Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ACBD7P3
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr16:24606075-24607033  UCSC
Coordinates (T2T) chr16:24883002-24883959  UCSC
Coordinates (hg19) chr16:24617396-24618354  UCSC
Strand -
Parental Sequence NM_001039844.3
Parental seq. overlap 336 bp
Parental seq. overlap (%) 9.9%
Genomic Region Intergenic
Retrocopy Summary ACBD7P3, located on chr16:24606075-24607033, is a retrocopy of the parental gene ACBD7. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ACBD7
Full Name acyl-CoA binding domain containing 7
Also known as bA455B2.2
Coordinate chr10:15075475-15088776
Strand -
Gene summary Predicted to enable fatty-acyl-CoA binding activity and lipid binding activity. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ACBD7P3
Gorilla Gorilla gorilla ACBD7P3
Orangutan Pongo abelii ACBD7P3
Gibbon Nomascus leucogenys ACBD7P1
Green monkey Chlorocebus sabaeus ACBD7P2
Crab-eating macaque Macaca fascicularis ACBD7P3
Rhesus Macaca mulatta ACBD7P3
Baboon Papio anubis LOC101003652P3
Golden snub-nosed monkey Rhinopithecus roxellana ACBD7P3
Bonobo Pan paniscus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ACBD7P3
TACAGTGTATGAGAAAGTTTTCCTTTTGAAGCCTTGATAATGCTCTCATGACCTAACATTTAGAGGGAGAGAGGCACTGTTCACTCTAGGTATCATGTATATATTTGCTATTAGCAAGAATTGTAGTAACAGGAGTATGCTGAAACTACATAGTTCACTAAATTGTGCTTGCTTAAACCAGGTGTCCTTAAATGTTCTTTTAGAAAAGTATTTGAAGAACTGAAAAAACTCGATGGACTTTACAAACAAGCTATAATTGGAGACATTAATATTGAGTATCTGGGAATGCTGGACTTTAAAGGGCAAGGCCAAATGCGCAGCATGGACCCTCCAAAAAAGGTTGTCAAAGGAAGATGCAACGAGTGTCTCTATTTCTAAGGCAAAAGAGCCGATAGAAAAATAGGACATTTAGAATACAGTGTATGAGAAATTTTTCCAg
>NM_001039844.3
AGAGCACCGGACGACAACAGCAGCAGCAACAACGCGGCAGCCGCCACCATGGCCCTGCAGGCTGATTTTGACAGGGCTGCAGAAGATGTGAGGAAGCTGAAAGCAAGACCAGATGATGGAGAACTGAAAGAACTCTATGGGCTTTACAAACAAGCAATAGTTGGAGACAttaatattgCGTGTCCAGGAATGCTAGATTTAAAAGGCAAAGCCAAATGGGAAGCATGGAACCTCAAAAAAGGGTTGTCGACGGAAGATGCGACGAGTGCCTATATTTCTAAAGCAAAGGAGCTGATAGAAAAATACGGAATTTAGAATACAGCATATGAGGAATTTTTCCTTTTGAAGACTTCCAAATGCTATCATGACCTAACATTTAGAGGGAGAGGCATACTGTTAACTTGATGTATCATGTATATTTTTGCTATTAGCATGAGCTGTAGTACTTAGAAGTATACTGAAACTACATAGTTAACTCAATTGTACTTGCTTAAACCAGGTGTCTTTAAAAGTTCTTTTTaagaaaatgtggcacatatacaccatggaatactatggagccataaaaagggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactatcacaagatcagaaaaccaagcatgttctcactcataagtgggagttgaacaatgagaacacatggacacagggaagggaacatcacacactggggcctgtcggggactagggggttaggggagggataacattaggagacatacctgatgtaggtgaccggttgatgggtacagcaaaccaccatggcacatgtatacctatgtaacaaaactgcacgttctgcatatgtatcccagaacttaaagtataaaaaaaaaaaTTCTTTTAGAAAAGTAttttttatttttatagagttagggagtacagttgcagtttttgtttgtttgtttgttttttcttgaggagtctcactctgtcacccaggctggagtgcagtcgtgtgatctcggttcactgcaacctccgcctcctgggttcaagtgattctcttgcctcagcctcccgagtagctgggattacaggtgcttgccaccatggctggctaatttttgtatttttagtagagacggggttttgccatgttggccaggctggtctcgaactcctgacctcaggtgatctgcccaccttggcgctggggttgcaggtgtgagccaccacacctggtcacaggtgcagttttgttacatggatatattgtgtagtggggaaatctgggcttttagtgtaaccatcaccaaaatactgtacattgtacccaaaaggtaattgctcatccctcaccccctcccacctttccaagcctccagtgtctattattccacactccatgaccctgtatacaccctgtttaactcccacttataagtgaaaacatgtggtatttttttttgtttctgagggttctttaaaaatctttattttcttatttttttctgagttgtttcacttaagataatagcctccagttccacccacgttgctgcaaaagccgtaatttcattctctttatatggctgagtaatatcccctggtatacatatacaacgttttctttatcccatcatctgctgatggatacttaggttgattccatatctttgctcttgtgaattgtgctgcaatagatatacaagtgcaggtatcttttggatagaatgatttattttcctttaagaagatacccagtagtgggattgctgggtagaatggtagttctatttttagttccatgagaaatttccgtgctgtttttcatagaggttgtactaatttacattcccaccaatagtgtataagcattcccttttctccacatctgttgttttttgactttttaGAAAGTCTAGCCCTGGTAATATGTGTACAGATTTGAACAGCTGTTTGTTCTTTTGGCTCATCTGTTCTGTTACAATAAGTTAATGTTACTGGTGAAATAAAAACAGGTTATTAAGAATCAATGGCAAggctgagcgtggtggctcacgcctctaatctcagcactttgggaggccgaggtaggtggattactgaggtcagaagttcgagaccagcctgaccaacattgcaaaaccccatctctactaaaaatacaaaaattagccagccattggtggtgcacacctgtaattccagctacttgggaggctgaggcaggagaattgcttttacccaggagatggaggttgcagtgagccaagatcacaccactgcactccagcctgggcgacaaaacaagactccgtctcaaaaaaaaaaaaaaaaaTTACAAGTCTGTCCATAGCAGTTTAAAGAAATTTAAAAAGCCCCCATAGGAATATCTATTTTTCTTTAAATTTTTACATTTAAGACATTTAAGACAAAAAGGCAAACTAAAATGTATCTAGTGATAAACTGTACCACTACTGTACCCCATATGTTCAGTTCTATCTGAGTAAAAATAGAGTCTGGAATATAATATTGGCCCCCTACTCAGTCTTTCTGGATGGTACACAGGCTCTTTGAAAGAAGACAGTCTCATGTTAACAATTCAAAAAATTGTTTGAGATCCCTTAAGATAAATATCCCCCAAAACAGTGTACCTCTATTCCCTGCATAAAAATTTAGATTTGGAATGGTATGACCAGAGGAATAGATCCACTTCATGTTACTACAACAACAAAACTATCTAGGTCTGctagatgaatttccagggaattatgctgagcagaaaaagccagtccccaaatgtgacatgtataattccatttatataacattctttttcttttctttttttttttttttttttttgttgagacaggctgtcactctgttacccaggctggagcgcagtggcacgctctcggctcactgcaacctctgcctcccagggtcaagcaatcctcccatctcagcctccagagtagctgggactacaggtgcgtgcaaccatgcccagctaatttttgtatttttcatagagacagggtttcaccatgttgcccaggctggtctggaactcctgatctgaggtgatctacccaccttggccccccaaagtgctgagactataggcatgagccaccgcgtccagccaggattcttgaaagggaacatttatagacgcaaaggatggaatagtggttgccagggaggagggaggtgggtgtggctttaaaagggcagcaggagggatgatcctgcagtgatggaatgttctgtcttgattgtagcaacaccaatatgctgattgtgatattatactatagttttgcataacagttaccattaaaggaaattgggtaaaaggcta

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