTCCTCAGAGGGAAGAGGTTGGAAAGAACCATGACTGCATTCAGAAGGGCACATGAACTCAAGCTTCTGCCAGAATTCCAATACAAGCAGTTGACTTGAGTTGTTGCTGTGCCATAACTTCCTGAGGAAAGCTCTAGAGGTGGCAGTAGCTGGGACTGAACTGTTTATAGAGACTCTGGGACAATGTGGCAGATGAAGGTGCATGTGCTGATTGACTCAAAGAGCCCTGACATAGCCATGCTTTTTGAGGAAGACTCTGTGCACCTGAAACTCCAGGTTTGTCTACCATTGTGGACTTCTTGGCAGAGTGGAGTGAAGGTGCCAAAAGCCAAGAAGACACCGAGGCAATCTTTAAGAAAGCTCTCTTAGCTGTCACAGGTGCCAACTCAGTAACCCTGAAGGATAAGTACCTGGATTGGGCTTATCAACATGGTGGCTACAAAAAAGCCAGAGCTGTGTATAAAAGTTTACAGAACAGCCATCCATTTTCAGTTGACTTTTTCAGGAAAATGATTCAGTTTGAAAACAGCAAGAATCCTGCAAGATGGTGAACATTAAGAGAATATTATGAGAGGGCTTTGAGAGAGTTTGGATCTGTAGATTCTGATCTTTGGGTGGATTGTATCAAGGAACCATTGAACCACCCCCTTGGTAGACCTGAAAACTGCAGACAGATCTACTGGCGAGCAATGAAAATGTTGCAGGGAGAGTCAGCAGAGGCATCTGTAGCTAAACATGCTATGTATCAGACTGGCCGTTTGTGAAGAGGAAGAATACAGCCATCTTTGTGAAACAGTATTGCAAGCCCTGTGGGCAAATATGTATTATGAGTCCATTTTTGTAATTTGTTCATCGATGGCAGACAAGATGGCTGTCTGATTTCAAGACACACTTTAATTTTATATTAACTTGTTAATTTTTTAAAAAATTTAAAAAAAGATTTTATGATTGGGAGCTTCCTGCACGTGTTCGCGGTTGAGAAGCTCCCATGGGGTTGTAGAGTTCGGACCTCATGGCAGAGATAATTCAGGAACACAAAGAAGATCAGCTCCCTGAATTGGAACAGCTAGAGCACATTGGACTGTTCAGTCATGCAGAGATTAACGCTATCATTAAGAAGGCTTCTGATCTACAGTACAGAATCCAGGAAAGAGCCCTTTTCAAGGACGACTTTATCAATTATGTTCAACATGAAATTAATCTTTTCGAACAGATCCAGAGAAGAACACGCATTGGATATTCATTTAAGAAGGATGAGATTGAGAATTCTATTGTACACCAGGTACAAGGTGTTTTCCGAAGTGCCTCAGCAAAGAGGAAAGACGATGTTCAACTTTGGCTCTCCTATGTAGGt
>NM_018428.3
GTCTCCGAACCTGAAACCGGGAGCTTCCTGCTCGTGTTCGCTGTTGAGAAGCTACCCGCGGGGTTGTAGACCTCGGACCTCATGGCAGAGATAATTCAGGAACGCATAGAAGATCGGCTCCCGGAATTGGAACAGCTGGAGCGCATTGGACTGTTCAGTCATGCGGAGATTAAGGCTATCATTAAGAAGGCTTCCGATCTAGAGTACAAAATCCAGAGAAGAACCCTTTTCAAGGAAGACTTTATCAATTATGTTCAATATGAAATTAATCTTTTGGAGCTGATCCAGAGAAGAAGAACACGCATTGGATATTCATTTAAGAAGGATGAGATTGAGAATTCTATTGTACACCGGGTACAAGGTGTTTTCCAGCGTGCCTCAGCAAAATGGAAAGACGATGTTCAACTTTGGCTCTCCTATGTGGCTTTTTGTAAGAAGTGGGCTACTAAAACTCGACTTAGCAAGGTATTCTCTGCCATGTTGGCGATTCATTCCAACAAACCAGCTTTGTGGATTATGGCAGCCAAATGGGAAATGGAAGATCGATTGTCTTCAGAAAGCGCAAGGCAACTATTTCTTCGCGCACTGCGCTTTCATCCAGAGTGCCCAAAACTTTATAAAGAATACTTTAGGATGGAGCTGATGCATGCTGAAAAACTGAGGAAGGAGAAGGAAGAATTTGAAAAAGCCAGTATGGATGTGGAGAATCCTGATTATTCTGAAGAAATCCTTAAGGGCGAGTTGGCATGGATCATCTACAAAAATTCTGTAAGCATAATTAAAGGTGCAGAATTTCACGTGTCACTGCTTTCGATTGCACAGCTATTTGACTTTGCCAAAGATCTACAAAAAGAGATTTATGATGACCTTCAGGCTCTACACACAGATGATCCTCTCACTTGGGATTATGTGGCAAGGCGAGAATTAGAGATTGAGTCACAGACAGAAGAGCAGCCTACAACGAAACAAGCCAAAGCAGTGGAGGTCGGCCGGAAGGAGGAGAGGTGCTGTGCTGTGTATGAAGAGGCAGTGAAGACTCTGCCAACAGAGGCCATGTGGAAGTGTTACATCACCTTTTGCTTGGAAAGATTTACTAAGAAGTCAAATAGTGGGTTCCTTAGAGGGAAGAGGTTGGAAAGAACCATGACTGTATTCAGGAAGGCACATGAACTGAAGCTTCTGTCAGAATGCCAATACAAGCAGTTGAGTGTTTCGTTGCTGTGTTATAACTTCCTGAGGGAAGCTCTGGAAGTGGCAGTAGCTGGAACTGAATTGTTTAGAGACTCTGGGACAATGTGGCAGCTGAAGCTGCAGGTGCTGATCGAGTCAAAGAGCCCTGACATAGCCATGCTTTTTGAAGAAGCCTTTGTGCACCTGAAACCCCAGGTTTGTCTGCCATTGTGGATTTCCTGGGCAGAGTGGAGTGAAGGTGCCAAAAGCCAAGAAGACACTGAGGCAGTCTTTAAGAAAGCTCTCTTAGCTGTCATAGGTGCCGACTCAGTAACCCTGAAGAATAAGTACCTGGATTGGGCTTATCGAAGTGGTGGCTACAAAAAGGCCAGAGCTGTGTTTAAAAGTTTACAGGAGAGCCGACCATTTTCAGTTGACTTTTTCAGGAAAATGATTCAGTTTGAAAAGGAGCAAGAATCCTGCAATATGGCGAACATAAGAGAATATTATGAGAGAGCTTTGAGAGAGTTTGGATCCGCAGATTCTGATCTTTGGATGGATTATATGAAAGAAGAATTGAACCACCCCCTTGGTAGACCTGAGAACTGTGGACAGATCTACTGGCGAGCGATGAAAATGTTGCAGGGAGAGTCAGCAGAGGCATTTGTAGCTAAACATGCTATGCATCAGACTGGCCATTTATGAAGATGAAGAATACAGTCAGCTTTGTGAAATAGTATTGCAAGCAAGCCCCGTGGGCAAATTTGTATTGAGTCCATCTGTAATTTGCTCAGTGATGGCAGACAAGATGGCTGTCTGGTTTTGAGACACACTTTAATTTTATGTTAACTTGTTAAATCTTTTTAAAAATTAAAAaatttttatgattgagactgggtcttgctctgttgccctggctggtcttgaactcctggactcaagtgaccttctcacctcagactcctgagtagctgggattataggtgcatgacactgcTCAGTTTGATGTGCTAATCTGATTCCAGTAAAGAGAATTGCTGATTTAATGTTGAGGCCCGATCTTCCACAGGTCCTAAATGTTTCCCAAAATACATGGATAGCATACGACTGGGTTTTTTTAAAATTATCCCAGGTCAAGCATGAGTATCTCTAATCTCGACCTAAGAGCCAGTTAAAATGAAGGAGAAAGTggccaggcatggtgactcaacgcctgtaatcccagcactttgggaaggctgaggcaggcggatcacctgaggtcaggagtttgagactagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggtgtggtggtgggtgcctgtaatcccagctgcttgggaggctgaggcaggagaattgcttgaacctgggagacggaggttgcagtgagccgagatcatgccattgctactccatcctgggtaagaagagcgaaactccttctcaaggaaaaaaaaaaaggagaaaGTACAGTTTTGTTGGTTTATTCTCATTATAAAAGATACGTGGTATGCATTTGTTCTGGAAAATATGGAGGAAATAGAATAGTGTGGTAAAAAAAAGCATCCTGTCACTGGGAGAAGCTTTCAGTGTAGCTTATTGTTACGtttcacttagtattgtttttctgtgtcattaaatagccttaaaaacatttaatgaattcgtaacattacattgtaaaaatgagccataatatattttactaatcctctggttagactgtctttttttttttgagatggagccttgctctgtcatccaggctggagtgcagtggctccatctcggctcactgcaacctccacctcccgggttcaagtggttctggctcagcctcccgagcagctgggtgggattacaggcacccgccaccgcgcccagccaatttttgtatttttagtagtgcgggggtttcatcatattggccaggctggttgcgaactcctgacctcatgatccacccgccttggcctcccaaagtgttgggattacaggcgtgaaccactaagcctggcctggactgtcatttctaatttttttaaaaattagataaatgctgttgatgaagattcttgtcaatctttgttcacatccctggccatttccttaggagattgacatccgacagtggaattactggatcaaaggatactgcttttagagaatactgatatgtattgctggtttgctccttctttcaagcaatacatgaaagtgtcagtacccttacctgtactggtgtaattatatcttttatttttaccattttataggtgaaatgtgatatgtcattgttttaccatactttgatattagtgaagttagtgtattttatgtttCTCATCTTTTTACATCCTTAGACTATTTAAAAATTTTTTTTCTTACTAATTTATGAGTTAAtttttttttttaaattggacaagttcttgctttgtcacctaggctagagtgcagtggtgtgatcatggctcactacagccttaacttctgggctcaagagatcctcccacctcagcctcttgagtagctgggactgcaggtgcacaccaccatgcctggttaatttaaatttttttttgtagagactggtcttgctatgttgccagggctggtctcttaaacagttgggctcaaacaatcctcctacctcaacctcccaaagtgctggtattataggcatgagccattgtgcctggccAGAGTTTTTAAAAACATATTCAGAATATTAATATCTTGTTTCTCATTTGTTGCAAATAATTTTACCCCCAGCCTTGTTTGTGGTGAttttttttttttgagacagagtcttgctctgtggtccaggctggagtgcagtggtgtggtcttactgcaacctctgcctcctaggttcaaacagttctccctgccaaagcctcccaagtagctgggattataggcacCTTTTGTGGCGATTTTTGATGCCCAGAGGTATTTTGTGTGTGTATGTGTGATGTCTGTTTTTAAAATGCTTTGGAAGCTCTTCCTGGTGCTGAGAACAACTCTTTTTCCCCAAGCAGTTAATTTTGCCAACACTATTTGGGCAGTTATGTTTCTCTCTGCTGATTTGTGATGTTACCTTTATTATATATTAAATTTCTATGAGTA

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