Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SLC35G3
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr17:35193227-35194422  UCSC
Coordinates (T2T) chr17:36141162-36142357  UCSC
Coordinates (hg19) chr17:33520246-33521441  UCSC
Strand -
Parental Sequence NM_001102614.1_2
Parental seq. overlap 1155 bp
Parental seq. overlap (%) 96.6%
Genomic Region Intergenic
Retrocopy Summary SLC35G3, located on chr17:35193227-35194422, is a retrocopy of the parental gene SLC35G6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SLC35G6
Full Name solute carrier family 35 member G6
Also known as AMAC1L3|TMEM21B
Coordinate chr17:7481402-7483064
Strand +
Gene summary Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SLC35G6P2
Bonobo Pan paniscus SLC35G6P2
Gorilla Gorilla gorilla SLC35G6P1
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SLC35G3
CTCAGGAGAGTTCCAGGGAAGAATCCCACCCCCACTCCAATGAGGTCACAATGGCTGGAGCTCTGAGGGGCCCAGGCTCCCTGAGCCAGGAGGAGAGGAGAAAGTCCAAGGAAAGATGGCTGGCAGTCACCCCTATTTCAACCAGCCTGACTCCACACACCCATCGCCGCCCTCCGCTCCACCCAGCCTCCGCTGGTACCAGCGCTGCCAGCCCTCTGATGCCACCAGTGGCCTGCTGGTGGCCCTGCTGGGTGGGGGCCTGCCTGCTGGCTTCGTGGGCCCCCTTTCTCGTATGGCTTACCAGGCTTCCAACCTGCCCTCGCTGGAGCTGCTCATCTGGCGATGCCTCTTCCACCTCCCTATTGCCCTGCTACTTAAACTGCGTGGCGACCCCCTTCTGGGAACTCCTGACATCCGAAGCCGGGCCTTCTTCTGTGCCCTGCTCAACATCCTCAGCATTGGATGTGCCTACAGTGCGGTTCAGGTGGTGCCCGCTGGCAACGCTGCCACTGTTCGCAAAGGTTCTTCCACCGTCTGCTCCGCCGTCCTCACTCTCTGCCTTGAGAGCCAGGGTCTCAGTGGCTACGACTGGTGTGGACTGTTGGGCTGCATCCTAGGACTAATCATCATTGTGGGACCTGGACTCTGGACACTACAGGAGGGGACCACGGGTGTCTACACCGCCCTGGGCTATGTGGAGGCTTTCCTGGGAGGCCTGGCGCTGTCCCTGAGGCTTCTGGTCTATCGTTCTCTGCACTTTCCCCCCTGCCTCCCAACAGTGGCCTTCCTATCTGGCTTGGTGGGGCTGCTGGGCTCTGTGCCAGGCCTCTTTGTGCTGCAGGCCCCCGTGTTGCCCAGTGACCTCCTGAGTTGGAGTTGTGTGGGGGCAGTGGGGATCCTCGCCTTGGTCTCCTTCACATGTGTGGGCTATGCGGTCACCAAGGCCCACCCTGCCCTGGTGTGCGCTGTCCTACATTCCGAGGTGGTTGTGGCCCTTATACTGCAGTATTATATGCTCCATGAGACTGTGGCACCTTCTGACATCGTGGCGGCAGGGGTTGTGCTGGGCAGCATTGCCATCATTACAGCCCAGAACCTCAGCTGTGAGAGGACAGGGAGGGTGGAGGAGTGAGATAGAACTTGGGAGCCCGGGGGTTGGGAGGGACAGGGATAAATAAAGGCAAAGACTGAAGACA
>NM_001102614.1_2
CTCAGGAGAGTTCCAGGGAAGAACCCCACCCCCACTCCAACCATGTCACAATGGCTGGAGCTCTGAGGGGCCCAGGCTCCCTGAGCCAGGAGGAGAGGAGAAAGTCCAAGGAAAGATGGCTGGCAGTCACCCCTACTTGAACCCGCCTGACTCCACACACCCATCGCCGCCCTCCGCTCCACCCAGCCTCCGCTGGCACCAGTGCTGCCAGCCCTCTGATGCCACCAATGGCCTGCTGGTGGCCCTGCTGGGTGGGGGCCTGCCTGCTGGCTTCGTGGGCCCCCTTTCTCATATGGCTTACCAGGCTTCCAACCTGCCCTCGCTGGAGCTGCTCATCTGTCGATGCCTCTTCCACCTCCCTATTGCCCTGCTACTTAAACTGCGTGGCGACCCCCTTCTGGGACCTCCTGACATCCGAGGCCGGGCCTACTTCTATGCCCTGCTCAACGTCCTCAGCATTGGATGTGCCTACAGTGCGGTTCAGGTGGTGCCCGCTGGCAACGCTGCCACTGTTCGCAAAGGTTCTTCCACCGTCTGCTCCGCCGTCCTCACCCTCTGCCTTGAGAGCCAGGGTCTCAGTGGCTACGACTGGTGTGGACTGTTGGGCAGCATCCTAGGACTAATCATCATTGTGGGACCTGGACTCTGGACACTACAGGAGGGGATCACGGGTGTCTACACCGCCCTGGGCTATGGGCAGGCTTTCGTGGGAGGACTGGCGCTGTCCCTGGGGCTTCTGGTCTATCGTTCTCTGCACTTTCCCTCCTGCCTCCCAACAGTGGCCTTCCTATCTGGCTTGGTGGGGCTGCTGGGCTCTGTGCCAGGCCTCTTTGTGCTGCAGCCCCCCGTGTTGCCCAGTGATCTCCCGAGTTGGAGTTGTGTGGGGGCAGTGGGGATCCTCGCCTTGGTCTCCTTCACATGTGTGAGCTATGCGGTCACCAAGGCCCACCCTGCCCTGGTGTGCGCTGTCCTGCATTCCGAGGTGGTGGTGGCCCTTATACTGCAGTATTATATGCTCCATGAGACTGTGGCACCTTCTGACATCGTGGGGGCAGGGGTTGTGCTGGGCAGCATTGCCATCATCACAGCCTGGAACCTCAGCTGTGAGAGGGAAGGGAAGGTGGAGGAGTGAGATAGAACTTGGGAGCCCGGGGGTTGGGAGGGACAGGGATAAATAGAGGCAAAGACTGAAGAC

Publications

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