Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name RPL7L1P5
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr17:44364964-44365783  UCSC
Coordinates (T2T) chr17:45218989-45219808  UCSC
Coordinates (hg19) chr17:42442332-42443151  UCSC
Strand -
Parental Sequence NM_198486.5
Parental seq. overlap 765 bp
Parental seq. overlap (%) 20%
Genomic Region Intergenic
Retrocopy Summary RPL7L1P5, located on chr17:44364964-44365783, is a retrocopy of the parental gene RPL7L1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL7L1
Full Name ribosomal protein L7 like 1
Also known as dJ475N16.4
Coordinate chr6:42879616-42889900
Strand +
Gene summary Enables RNA binding activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within blastocyst formation. Predicted to be located in nucleolus. Predicted to be part of cytosolic large ribosomal subunit. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes RPL7L1P27
Bonobo Pan paniscus RPL7L1P28
Gorilla Gorilla gorilla RPL7L1P9
Orangutan Pongo abelii RPL7L1P26
Gibbon Nomascus leucogenys RPL7L1P24
Green monkey Chlorocebus sabaeus RPL7L1P19
Crab-eating macaque Macaca fascicularis RPL7L1P19
Rhesus Macaca mulatta RPL7L1P20
Baboon Papio anubis RPL7L1P24
Golden snub-nosed monkey Rhinopithecus roxellana RPL7L1P27
Marmoset Callithrix jacchus RPL7L1P13
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL7L1P5
TGATCGGTAGCTGCAACACTAGAAAAATGGCGAGCAAGAGCAAAGAAAAATCCCTTTGGTTCTAGAAAATCTCCTGAAAAAAAGGCTTACCAAGCCCTCAAAGCCACCCAGGCAAAGCAGGCACTTTTGTCAAAGAAAGAGCAGAGGAAAGGAAAAGGGCTCAGGTTTAAGCAACTGGAATCATTCCTACATGATTCCTGATGGCAGAAATGTGACAAAGTGCATCTCAGACAACTAGAAGTGAAACATCATGCCTTGGAATTGCCAGATAAACATTCCTTGGCCTTTGTTGTACACATCGAAAGAATTGATGGCGTGAGTTTACTGGTGCAGAGAACCATTGTAAGACTTTGCCTAAAGAAAATTTTTAGTGGTGTCTTTGTAAAAGTCACCCCCCAGAACCTAAAAATGCTGCGTATGGTGGAACCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTCCAGGAACTCATTTTGAAACATGGACAAGCCAAGGTCAGGAATAAGGAATAAGACCATTCCTCTGACAGACAACACAGTGATTGAGAAGCACCTGGGGAAGTTTGGTGTCGTTTGCTTGGAAGACCTCAGTCATGAAATTGCCGTCCCAGGGAAGCATTTCCAGGAGGTCTCATGGTTGTTACGCCCTTTCTACCTCTCAGTGGCCCGTCATGCTACCAAAAATACAGTGGGCTTCCTCAAGGAGATGGGCACACCTGGCTATCAGGGTGAACGCATCAGTCAGCTCATCCGCCAGCTGAACTAGACCCAGGTGCCAAACTGCAGTAAATTTTTATTAATGAAGTGGAAGCATGG
>NM_198486.5
GTAGCTAGGAGCGGACGCCATAGGTGCATTGTGGGAAGCACTTTGCTGTCCACAGCCAGGCCGCTTGTGATGAAACTGTAACTTACAAGAAAAGGGCTGGGTTTTGAAAATAACACAGGCTCTAAAAACCCTAAGAAGCGGTGCAACTTTTGGCAGGAATCGGGGTTAGCGGGACCTCAAGGGCTCACTGCGGCTAAGTGAACGCTGACTGGTCCTCCAGCGTGAGCTAGAACAGACGTCTCTATGGTCAAGTAAACAGAGCGTGTGCTGTCTTCCCCATGTGGTGGGGTTGCGCATGATCAGTAGCTGCACCACTAGAAAGATGGCGGAGCAAGAGCAAAGAAAAATCCCTTTGGTTCCAGAAAATCTCCTGAAAAAGAGGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAAAGCAGGCACTTTTGGCAAAGAAGGAGCAGAAGAAAGGAAAAGGGCTCAGGTTTAAGCGACTGGAATCATTCCTACATGATTCCTGGCGGCAGAAACGTGACAAGGTGCGTCTCAGACGACTAGAAGTGAAACCTCATGCCTTGGAATTGCCAGATAAACATTCCTTGGCCTTTGTTGTACGCATCGAAAGGATTGACGGCGTGAGTTTACTGGTGCAGAGAACCATTGCAAGACTTCGCCTAAAGAAAATTTTTAGTGGTGTCTTTGTAAAAGTCACCCCCCAGAATCTAAAAATGCTGCGTATAGTGGAACCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTCCGAGAACTCATTTTGAAACGTGGACAAGCCAAGGTCAAGAATAAGACCATCCCTCTGACAGACAATACAGTGATTGAGGAGCACCTGGGGAAGTTTGGCGTCATTTGCTTGGAAGACCTCATTCATGAAATTGCCTTCCCAGGGAAGCATTTCCAGGAGATCTCATGGTTCTTGTGCCCTTTCCACCTCTCAGTGGCCCGTCATGCTACCAAAAATAGAGTGGGCTTCCTCAAGGAGATGGGCACACCTGGCTATCGGGGTGAACGCATCAATCAGCTCATCCGTCAGCTGAACTAGACCCAGGTGCCAAACTGCGGTAAATTTTTTATCAGTGAAGTGGAAGCATGTGTTTTGTTTTGGAAATTTTTATCAAGTATCTTCAGAGAAGATTATTTCCTGCTTTATCTTCAGAAACTGGAAAGGGTCAAAGAAAAGACAGTAGCTggccggtcgtggtggctcatgcctgtaatcccaacacttagggaggctgaggtgggcagatcacctgaggttgggagttcgagaccagcctgaccaacatggagaaatgccatctctactaaaaatacaaaaattagccgggcatggtggcacgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggtggaagttgcagtgagctgagatcacgccattgcactccagcctgggcaacaagcgaaactctgtctcaaaaaaaaagaaaaGACAGTAGCATATGTTCATGTCAAGCACCTCTCATCACAGTCGAGTTCCAAGGAAAAATTCCAGTGTTTTCTGCATTGGGTGCTGTGTCATCTGAAATCGGCACATTCCATGGAGGAAGGAGTCCTGCTTTGTTGCATGTATCCTAGGGTTTAATGTTGGTAAATGAGTCACTCTAGCATTTGTAGAAGGCTCCCTGAGACTCCTGCAGCAGTCGACCAAGCCCAAGGACATAATTGAATCTGGAGAGTCCTGGGGCCTTGTTTTGAAAAAGACTTGAAATACACATAGGAAGAAAGGCATAAAAATAAATGTTCACTTGTCTCTGCTGTGAGTATGTGTTCCAACTTTTCAGTGATGGCTTTGAGAATTCTCAAACTTGACTGGCTCTAAGTGTATCTGGTGGCTTTTGTATCGTAACCTGAAACTGGCTTAGTACTTTTTCCTAAAAGCTCAGGATTTGAGAATGAggaccccttcgccaggaaaacatgtatacactcaaaattttgcttgcagttctagggtgtttagacccTTCTCAGATACCTGTGCATCTTATGGGttttgtttttctctttgagacagtctcaccctgttgcccaggctggagcgcagtggcatgatctcagctcattgcagcctccacctcctgggttcaagtgattctgcctcagccccttgatcagctgggattacatgcatgtaccaccacacccagctaattcttgtatttttagtagagatggagacagagtttcaccatgtaggccaggctagtctcaaactcctgacctcaagtgatccacaagcctgggcctcccaaagtgctgggattacaggcatgagcaactgcgcccagcTCTTGTGTACCTTATGTGAGGAAGTCCTGCTCAATCAGGATCGGTCACGCAGGCCCTGATCTTGCTACTCTGGTTCCATGTCCTATGGAAGACCAAAGTTTACCAAGATAGATTTTTCCCTTCATAGTGGCAGATAGTGTTAACCCCTGCACCATCTGTAACTCAGAAATCCCCACCATTTCTTCCCCTGGGCTTCAGAATAGAATTGCCTGGTTTCTCTGATGATCAGCATGGTTCCTTAAAACCCAAATCAGCAAGGAATGAACAATTTTGTTTGGCATGGATGAAATTAGCACTGTTTGGCTCGTTAGGCCCCAGGCAGGCAGGCACCTTAATTTTTTCCTTGCATATTCTAGTCTTCAGAAGCATTGCCTTTTGTCCTACTGGTAGTGACATAGACCAATAACAGGGCATCTGGGGATTTTAATCCTGAAAACAGTGAGTCTGATACTGCTTGTGTTTTTCATCAGTGTCCACCCCAAGTGGGTCTTCCTGCTATTCTCTTCACTTAGTTGCCCCTCACTTGCCATCTGAGCAATTGGCAAGGATGTGCCAGGCCTAGGTTAAACTTGGAAACATGCTTGACCATTCTATTCCCTGGTCCTTTAAGATCAGTTTGGCTGCAATTTTGGCTCCTTGGACCCTCAAGCATAGCTGGTAAATCAAGTTAGAGATGTAACTGCCTTAAAACATGCCAGCTTAggctgggcacggtggctcacacctgtaatctcaacacttcaggaggctgaggcaggcagatcacttgaggtcaggagttcgagaccagcctgaccaacatggagaaattctgtccctactgaaaatacaaaattagccggatgtggtggtgcatgcctgtaatcccagctacttgggaggctgaggcaagagaattgcttgaacccagggaggcagaggttgcagtgagccgagatcacaccattgcactccaccttgggcaacaaaagcaaaactctgtctcaaaaaaaaaaaaaaaaaaaGTGCCAGCGTATGAGGTAATTAGATTGGTTCTCTCCAGAGGTAACCTGCCAAGAAGAGATGCTATAGATGTTACTCCTATACTGTAAAACATTGTGAAATCAGATTACTTTAAAATGATGTATTACAAAGTTATGCAAAAAAGCAGTTGTGACTATGGAAGCCCAAGGCTTATATCCCAGCTCTGTCTTACACTAAATATGGGTACAGTgtttccactctgtccataaaatgggagctaatattctccaacctgtgtgcctgacatgatggttaaagggattaaacaaaacaatagtttgtaatttattctgtcagagcaaactgctggtaaataaaagggactaAGTTGACGAAAAATAAATTTTAAAAAACCTAATAAAACAAGTTTGTAATTTATAATTGTATACAAATAAAAGATGTTACAAAAATTGCGCACTTA

Publications

PMID - Link Title