Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name KIAA1191P5
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr16:52941991-52943012  UCSC
Coordinates (T2T) chr16:58739744-58740765  UCSC
Coordinates (hg19) chr16:52975903-52976924  UCSC
Strand +
Parental Sequence XM_024446134.1
Parental seq. overlap 619 bp
Parental seq. overlap (%) 22.2%
Genomic Region Intergenic
Retrocopy Summary KIAA1191P5, located on chr16:52941991-52943012, is a retrocopy of the parental gene KIAA1191. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name KIAA1191
Full Name KIAA1191
Also known as p33MONOX|p60MONOX
Coordinate chr5:176346062-176361865
Strand -
Gene summary Predicted to enable oxidoreductase activity. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes KIAA1191P6
Bonobo Pan paniscus KIAA1191P5
Gorilla Gorilla gorilla KIAA1191P6
Orangutan Pongo abelii KIAA1191P7
Gibbon Nomascus leucogenys KIAA1191P2
Green monkey Chlorocebus sabaeus KIAA1191P2
Baboon Papio anubis KIAA1191P6
Golden snub-nosed monkey Rhinopithecus roxellana KIAA1191P5
Mouse lemur Microcebus murinus KIAA1191P4
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>KIAA1191P5
ATGGGAAACTTTGCTAATTTGTAGCAGCTGGACAGTATTCCTCATTAACATCTGTCTGTCAGCATACATGTCACATCATTTTACTATAGCGGCAGAAACTCAGCTTCAAATTCAATACAGAAAAAAACACCTGGATCTCAGTCTTTCAATGGCTTTAAGGCGACCAGAAGTGCCTGTTCCCGAGTAGACCTCTGGGCAGGATGTCCCTGCCCTTTGGGACATACACTGGGCTTTCAGCTATGATGATGACTTCAAGGATTCTACACCCATGACTCCTCCTCCATCGGACATGGGCAGCATCCTCTGGAAGTCAGTGATTCCAGATCACAAGTATCAGCACCTTACCAAGGTAGAGGACCCACCCATGACACTATCACCGGCCATTGACAGTACAGAGAAGGTCCTGCTAGTGAAAACTAAAGCTACCCATTCATCAGAAATTATTTGATCACAAAACAGACACAGAAGAGCACTTAACATTTTGAGCAATAGGCAGGGCTACATACCCTCCAAGAGACTTACCCTCAAGAAGACCAAGCACCTTTGAGTGACAGAAGCGCTTCATGAACTAAAGCTATGGAGTGGGGAGATAACAAAAGAAAAGAAGCTCAGTGTATCAGCCCAGTCCATCCAAGCAGCAATCCCCACTCATCCCCTAAGCAGAAGCCCAGAGGCCAGTCCACTGTGGTTCTTTCACATCTTTACCTGGCCCAGATCCAGCACCATGTATTCTGAAAGTGGAGGTGAGGACAGAAACAGATCATATAAATGCAGCATCCTTGGACCAAGATCCCCAGAAGTATGATCTGGGAGGTTTTGCCAGCCAGGGCTACAGAGGAGCCCAGAAGCCCCCTCTAATAGAACTGATCCATGTCCAGATCACCTAAATAGCTGAAGATTAAGAAACCTTCAAGCTACCCAAGATAAACATCTCAGTGATGGAAGAGAAGAAATAACCACCAAGGACCCATAACCTCAAACCCTCTGACTTGAGTATACTCACATCCACTGCTTTCTAGAGC
>XM_024446134.1
