Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name DNAJB14P1
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr15:65769703-65772154  UCSC
Coordinates (T2T) chr15:63579126-63581577  UCSC
Coordinates (hg19) chr15:66062041-66064492  UCSC
Strand -
Parental Sequence NM_001278310.2
Parental seq. overlap 2368 bp
Parental seq. overlap (%) 40.8%
Genomic Region Intragenic (DENND4A)
Retrocopy Summary DNAJB14P1, located on chr15:65769703-65772154, is a retrocopy of the parental gene DNAJB14. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DNAJB14
Full Name DnaJ heat shock protein family (Hsp40) member B14
Also known as EGNR9427|PRO34683
Coordinate chr4:99896248-99946618
Strand -
Gene summary Enables Hsp70 protein binding activity. Involved in cellular protein-containing complex assembly and chaperone cofactor-dependent protein refolding. Located in endoplasmic reticulum. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes DNAJB14P1
Bonobo Pan paniscus DNAJB14P1
Gorilla Gorilla gorilla DNAJB14P1
Orangutan Pongo abelii DNAJB14P2
Gibbon Nomascus leucogenys DNAJB14P2
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DNAJB14P1
GAAGGAGCAAGCTATGGAGGGGAACAGGGATGAAGCTGAGAAATGTGTCGACATCGTCCAGGAGGCTCTGAATGCTGGCAACCGCGAGAAGGCCCAGCGTTTCCTGCAGAAGGCCGAGAAGCTCTACCCACTGCCCTTGGCCTGCGCATAAACAAATATAAAAATTACTATGAAGTACTTGGAGTTACGAAAGATAGTGGTGATGAAGATTTGAAAAAAGCTTATAGAAAGCTTGCTTTGAAGTTTCATCCAGACAAAAACCATGCACCTGGAGCAACAGATGCTTTTAAAAAGGTTGGGAATGCTTATGCTGTTTTAAGTAATCCAGAAAAGCGAAAACAGTATGACCTCACGGGCAATGAAGAACAAGCATGTAACCACCAAAACAATGGCAGATTTAATTTCCATAGAGGTTTTGTGAAGTTGATATAACTCCAGAAGACTTGTTTAATATATTTTTTGGGGGTGGATTTCCTTCAGGTAGTATACATTCTTTTTCAAATGGAAGAGCTGGTTATAGCCAACAACATCAGCATTGACATAGTGGACATGAAAGAGAAGAGGAAAGAGGAGATGGAGGTTTTTCTGTGTTTATCCAGCTGATGCCCATAATTGTATTGATCCTCGTGTCATTATTAAGCCAGTTGATGGTCTGTAATCCTCCTTATTCCTTCTATCCCAGATCTGGAACAGGGCAAACTATTAAAACGCAGACAGAAAACTTGGGTGGTGTTTATTATGTCAGCAAGGACTTTAAAAATGAATATAAAGGAATGTTATTACAAAAGGCAGAAAAGAGTGTGGAGGAAGATTATGTGACTAATATTCGAAATAACTGCTGGAAAGAAAGACAACAAAAAACAGATATGCAGTATGCAGCAAAAGTATACCGTGGTGATCGACTCCGAAGGAAGTCAGATGCCTTGAGCATGGACAACTGTAAAGAATTAGAGCGGCTTACCGGTCTTTATAAAGGAGGATGAACTGGAATTTTTATTTATACCTTTTAGCGTACTCTTTATTTTTTCTGTAAGTAAGTTTAGTTTCATCATGAGAGATGAAGGGAAAGATCTGATACTGAAAATTAAACTGAATAGTTGGTTCCTGAAATCTTGGACTGTTTATGACCTACTGGCTCCTTTAAATAGTAACTGAAAACTAAAATGGAATATTTTAGTTACGCTTCTACAATTATTTTCATTTTAAAAGCTTGCATGATTCCTAACTAAAATGTCTTGAGAAAGGATTATCACACCTGTAGCAATTTCCAGTTTTAGTGATTCTCCATTTTTTCCCTTGTCATGTAAAGATTTATGGAATGATCACTTTGTGTACATACAGGTTACTGCTTTTTTATTTAAATTCTTTTAGTGTTTTGCTCCGTGAGACACTTCAGTTTAAATTGATGGAATAAATGTTATATGACACATTTACGTTTTCCTTATCAAGGTGTCAAATATGTGGACTTTAAACAATGAAACTTTTTCAAAAAGAAAAAACAAAAACTTTAACTTTGTGTAAAATCTTATAGTATTATCAGCTTAGAGGGAATTGATATTTTTAATATTGCCGTTATATTCCAAAATATATATTGAGATAAATGAACTGATGTAGAATATCATTTTGCTATTTAGTTTTATGAATTACTATACATATACATGCATAGAAATGAAATGCTATACTGATAGATTTTAAAGAAAATATGAGGAAATGGCTATAAATAGTAAACTAAAAGGGTCTTCAACAGTAAAGTGCAGTTATGTCATTTACAATTCCAATACTTTAAAGGCCACCAAATTTTGATGTGTATGTCCTTGAAGGGCTGCCAAAATTTATGAAGAGGACTCACATTTTCCCCCATAGAAATTTGCAGTTTCTTGGTGATCATTTAAGCAGGATCCAAAGAAGTTCTTCTACAAATAAGTAATAAGAAAAATGAATACTAAAATACAGCTTTGTGCCTTTTAACCTTATGCCAACTCCTAAACATGTAAGTAGATTATAGTATACTTATCTGATCAGAGCATGATCTGTTTGGCCACATGCAAGTGTGAGCAGAAATAGAGCAGCAGGTAGAATAGTAACTTAAAGCAAGTCCTCCTTTAAAAATACTGAGCTAAAATCTATTCACCATTGAGTAATTGAATTAATCCTATAGGAATAAGCTCCTTGTAAGTAATTCCATATTATGAATTAGAAAAAAAAAACAGCTGGAAATTGAAGTTTTTGGTGCCTGTATACTGGAGATAAAACTATTTGATTTCTGGTCTTCTGTGTTTAGCAGTTGTAATATTTTAATGAATTTGCTGCATACTCGGTTAATGGAACATAAACATATCTTTGGTACTTCTTTGTGAGTGAAAGAATGCTGGATAGGGTGGCTTTGTTCTTTAAATTTTTTTCTGAATGTAGTTAATTTATGGCATCTGTTGAATAAAACTGCTa
>NM_001278310.2
gccCTTCTTAGCTGCGCTGCCGGAGGAAACGGAAGAAGGAGCAAGCTATGGAGGGGAACAGGGATGAGGCTGAGAAATGTGTCGAGATCGCCCGGGAGGCCCTGAACGCCGGCAACCGCGAGAAGGCCCAGCGCTTCCTGCAGAAGGCCGAGAAGCTCTACCCACTGCCCTCGGCCCGCGCATAAACAAATGTAAAAATTACTATGAAGTACTTGGAGTTACGAAAGATGCTGGTGATGAAGATTTGAAAAAAGCTTATAGAAAGCTTGCTTTGAAGTTTCATCCAGACAAAAACCATGCACCTGGAGCAACAGATGCTTTTAAAAAGATTGGAAATGCTTATGCTGTTTTAAGTAATCCAGAAAAGCGAAAACAGTATGACCTCACGGGCAATGAAGAACAAGCATGTAACCACCAAAACAATGGCAGATTTAATTTCCATAGAGGTTGTGAAGCTGATATAACTCCAGAAGACTTGTTTAATATATTTTTTGGGGGTGGATTTCCTTCAGGTAGTGTACATTCTTTTTCAAATGGAAGAGCTGGTTATAGCCAACAACATCAGCATCGACATAGTGGACATGAAAGAGAAGAGGAAAGAGGAGATGGAGGTTTTTCTGTGTTTATCCAGCTGATGCCCATAATTGTATTGATCCTCGTGTCATTATTAAGCCAGTTGATGGTCTCTAATCCTCCTTATTCCTTATATCCCAGATCTGGAACTGGGCAAACTATTAAAATGCAAACAGAAAACTTGGGTGTTGTTTATTATGTCAACAAGGACTTCAAAAATGAATATAAAGGAATGTTATTACAAAAGGTAGAAAAGAGTGTGGAGGAAGATTATGTGACTAATATTCGAAATAACTGCTGGAAAGAAAGACAACAAAAAACAGATATGCAGTATGCAGCAAAAGTATACCGTGATGATCGACTCCGAAGGAAGGCAGATGCCTTGAGCATGGACAACTGTAAAGAATTAGAGCGGCTTACCAGTCTTTATAAAGGAGGATGAACTGGAATTTTTATTTATACCTTTTAGCGTACTCTTTATTTTTTCTGTAAGTAAGTTTGGTTTCATCATGAGGGATGAAGGAAAAGATTTGATACTGAAAACTAAACTGAATAGTTGGTTCCTGAAATCTTGGACTGTTTATGACCTACTGGCTCCTTTAAATAGTAACTGAAAACTAAAATGGAATATTTTAGTTAACGCTTCTACAAGTATTTTCATTTTAAAAGCTTACATGATTCCTAACTAAAGTGTCATGAGAAAGGATTATCACACCTGTAGCAATTTCCAGTTTTAGTGATTCTCCATTTTTTCCCTTGTCATGTAAATATTTATGGAATGATCATTTTGTGTACATACAGGTTACTGCTTTTTTATTTAAATTCTTTTAGTGTTTAGCTCCATGAGACACTTCAGTTTAAATTGATGGAATAAATGTTATATGACACATTTACATTTTCCTTATCAAGGTGTCAAATATGTGGACTTTAAACAATGAAACTTTTTCAAAAAGAAAAAACAAAAACTTTAACTTTGTGTAAAATCTTATAGTATTATCAGCTTAGAGGGAATTGATATTTTTAATATTGCCGTTATATTCCAAAATATATATTGAGATAAATGAACTGGTGTAGAATATCAGTTTGCTATTTAGTTTTATGAATTACTATACATATACATGCATAGAAATGAAATGCTATACTGATAAATTTTAAAGAAAATATGAGGAAATGGCTATAAATATTAAACTAAAAGGGTCTTCAACAGTAAAGTGCAGTTATGTCATTTAAAATTCCAATACTTTAAAGGCCACCAAATTTTGATGTATATGTCCTTGAAGGGCTGCTAAAATTTATGAAGAGGACTCACATTTTCCCCCATAGAAATTTGCAGTTTCTTGGTGATCATTTAAGCAGGATCCAAAGAAGTTCCTTTACAAATAAGTAATAAGAAAAATGAGTACTAAAATACAGCTTTGTGCCTTTTAACCCTATGCCAACTCCTAAACATATAAGTAGATTACAGTATACTTATCTGATCAGAGCATGATCTGTTTGGCCACATGCAAGTGTGAGCAGAAATAGAGCAGCACGTAGAATAGTAACTTAAAGCAAGTCATCCTTTAAAAATTCTGAGCTAAAATCTATTTACCATTGAGTAATTGAATTAATCCCATAGGAATAAGCTCCTTGTAAGTAAATCCATGATATGAATTAGAAAAAAAAAACAGCTGGAAATTGAAGTTTTTGATGCCTGTATACTGGATATGAAACTATTTGATTTCTAGTCTTCTGTGTTTAGCAGTTGTAATATTTTAATGATTTTGCTTCATACTCGGTTAATGGAACATAAACATATCTTTGATACTTCTTTGTGAGTGAGAGAATGCTAGATAGGGTGGCTTTGTTCTTTGTTTAAGTTTTTTTTCCTGAATGTAGTTAATTTATGGCATCTGTTGAATAAAACTGCTAAAATGACCTCTTAAAAATGTTCTGTTGTATCCCCTTTTCCAGGTGAATCAATAGAAATGCCTGATTGAATTAGTAGGTTAAACTAAACAACATACTGTCATAGGAAAACTGGAGAGCTTAACCAACTTGCTCTTAGAAATGTTACCTTAAAAAAAAAAAAAAAGCAGTGCTTAAGAGAAAATACAATTTTAATTATTTTGTTGAGCCTGCAGAGTAAGTTTTTAAAAATATAAGTTCATAGCATTTTAATTAACTTTGAAAGTTCATATGCATCAGAAAATTTATGAAAATTTGAATGAAAAAAATTTCATCTATTTATTTTTCTAATTTTAATGGCAAATTTACACTATTATGGCTGATAATTCTGTGAACTTACCTTCTTGTTGACTGATTCTTTTTCCCTTAATCCCAGCTTTAAGGAGATAGGTGAAGTTATTGTACAAAGTTAAGTGATACCATAAAGTATATATTATAAAGTCATACATGGCTTTTGGACAGTATTATATTTCAGTTGCAGTGCTGCATTCCATTAAATTTCATAAAATGCTAGGGAAAATGTGTTTGATAAAATTTTCTGCAGTGAGAAATGACAGACTGAGTGCCTGACAATTTAAGCCACATATGAAGTATGCAAGTAAAGATTCAGTCCTTAATGTCATCTATATCATGGTATAAAAGCTCAACAAGTATCTTATAATTTGGAGTTAACTTTATAAAGTAAGAAGAGTTTGGATATCTTGATAAAAGATTTTCATGTTTGCTGCTTTTTTTATAATAAAAATCCCAACATTTTGCCATCTTATGTTTAGCTACATGAACTTCGCAATTTCATCGGCTCATTCTAATGACCACCTAAAAGTCCTCAATCTTTGAATATTGCTTTATTAGCTCCTCTAACTGGTATTCTAACAGTTTAGCAGCACTTATATTTATTAATGCTTTACATTTTTACCCCTTTTTGTGTAAACACAAATACACCCATGCATATACACACAAACATTATTGTCCTTGTGAGGGTTTGGGGGAAATGAAAAATAGTACCTTTCTCCTCTTCTTTTGATTCCTTAGTTCCCAAATAGACTGGTGCTAGTCATTTAGTCATCTGTAAATTTCGAAATGTAGTTTGATTAAATGTGAACTGAATTCTCAGCAATGAAAAATGTCAAGTTGAATTCATCTAATAAGTGAAAATAATATATTTTGTAAACAGATTACATTTGAACACCTAAATAAGTATTTGTTTCATAATCATTACATGCTTGTTTATGATTTACAAAGATTTGGTAGAGAAAAGTACAGTCCTTAAGGCATATATATGCCAATGCATTAAACTACTCAGCTTTTGTGCCAGCTCAGGTGTTCATAGGAACAGGAATGTGGAATACCAGCTTTTTACTTTAATTATACTTTTATGCTGAATTTTTCTTCCAGTTAAACCTTTAATTACACTAGTATGTAAAGTAGTTACTGAGAAAAATAAGTTTTTGATTTCCCTTCTGTTGATCTGTAACATTTTTAAATGAAGCTATTTAACACATGACATGCTAATGTTACTTAATGGATTCCTATGTATTTCATTAAAAAAAAGTCTCCCACCTGTGTTAAGACAGCTAAATATTTCTTGATGTTGGCTTGAGGACCAAGTGAGCCATCTTGCCAGTTAAGCAAGTTTTATATCAGAGGACCAAATGGTTAAGAAGAGAATTTGTACATTTCTTGAGCTTCCCCATGTGAAGCTTGGGTTCAGTACTATCCTATTACTATCCATCTTCATAATGAGTGAAGCAAACTGAAAGGGAATTCATAATCTTTTTTCTTATCTGAACAGAAAAACTAATGAAAATCAACAATAAATCTTTATTTTAATTTTCATTCAACAGCTGAAAAACCATGTCTGTTGACCACATTGGACCATTGCCTAGTTAAAATCCATAAAATTCCCTATAAACCAATGAAAAGAAACTTGTCTGGCAATAATTTCCAACATTTTAAATTCTAATTTTTAGTTACAAAGAAAAAGGATAGAATGAGGCTTTTCAAGGAATTCTTGCTCATCCCTTCAATTATTTGGCAGGTAAAACAGTCCTAGAATTCAGCTTCCTTTTTGGTTTTATTACTATTAAATAGATACTTTCATATAAATGGAAACACTTTTCCTCAAAACATTAATTCAAAACATACTCCTTATATTAAGGATTATAGCACCATATTTTTTGTATATTCCCTATGTGTAACTTTTTCCTGTTGGTATGTGATATTTTTCATTTAATATGACTATCTGCTGGTGTTGGGGCCAATAGATTTGtgaatattctgtggatgtgtctatgtataggtgtatatatatatatatatatTTTTTTTTTTTTTTCCCAGCTAATTACCTCAAATGTGTGATTGTTTAATATATACCACACTATGTTTGCACAGAGCAGGGCTTCCATTAGCAGTGGATATTTTTATGTCTGACTTTGAAAATCAGTCAACACAATTTCATTGGTGTGAATTATTTGTTGCTCTTTTTCATATTTTAATGGAGAGATTCCTATTATAAGGCCCATGCTTCAAACATAATTATATCTTTCTATATCCAGCCATCTGGAAATACATAGGGGTAAGAAGTATTTCTTGAAATGTCCTTGTTTAGTAAGTTAGTAAAAACTGGGATGACTAGTTGCCAAGATGTCTTGTAACTGCATAGCAGATGACACCTGGCATGGCAAGTCTCATTCACTTCAGCACAACACTCTGTACATTTCAGTCTGATATTCTACTTTGCCATTTAAGGACACCATTAAAATCATAGAGATTTTCAGTGACATTGGAGTATTGTAATTATTACTTTCAAAAAATTATTTTTAATAGGATGATTAAACCAATGAGAAGAAACACACATAAATGATATTTTGCAGTTTATCTGTATTAAGAAATGCTTCTTGCCAATTTCTAGTTTTAGTTTTTGGATTGCTACATAAGACTTTCTTTCCATTTACTTTATGTGTTTTTAAAAGCTGCAGGTAATTTTTAAGGTTTGATGGAATTATAATGGAAGCCTTGTATAAGTTAAATGAAATTGGTAAAGGAGAGCTTACTTTGTCTATAATGCATTCAGGATTAAAAATTAGATTTCAAAATGAAATGTCTGATTTGTAAAATATTTAATGTTATATCAGACTTACATAAAATTTTCTGTGAGAACTCAAATGCATTTGATTTTTAATGAATGTTCTGAATGAAATATGAATTTTTGTCTTTCAGTCTCTGTAGTTTATCTCAATATATTAATAAAAAGGTCTGTTCTCACTGTAAAA

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