Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ASB9P1
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr15:92795483-92797065  UCSC
Coordinates (T2T) chr15:90557744-90559326  UCSC
Coordinates (hg19) chr15:93338713-93340295  UCSC
Strand +
Parental Sequence NM_001168531.2
Parental seq. overlap 1373 bp
Parental seq. overlap (%) 68.8%
Genomic Region Intergenic
Retrocopy Summary ASB9P1, located on chr15:92795483-92797065, is a retrocopy of the parental gene ASB9. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ASB9
Full Name ankyrin repeat and SOCS box containing 9
Also known as -
Coordinate chrX:15243987-15270476
Strand -
Gene summary This gene encodes a member of the ankyrin repeat and suppressor of cytokine signaling (SOCS) box protein family. Members of this family can interact with the elongin B-C adapter complex via their SOCS box domain and further complex with the cullin and ring box proteins to form E3 ubiquitin ligase complexes. They may function to mediate the substrate-recognition of the E3 ubiquitin ligases. A transcribed pseudogene of this gene has been identified on chromosome 15. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2009]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ASB9P1
Bonobo Pan paniscus ASB9P1
Gorilla Gorilla gorilla ASB9P1
Orangutan Pongo abelii ASB9P1
Gibbon Nomascus leucogenys ASB9P1
Green monkey Chlorocebus sabaeus ASB9P1
Crab-eating macaque Macaca fascicularis ASB9P1
Rhesus Macaca mulatta ASB9P1
Golden snub-nosed monkey Rhinopithecus roxellana ASB9P1
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ASB9P1
CGGCCTCTGGCGGGCCTCCAGCCAGTTAGACCATTTGACTAGGACGTGTGCAGCTCAGCCAGCCACAGAACTGGAATTTTTCAGGAGCAGGGGGAGCATGGAGTTTGGACTTTGCTGAGCAACTGAAGTGGAGCGCAGAGCTTGCTCGCTTAGGAGAGGGCAGCATGGATGGCAAACAAGGGGGCATGGATGGGAGCAAGCCCACGGGGCCAAGAGACTCTCCTGACACCAGGCTTCTTTCAAACCCATTGATGGGTGATTCTGTGTCTGATTGGTCTCCTATGCCTGAAGCTGCAATCTACGGACATCAGCTGTCTCTGAGGAACCTCATCAGCCACGGGTGGCTTGTGAACATCATCATGGCAGATCATGTTTCCCCACTCCATGAAGCCTGTCTCAGAGGTCATCCCTCTCGTGTAAAGATTTTATTAAAGCATGGAGCTCAGGTGAATGGCGTGACAACAGACTGGCACACTCCACTGTTTAATGTTTGTATCAGCAGCAGCTGGGATTATGCTTCTGCAGCATGGAGCCAGCGTTCAACCTGAGAGTGATCTGGCATCCCCCGTCCATGAAGCTGCTAGGAGAGGCCACGTGGAGTGTGTCGACTCTCTTACAGCTTATAGGGGCAAAAATGACCATAACATCAGCCACGTGGGCACTTCACTGTATTTGGCTTGTGAAAACCAGCAGATAGCCTGTGTCAAGAAGCTTCTGGAGTCAGGAGCAGACCTGAACCCAGGGAGAGGTTCCCCACTTCATGCAGTGGCCTTCATGAAGGCCCTCATGAAGGATTCCCCACTTCATGCAGTGGCCAGGACAGCCAGTGAAGAGCTGGCCTGCCTGCTCATGGATTTTGGAGCAGACACCCAGGCCAAGAATGCTGAAGGCAAATGTCATGTGGAGCTGGTGCCTCCAGAGAGCCCTTTGATCCAGCTCTTCTTGGAGAGAGAAGGGCCCCCTTCTTTTGATGCAGTTATGCCTAGAAATCAGAAGGGCTTTGGAATCCAGCAGCATCATAAGATAACCAAAGTCGTCCTCCCAGAGGATCTGAAATGGTTTCTCCTACATCTTTGTATGTATCAATGGAATGGATTCACAAACAATGTGAAAACATTATTGAGTGTTGTAGCCACTAGAATTTTAAAATCAAGTTAGGTTTATAGAGTTTGACTAGTTTTTTCGATTAGATTTGTATTAGTTATAAATTTGTTCATAGAGTTTGACTAATTTTTTCGATTAGATTTGTATTTGTTAAACTCTGAAGCCAGAGTTTAAACACACTGCATACGTTTGTATGATTAGTTAGAAGGCATGAAGACTTTTTTCCCTGCTTGGAGACTGTCTAAAATAACAGCTATTGTTTTGCATATCTGGGTCAATCTGTCCAATTTCCCAGGGCAAGGATAGAGGAGTCAGATTCAAATACAGGTTTTCTGACGTTAACTTATGTGATGATTTGATCAAAGCAGGATTTTCCAGCATCACTATCCTTGTTCCATCTCTGCTATATGGG
>NM_001168531.2
GTACAGATGGCCAGGGCGTGCTGTGCATGTTACTGTGCAAGCAATTCAGCAGGGCTGCTGCAAAACCAGCTTTCTCAGCTCTGGGTGCTCGGGCTTGTCTCCATAACAAGCTACCATGTAACAAACGGATCTCAGCAGGGTGAACAACAGTTGCAGAAAGTGAGCTGTTTCCTTCACCCCCACCCTGCTCCCTTCACTCTCAAAAGTTACAAACTGAGTTTCCTTCCTGATAAACTCCAAGGCTTCCTCACTGATTGGTCTCAGTTTGGGAAAGGACGTGACATCAGCAACTTCGCAGACTTAGGGCTGGAGGGTTCTTGTGGCCTCTGGCGGGCCTCCAGCCAGTTAGACCATTTGACCAGAACGTGTGCAGCTCAGCCAGCCACAGAACTGGAATTTTTCAGGAGCAGGGGGAGCATGGAGTTTGGACTTTGCTGAGCAACTGAAGTGGAGCGCAGAGCTTGCTCGCTTAGGAGAGAGCATCATGGATGGCAAACAAGGGGGCATGGATGGGAGCAAGCCCGCGGGGCCAAGGGACTTTCCTGGCATCAGGCTTCTTTCAAACCCATTGATGGGCGATGCTGTGTCTGATTGGTCTCCTATGCATGAAGCTGCAATCCACGGACATCAGCTGTCTCTGAGGAACCTCATCAGCCAGGGGTGGGCTGTGAACATCATCACGGCAGATCATGTTTCCCCACTCCATGAAGCCTGTCTTGGAGGTCATCTCTCTTGTGTGAAGATTTTATTAAAGCATGGAGCTCAGGTGAATGGTGTGACAGCAGACTGGCACACTCCACTGTTTAATGCTTGTGTCAGCGGCAGCTGGGATTGTGTGAATTTGCTTCTGCAGCACGGAGCCAGCGTTCAACCTGAGAGTGATCTGGCATCCCCCATCCATGAAGCTGCTAGGAGAGGCCACGTGGAGTGTGTCAACTCTCTTATAGCTTATGGGGGCAACATTGACCATAAGATCAGCCACCTGGGCACTCCACTCTATTTGGCTTGTGAAAACCAACAGAGAGCCTGTGTCAAGAAGCTTCTGGAGTCAGGAGCGGACGTGAACCAAGGGAAAGGTCAGGATTCCCCACTTCATGCAGTGGCCAGGACAGCCAGTGAAGAGCTGGCCTGCCTGCTCATGGATTTTGGAGCGGACACCCAGGCCAAGAATGCTGAAGGCAAACGTCCTGTGGAGCTGGTGCCTCCAGAGAGCCCCTTGGCCCAGCTCTTCTTGGAGAGAGAAGGTGCTTCTTTGCCAAAACCTAAGCCCTAATCTGTTGACATCCCTTGGGGCTCTAGTAGAAGGGCCCCCTTCTTTGATGCAGTTATGCCGCCTTAGAATTCGGAAGTGTTTTGGAATCCAGCAGCATCATAAGATAACCAAACTCGTCCTCCCAGAGGATCTGAAACAGTTTCTCCTACATCTTTAAATGCATCTAGGGAATGGATTCACAAACGATGTGAAAACATTATTGAGTGTTGTAGCCACTAGAATTTTAAAATCAAGTTGGATTTATAGAGTTTGACTAGTTTTTTCGATTAGATTTGTATTTGTTATAAACTTGTTTATGGAGTTTGACTAATTTTTTCTATTCAATTTGTATTTGTTAAACTCAAGCCAGGGTTGAAAGACACTGCATACGTTTGTATTATTAGTTAGAAGGCATGAAGACTTTTTTCCCTGCATGGAGAGTGTCATAAGTTATTGTTTTGCATATCTACTGCATGCCAAGCACTTTCTGCATCATCTAATTTAGCCCTCACAGCCACTGGGTCAAGATGTCCAATTTTCCAGAGTAAGGATAGAGGAGTCAAATTCAAATACAGGTTTTCTGACATTAACTTATGTGATGACTTGATCGAGGCAGGCTTTTCCAGCATCACTGTCCTGGTTCCATCTCTGCTATATGGGAATGAAAATAAAGAAACATATTTCTTGGCTTGTCTAA

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