Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SYPL1P2
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr17:27351762-27352571  UCSC
Coordinates (T2T) chr17:28293187-28293996  UCSC
Coordinates (hg19) chr17:25678788-25679597  UCSC
Strand -
Parental Sequence NM_182715.4
Parental seq. overlap 688 bp
Parental seq. overlap (%) 32%
Genomic Region Intergenic
Retrocopy Summary SYPL1P2, located on chr17:27351762-27352571, is a retrocopy of the parental gene SYPL1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SYPL1
Full Name synaptophysin like 1
Also known as H-SP1|SYPL
Coordinate chr7:106090505-106112576
Strand -
Gene summary Predicted to be involved in chemical synaptic transmission. Located in extracellular exosome. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SYPL1P3
Bonobo Pan paniscus SYPL1P3
Orangutan Pongo abelii SYPL1P2
Gibbon Nomascus leucogenys SYPL1P3
Green monkey Chlorocebus sabaeus SYPL1P3
Crab-eating macaque Macaca fascicularis SYPL1P2
Rhesus Macaca mulatta SYPL1P3
Baboon Papio anubis SYPL1P2
Golden snub-nosed monkey Rhinopithecus roxellana SYPL1P3
Marmoset Callithrix jacchus SYPL1P4
Gorilla Gorilla gorilla Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SYPL1P2
GATCCACCTCAACCCTACTCAGGGAGCCGCTCAGCTTCCTCAAGGGCCTGGAGTAGATGGCTTCCATCTTCTCTTTTGCCACCTGTGGAGGTTTTTAAGAGCAAACAGAAATTCAAGTGAATTGTCCTCCTACAGTTACTGACGAAACTATTACAGCTACTTCTGATTATCCATTCAGGTTAAATCAGGCATCATTTCAGTCACCTCCAGGTATTAATGTGTATGATATAAATTGGAAAGTCAAGTCCTCCTAGGAGATGACTGTGCTTCTGCACAATTCCATTACATTTGCAGTCTCTGTCTTCCTGTACTGCATTGCTGTCGTGCTTTATGTTGGTTACAGGAACCTATATCAGGGTAGTCATAAACTTCCCATGATTGGCTTTGTCATTACTCTTGTTGCCATCTTTTGCGATTGGTGAGCACTTCAAAAGCTCGCTTGGGCAAAAGCTCTTGCAGATATTAAAATAACTACTGGTCAAAATATTGTTCAGGAACTTCTGCTTGTAAGAAATCATAATAATGTGTTATTTTGGCTCTGTGACCAGCATGGGATTCCTAAATGTATCTGTGATCTTTGTCTTTCTGAATATGATACTTTGGAGGGGAAATGCTTGGCGTGTGTACAAGTATGAGGAGACCAACTTACACAACCCATCAAATACTTATGCTCCTCATAGCCAAGGAGGTATTCCACCTCCTGCTGGAATGTAATTAAAGGGAGAAACACACTGTATGAAATATATGTCTATATCATGACTTGTTGCCAACATCTTGAGGCACATTATTTGTTTCCAATAAAAGTAATGT
>NM_182715.4
gcgccagccccgcctgcccttcctcgccaccgGGCTGCTCTGGTCTCGTCGGTCCCCTCCTCCGCCCCGTCGTCCTGACTCTCTCTCCCTCCTTTCCTCAGAGGATGTCCGGCTTCCAGATCAACCTCAACCCGCTCAAGGAGCCACTCGGCTTCATCAAGGTCCTCGAGTGGattgcttctatctttgcttttgcCACCTGTGGAGGTTTTAAGGGCCAAACAGAAATTCAAGTGAATTGTCCTCCTGCAGTTACTGAGAATAAAACTGTTACAGCTACTTTTGGTTATCCATTCAGGTTGAATGAGGCATCATTTCAGCCACCTCCAGGTGTAAACATATGTGATGTAAATTGGAAAGATTACGTCCTCATAGGCGATTACTCTTCTTCTGCACAATTCTATGTTACCTTTGCAGTCTTTGTGTTCCTGTACTGCATTGCTGCCCTTCTGCTTTATGTTGGCTACACGAGTCTGTATCTGGATAGTCGTAAACTTCCTATGATAGACTTTGTTGTTACACTTGTTGCCACTTTTTTGTGGTTGGTGAGCACTTCAGCCTGGGCTAAAGCTCTGACAGATATTAAAATAGCTACTGGTCACAATATTATTGATGAACTTCCGCCTTGTAAGAAGAAAGCAGTACTGTGTTACTTTGGCTCTGTGACCAGTATGGGATCCCTAAATGTATCTGTGATATTTGGCTTTCTAAATATGATACTCTGGGGAGGAAATGCTTGGTTTGTGTACAAGGAGACCAGCCTACACAGTCCATCAAATACATCTGCCCCTCATAGCCAAGGAGGTATTCCACCTCCTACCGGAATATAATTAAAGGGAGAAATACACTGTATGAAGTATATGTTGATACTATGACATGTTGCCAACACCTTGAGAAGCATTATTTGTTTCTAATAAAAGTAATGGCTTTGTCAATATATTGGTGGGTTTAAAACTTTGCTGCTTTTTTACATAAAGCCTGTGCCTTTCCTAGAAAGTTAAGATGTAAATGTATTCTCACATGTAAATTTGAAAGTTCAGGGGTCTATTATGAAATGATACACATTTTTAAATGAACCATAATTTTTTTCACTAAGCTGTTTGCCTTCCAAAGTGTTTACACCTTAAGCCTTAACATGTATCTTCATTCAGAAAACAGTTATATTGTCATACCATAGTAGGAAGAAAAACCTTTATTTGGAATATACACTACTGTAAGTTTGTACAGATCATATACCTACCACCTGTCTTTGCTTAAAGAGCCTTGATTACATAAATATGTAGGAAAAAACATATTGAGTTCAAAATTTATATCTAACATTGTTTATGTTATGATTTTTTTTTAATTGCAAAGACTAGGTGTATATTTTTTTCTGTTTTTCTAAATGACCCGTGGTACTTAATAGGTGTACTAAAATTGTGTTGGGAGCAGGGATTTGGAAATTTCTGAGAGATGTGTAGTTAATTTAGTAATTCTGTTTCATGAGATATGATCTGTTATGCTAGTGGTTTAATAGGCTTGCTATGTAAGTAGAACGTGGCTCAACTAGATATCTTTATATGTATGGGCATTACTCTTAGTGATATTTGTTTCCTGTCCTTTGTTGCTCATGCTGTTTAAGTGCAGGCTGAGACCCAGCCTCTTTGTAAGTACAGTAAAATAATCCACCGTTTTTTACAGACCCTAGTCAAAGGGTTAAAAAAATTAAGATTGCTTTCCATGTTTGAAATTTACCATTGAGAGTCAATGAAGTTGCTATTTTGAGTTTAGCATTGATATTGTGAAAATAAGTGCAATTTGGATTTCATGTTTCTTAATATTCATTCTTGTTTCACAAATGAATGATTAAGGAATTATGCATCATAAAGGAACCTAAGTGAGGTATATGATGAGTGTATTGTCTTTGCACACACATATAGGTATATTCTGAATACAAGCTTATTCACATTTTGCTTCCTAATCTTTTTGTTGTACAGGGATTCAGGTTTCTTATTCTTACAACATGATTGTTTATATGTGAAGCACATCTTGCTGTTGCCTTATTTTTGATGCTTTTATTCATGACAAGAATTGTCAATATAAGAATGTATATCTTTTTTGCAACCAATTTAATAAAGGAGTTGAAAGAAA

Publications

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