GGCTTTATCTGCAGTGCTGCCTGCCCGCTGGGTGGTACTGCTACCTAGTGGGTCTTGGGGACCTTCGAAATCGCCGCCGCTCTCACAATGGCTTGGGTCCAGACTGCGCCACAGCCTCTCGGGAGACGTGGGCCCTCGGAACCTTTTTAGTGCCGGACTCCGGGCCGCAGGCAGTCCCGCGGCAGCAGGATCACAGAACCTCTGGATGGACTCTTCCTGGGAAGCTTTGCTACTTTGCAGCAGCTGGACCATGTTCCTCATTAACATCTGTCTGTCCGCTTAGTCATCACATCATTTCACTGTGGTGGCAGGGACTCAGCTCGGAATTCTGTATAGAAAAAGCACCTGGATCCCAGTCTTTCAATGGCTTCAAGACAACCAGAAGTGCCTGAACAGACCCAGGAAAGCATTCAGCATTTTGAGCGACAGGCAGGGCTGAGAGATGCTGGCTACACACCCCACAAGGGCCTCACCACCGAGGAGACCAAGTACCTTCGAGTGGCCGAAGCACTCCACAAACTAAAGTTACAGAGTGGAGAGGTAACAAAAGAAGAGAGGCAGCCTGCATCAGCCCAGTCCACCCCAAGCACCACTCCGCACTCTTCACCTAAGCAGAGGCCCAGGGGCTGGTTCACTTCTGGTTCTTCCACAGCCTTACCTGGCCCAAATCCTAGCACCATGGACTCTGGAAGTGGGGATAAGGACAGAAACTTGTCAGATAAGTGGAGCCTCTTTGGACCGAGATCCCTTCAGAAGTACGATTCTGGAAGTTTTGCCACCCAGGCCTACCGAGGAGCCCAGAAGCCCTCTCCATTGGAACTGATACGTGCCCAGGCCAACCGAATGGCTGAAGATCCAGCAGCCTTGAAGCCCCCCAAGATGGACATCCCAGTGATGGAAGGAAAGAAACAGCCACCACGGGCCCATAACCTCAAACCCCGTGACCTGAATGTGCTCACACCCACTGGCTTCTAGAGCCCTCTTTCCAGGGATTCTGGTAAAGGTGGTTTCTTGCATCCCACTCCCCTTTTACCTTGGCTTTGACATAGGAAAGGTATATTTAAAAACTTAATCAgctgggcgtggtggctcacgcctgtaatcccagcactttgggaggccaaggtaggtggatacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcgtggtggtgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcctgaacccaggaagcagatgttgtaccgagctgagatcatgccattacactccagcctgggcgacagaacgagacgccatcaataaataaataaataaagtaaagtaaaaaACCTATTAAATTGAGGCTAGAGCTGGAGATGTAATTGGTTTTTGAGAAACATTAGTATAAAGCTTGCCCTTGTTGTGTGGAAGAAGCCATTTTGTACTGCTTTAAAGTTAGACTAATATTCTCAGCACGGGTGTATGGGGACCTCATTACCTATTTTTTTCATCATTTACCCTAGGTAAGAACTTTGATCACTGCTTACTAGGTAAAGAATGTTTGTACTGTTCCAAAACCCAGGCTTCTTTATTCCTTTACCACTATCCATGTGAGCATTGACAAATCATGGCTTAGAGGTGCTCACTGACTCGCTAAGACGACTTTGGCCCTGTTGATGACTGGTGCTGTGCTCCAGCCTTATCAGTTAGGGGACCCAAGGTTTGTTTGGGACCTGGGTACAGGTAAAAGCCAGACTTGGCAGGGACCCCTCTTTCTAGGCTGAACCTTGAGTCCCCCTGCTTTTTGGCAGACCTAATGGATCACTGTCTTGCAGCTAGTTCTTCATGTGGGGCCTCTTAGGCCAGTGCCGGAGGAGGCATGCTCCTCTTTCTATGCCACAGAACAAACACTACTCTAGCAGAGCCTTTCTTGCACTTTAAAGTGAGATTAATTTAGCTGTAATTTGGTTAAAAACTTCCTAAGAGAGAAAATTAAGTCTACTGATTTGGTATAGGTAAATGGACATTAAACTTTTTTAAAGTAAAGGAGATGGTAGATACCGTTAGATTATAGTCTTGAGGTTCATGTGAAGCCAGTGGTGTTAACTTACTTTGATTTCCTTGTTCAGGTCAGGGCCTGGAACGCCTGTGCGGGGAGGTCACTCAATTCAAAATTTTCTGTATGAAAGCATTTTTCACCAAAATGAGCCTCATCCCTTTATGCAACACATAACCTTACTGAGGGAGGGAAATACAGAAGCCACCTTTTTATTTCTCTTCACTGTGTACAAGTTCACTTGTTGTCTTGAACACTGTCTCAAATACCTGCTTTTTGTTTTGGATAGTACCTTGTCTGTATAAGAAGCTGGCCTTTCCATAGAGAGGCCCTGGAGTCTAAAATTATGAGAACAATTAATTTATTTGTGTCTTCTATTATGATCTCGTTTTGACAATAAAAATCCTTACTACTTTCTCAAA

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