Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name IFT80P1
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr15:54047145-54050971  UCSC
Coordinates (T2T) chr15:51856994-51860820  UCSC
Coordinates (hg19) chr15:54339342-54343168  UCSC
Strand -
Parental Sequence NM_001190241.2
Parental seq. overlap 2505 bp
Parental seq. overlap (%) 56.9%
Genomic Region Intragenic (UNC13C)
Retrocopy Summary IFT80P1, located on chr15:54047145-54050971, is a retrocopy of the parental gene IFT80. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name IFT80
Full Name intraflagellar transport 80
Also known as ATD2|CFAP167|FAP167|SRTD2|WDR56
Coordinate chr3:160256986-160399225
Strand -
Gene summary The protein encoded by this gene is part of the intraflagellar transport complex B and is necessary for the function of motile and sensory cilia. Defects in this gene are a cause of asphyxiating thoracic dystrophy 2 (ATD2). Three transcript variants encoding two different isoforms have been found for this gene.[provided by RefSeq, Jun 2010]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes IFT80P1
Bonobo Pan paniscus IFT80P1
Gorilla Gorilla gorilla IFT80P1
Orangutan Pongo abelii IFT80P1
Gibbon Nomascus leucogenys IFT80P1
Green monkey Chlorocebus sabaeus IFT80P1
Crab-eating macaque Macaca fascicularis IFT80P1
Rhesus Macaca mulatta IFT80P1
Baboon Papio anubis IFT80P1
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>IFT80P1
TTTAAAAATGTACCTAAAATGGGTAAGAAGGCTTCTCCTCACTCCTTTCCTGACTTGAGATGGTCAGGCAATAGGCCCTGAAGTCTGAATTTGTGAAAATCCCTCTTCGATCAAATGCTAAAGTTTTACAGAAGGCTTATGATGGCATCATTTTAAAAATAGATTGGAACTCAGTCAATAATCTTATCTGCTGGTGAAGACTGTAAATATAAGGCATGGGATAGTTACAGCCACCCACTGTACAATTCACAATCTCATGAGCATCCTATTACTTTAGTTGCCTGGGCTCCAGATGGAGAATTGTTTGCTATTGGATTATTTCATACTTTACACTTACGTAATAAAACTGGGTGATCACATGCTTTAGAAAAACACTGGTAGCATATTTAATATTGCGTGGTCAACTGACGGCACTCAGACTGCTGGAGTGTGTGGAATTGGGCATGTTGTTTTTGCACCTGTGGTGGAAAAACACTGGGAGTGGAAAAAGTTTCAAGTAATATTAACTAAAAGAAGGACCATACAGGTTCGTAACATTCTTAATGATGCAGTGAACTTATTGGAATTCCATCATGGCCACTAAAGTATCTTTGAACTCTGCACACTTAGTTGTTTCAATGTCTCTTCAATGTTATGTGGTCTCCACAAAGAACTGGAATACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTTATCCTGCAGGCAGAAAGACATTTTCTTCTTGTAGATGTTAGTAGTATCGATTTATATTCATATGAAGGGCCCTTTATTTCATCTCCAAAATTTCCTGCAGTGAGAACACATATTCTGAATGCACAGACTGTGTCTCTGAGTAATGATACCATAGCAATGAGACAAAGCTGATGAAAAAATAATCTTTTTCTTCAAGGTATCAACTGGAAAACTATTAGATGATGGAAAGCTTCTTCCTCGTAAGGATGCAATCTTGAAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAGTCACTTTCATTGATAAAAATAGAGATATCTATATCACTTCTGTGAAACGATTTGGGAAGGAAGAAAAAATTCTCAAACTTGGAACAATGGTGCATACTTTGGCCTGGAGTGATACATGCAATGTCCTTTGCAGGCTTCAAGATACTCAATTTACAGTGTGGTATTATTCCAATATGGTTTATGTGGACAGTGACACTTTGCCTAAAACATTACGTGAAAGGGATACAAACGAATTCAGTAAAAATTCCCAAATTGTGAGTTTTGTTGGAAATCAGGTAACTATAACAAGAGTTAACGGCCCTCTGGTTCACATCAGTGTATCACCATATCCTGTTATTCTCCCTGAATATGGAGGCAGTTCAAAATGGGAAGATGATGTAAGACTTTGCTGCTTTGTTGAGGAGCAAACAATGTGAGCTTGTCTAGCTGCTATGGCAGTTGCTAATCAAAATATTACTATGACAGAAATAGGCTATGCAGCAATTGGCGAAATTGATAAGTTTCAGTACATCAATTCTATAAAAAGTCTTCCATTTAAAGAGTCAAAAAATGGCCCACATACTAAGGTTTAGTGGAAACATACAGGAGGCTGAAATAGCACTTCTTCAGGCTGGCCTCATTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGAAAAGGGCACTGGAATTGGCTGCAAAATACAAAACACATGTTGATACGGTTGTTGCTTACTGTCAAAAGAAAAGTTTTTGGAGACATTTGGTAAAGAGGAAACATAAACAATACTTGCAGTATGCAGAAGGTCTCCAAATAGATTGAGAGAAAAATCAAAGCCAAAATTGAGATTGAAATTACAAAAGAAGGAGAACAATCATCAAGCAGCCAATCCAGTAAGAGTATGGGTCTAAAGCCCTACATGCCATGCTTATATTTAAGAAGTTTTGTATTTTGAAATGAATTCTGATTAACTAAGGATAAGCATGTTTTGGCTGATAAAAAAAGGATTACCTTTAAATAAGTATAAGCACTTGCTGTGTATTTAACGTAAAAGTACATTCAGAAAGATGAAAAACAAAGTAATTTATGTACTTCTTGGTTTTATATTTTTCTAAACCAATAATTAGCAAAATATTACGGTATACTTACGATATGCCTGTGTAGTGTTAATTATATTTCAGTTTTTTGCCCATTATTTCATCCCTGAATCTTCAGCCTGAAAAAATATGAATGCTGATAATAAAACATTGAACTATTTAAAAATGTATGTTATTATTAATTTCTATTTGACCTCTAAATTGTGAAATGCCTCGAAAAGTTTATTTATAGAACAAAAATACTTGAGGATGGATTTGCGCAAATGTTTAAAAAGGGTACCAGCTATATGAAAGCAATTGCCACTGCTTTCCTGGAACTTGAGTAAATACAATCAAGTGGCATTTTAAATTTTTGCTGGAAGTGGAGTCATGAGACTGAAGATATCTCTTTTAAGAGAACCAAAGCATCAAGAATTAGTAAGCTGTGTAGGCTGGACTACTGCTGAAGGGCTGTATTCATATAGTGATGATCACCAGATAGTGAAGAGGAACTTGTTCACTAGTGGAACAACTCAAATAGTAAAGCTTCCTGATGATATTTACCCTATAGATCTTCACCGGTTTCCAAAGAGTTTGAGTATAAGAGACAAATTCAAGCAGAAAGCTTTGTCCTCATAAGTTCTGATGATAAATTTAATTTGATTTCCAAGTTAGAAAGAGTGGAAAAAAGTGTAGCAGCTCACTCTGGAGAATACTTGCAGGAAGATAGAATGATGAAGCAACAGCATTAGTTACAATTGGAGAAGGTGGACAAATAAAAATTTGGTCAAAGACTTGGATGCTTAGATCAACTTTAGCTCAGCAAGCCCAGGTCAGCTCCTGACTACTCCCAGAGAATATTCCCAGAAAATATACTTATCAAGTACAGAAAAAGGAGGAGTGCCTTCTGAGGAATGGTATTCAGTAGTGTGGGGTCCTGATTCAGAAAATGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAGTg
>NM_001190241.2
GTAACTCTTAGAAGTCACTATGGTGACGGGGAGGTACCAGGTATTTGAGAGCAATCGCCACCGCTTTCCTGGAACTTGAGTAAATACAATCAAGTGGCATCTTAAATTTTTGCTGGAAGTGGAGTCATGAGACTAAAGATATCTCTTTTAAAAGAACCAAAGCATATCCTTTTAATGCTTATAAATCTTATTGGATTTTCTTAATTATAGTATTGTTAAAAGTTTCTCTATTTTATATCCTAGTTGAAGAATAGATTTTTTTTTTCATTCCTTTAGTGGCTGTTTACCTAAATTGTTTTAAAGTATTTAAGATCATGTGTTaaaaatctggtccttcatcagaactaggaaagcactgATTTAAACATTTGGTCAGACATTTTAAATTGAATTAGTAAGCTGTGTGGGCTGGACTACTGCTGAAGAGCTGTATTCATGTAGTGATGATCACCAGATAGTGAAGTGGAACTTGTTAACCAGTGAAACAACTCAAATAGTAAAGCTTCCTGATGATATTTACCCTATTGATTTTCACTGGTTTCCAAAAAGTTTGGGTGTAAAGAAACAAACCCAGGCAGAAAGCTTTGTCCTCACAAGTTCTGATGGTAAATTTCATCTGATTTCCAAGTTAGGAAGAGTGGAAAAAAGTGTAGAAGCTCACTGTGGAGCAGTACTTGCAGGAAGATGGAATTATGAAGGAACAGCATTAGTTACAGTTGGAGAAGATGGACAAATAAAAATTTGGTCAAAGACTGGGATGCTTAGATCAACTTTAGCTCAGCAAGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCAGAAAAGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTGGAAAGCTCATGATGGCATTATTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTATTTTATCTGCTGGTGAAGACTGTAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCTCATGAGCATCCCATTACTTCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTTACGCTTGTGTGATAAAACTGGGTGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGGTCTATCGATGGCACTCAGATTGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTGGAACAACATTGGGAGTGGAAAAATTTTCAAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTTCTTAATGATGCAGTGGATTTACTGGAATTCCGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAATGTTACGTGTTCTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAGGCAGAAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATATTCATATGAAGGGCGCTTTATTTCATCTCCAAAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGTGTCTTTGAGTAATGATACCATAGCAATAAGAGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAGTTTCTTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTGCTTTCATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAGCTTGGAACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCCTTTGTGGACTTCAAGATACTCGATTTATAGTGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGTGAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCAAGTAACTATTAGAAGAGCTGATGGCTCCCTGGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAAGATGCTGTGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCGAGATATGACTACTGCAGAAATAGCCTATGCAGCAATTGGTGAAATTGATAAGGTTCAGTACATCAATTCTATAAAAAATCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTAGTGGGAACATACAGGAGGCTGAAATAGTACTTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACTGGAATTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTGGTAAACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCCAAAATTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAAGCCCTAAATGCCATGCGTATCTTTAAGAAATTTTATCTTTTGAAACACGTTCTGATTAACCAAGGGTAAGCATGTTTTGGTTGCTAAAGAAAAAAGCATAATCTTTAACCGAGTATAAGTACTTGCTGTGTATTTAGTGTAAAAGTACATGCAGAAAGATGAAACACAAAGTAATTGATGTATTTCTATCTTTTATATTTTTTAGTCCAATAATTAGCAAAATATTACTATGTACTTAAGAGATACCTGTGTAGTGTCGATTATATGTCAGTTTTTTGCCCATTACTTCATCCCTAAATCTTCAGCATGAACAAATATTAATGTCGATAATAAAACATTGGACTCTTTGAAATGTATGTTACCATTAATTTCTATTTGACCTCTAAATTGTAAAATGCCTCCAAAAGTTTATTTATAGAACAAAAATACATGAGGATGGATTTGTACAAATGTATAAAATGCCACtatttatacaccaagttcatagcagcattactggaatagcaaaagatggaaacagctcaagtgtctatcatgaatggataaacaaatgtgctataatacatacaatggaatattatttagctttaaaaaggaatgaaattctgataaatactacctcaggataaaccttgaaaacactatgctaagtgaaataagccagacacaaaaggccaaatatgatgccacttttatgaggtaccagcataggcaagttcacagaaacagaaaggagaatagtggttgccagggactgcagggaggaggaaatggggggtggggttattgtttaacgagtacatagtttctgtttgggatgaacaaattctggaaatggatagcgatgatggttgctcaacattttgaatgttaatgccactaaattgtacccataaaaatggttaaaatggtaaattttgttatgtatattttatcataatttaaaaaaTATATCTAGAATGGGCAAGAAGGATTCTCCTCATTCCTCTCTTGACTTGAGAATGATCAGTCAATAGGCCCTGAAGTCTGAATTTGTGAAAATTTCCTTGGGTGACAAACTTGTTTGATTACTCTATTTAGTGTATCCCAAAGTTATTACCACATAATCTTTTAAACAATAAAACAAATACCCCTTAGAAAGTCTTCTGCAAACCCATTTCTGAAAATGGTACATTATAGGGTGGGtatagatgcatagatatgggattatgtatgatatatatatatataCACACACACACAAAGGGATAGAGAGATTACCTCTCTTAACCCCCATTTTAATTACTATGTCTAGGTTTTTTAAATAAAAATCTTTTCTTTTTAACATGTTTCTTTTCTTTTCCGGAATATTGGAATATTCTGTTCTTGATCCAGATGAAATCTGATTGAGCAGTGTACTTACAAGTTGTACTGTGTATGTGTTTCCTATATTGTTATATTTCAATAAGAAGCTTAAAATGTTTAAAAATaaatggttaaaaggttttatgttatgtatattttaccacaataaaTGCAAAAAATAAAAAGTCTGTGTTCTAAACAA

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