Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name MAPK1IP1LP3
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr17:53353045-53353832  UCSC
Coordinates (T2T) chr17:54228234-54229021  UCSC
Coordinates (hg19) chr17:51430406-51431193  UCSC
Strand -
Parental Sequence NM_144578.4
Parental seq. overlap 654 bp
Parental seq. overlap (%) 10.1%
Genomic Region Intergenic
Retrocopy Summary MAPK1IP1LP3, located on chr17:53353045-53353832, is a retrocopy of the parental gene MAPK1IP1L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MAPK1IP1L
Full Name mitogen-activated protein kinase 1 interacting protein 1 like
Also known as C14orf32|MISS|c14_5346
Coordinate chr14:55051647-55070194
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes MAPK1IP1LP3
Bonobo Pan paniscus MAPK1IP1LP3
Gorilla Gorilla gorilla MAPK1IP1LP1
Orangutan Pongo abelii MAPK1IP1LP3
Gibbon Nomascus leucogenys MAPK1IP1LP2
Green monkey Chlorocebus sabaeus MAPK1IP1LP3
Golden snub-nosed monkey Rhinopithecus roxellana MAPK1IP1LP4
Mouse lemur Microcebus murinus MAPK1IP1LP1
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MAPK1IP1LP3
GCCCCACAAGACCATATTCTACATCATATATGTCCCTTCCAAAGGTACCTAGACTACAGGGTGAACCCACAGATCGAGCTCTAGCTGCTCTTTAGGTCCATAGGGATCCATGTCTTATGAATCTTGACTACCAGGAATGGGAGGGCATTATCTCACCCCTAATATGCCATATCCCTCTCCAGGGCCACATCCTGTTCCTCCTCCTACCCAAGCACCAGGGCCAGCACCACCTGTTTCACAGGATACTGTTTTGCCAGGAGCCTGTAGATTACCCTCACCATATTCTGACCATGCAGAAGCATATCCTACACCAGGACTCTATCTTATTCCCAATAATCTTTTCCAAGTGCCCCCAGGACCTTCTAGATCTCCACCGATGCCTGGTGGCCCTCATTCTTACTATTAGGTTAACAATAGATGAAGACATGATCTTTGCTTTTTTAACTAGATGTATATAAGCACAAATGCATATATAAAAATTGCTGGCTTCACTCTTCTTAAAGGGTATTCCATAAAGAACAACCCTTGTACCTCTCAGAGAAGATACCTGTCTCTTATACTTGGATATGTAGTATATTTGATGGATATAATCAGATAATGTAGAAGTAAATAATTCAAATGTGATTTTTATTTAGTTTTCATTGAAAGTTATACATCATTAAGTATTGAATAGCTCTTTTATACAAATTGTTTAAATTATAAAACTATGCACAAATCTAAACTGATGTGGATTATTGTTACAAACTGAAACTTTATTGGCAAATTATTTCAAGTATTTTTGTATAATT
>NM_144578.4
GCTTCCTGTTCCGGCGCCAGGAGGAGCCGCGCgctgctggtgctgttgccgccgctgctctagctgcCGTCAGTCAGGCTGCGCCCGCGTCTTCAGGGCCCAGTCCCTCGGACCCATCGCCGCTTCTAGACCCTACTGCGGTCTCGGATATTGCCGGGAAAATGTCTGATGAATTTTCGTTGGCAGATGCACTACCTGAACACTCCCCTGCCAAAACCTCTGCTGTGAGCAATACAAAACCTGGCCAACCTCCTCAAGGCTGGCCAGGCTCCAACCCTTGGAATAATCCGAGTGCTCCATCTTCAGTGCCATCTGGACTCCCACCAAGTGCAACACCCTCCACTGTGCCTTTTGGACCAGCACCAACAGGAATGTATCCCTCCGTGCCTCCCACCGGACCACCTCCAGGACCCCCAGCACCCTTTCCTCCTTCCGGACCATCATGTCCCCCACCTGGTGGTCCTTATCCAGCCCCAACTGTGCCGGGCCCTGGCCCCACAGGGCCATATCCTACACCAAATATGCCCTTTCCAGAGCTACCCAGACCATATGGTGCACCCACAGATCCAGCTGCAGCTGGTCCTTTAGGTCCATGGGGATCCATGTCTTCTGGACCTTGGGCGCCAGGAATGGGAGGGCAGTATCCTACCCCTAATATGCCATATCCATCTCCAGGCCCATATCCCGCTCCTCCTCCTCCCCAAGCCCCTGGGGCAGCACCACCTGTTCCATGGGGCACCGTTCCACCAGGAGCCTGGGGACCACCAGCACCATATCCTGCCCCTACAGGATCGTATCCCACACCAGGACTCTATCCTACTCCCAGTAATCCTTTCCAAGTGCCTTCAGGACCTTCTGGTGCTCCACCAATGCCTGGTGGCCCCCATTCTTACCATTAAGTTAACAATGGACGAAGAGATGACGCTTTGCTTTTTGAAGTACATGTATATGCACATGAATGCATATATAAAAATTGCTGGTTTCACTATTAGAGGGCATTCATGAAAGAACAACTCTTGCACCTCTCAGAGAAGATAACTGCCTCTTGTACTTGGATGCGTAGTACATCATATGTATACAATCAGATAAAAGCATAGAAGTAAATCATTCGGATGTGATTTTTATTTGGTTTTCATGGAAAGTTAAAGTGATAAAGTATATTGAATAGTTCTTTGACAGAATTTGTTTAAACTATGAAACTACACACTTAAAAATCTAAGATGTGGATTATTGTTAGAATCTGCAACTTCATTGGCAAATTATTTCAAGTATTTTTCTATAATCACTTTCCCCTTCTAAATAAATAAACTTCGAGAATAACCCATCATAATCCAAACAAATGATGCCTCAACATTTTGAGCTGCTCTGTCGGACAAATAAACCTGGTCCTCTTGAGGTTATATTTTGGATATACATTTTTAAACTGTCAGTAATTATTGTCAGATGTGGAGTTCAATAGCCAGCCAGTGTTCATTTTTATCCTTGAGCTTTTAGTAAAAACTTCCTGGTTTTATTTTTAGTCATTGGGTCATACAGCACTAAAGTCTGCTATTTATGGAAACTAACTTTTTTGTTTTTAATCCAGGCCAACATGTATGTAAATTAAATTTTTAGATAATTGATTATCTCTTTGTACTACTTGAGATTTGATTATGAGATGTGCATATTGCTTTGGGAAGAGCTCGAGGAAGGAAATAATTCTCTCCTTTGTTTTGAACCTCAAACTAGATAAACCCTAGGAATTGCTTAACTGCAACAAGTAATTTTCATTCCCACAAAAACCTGAGGCAGCTCTTTTGCCCAGAGCGTTCCCTGTAGCCACCCCCACCCCACTTGCCCTTGGTTCTTTAGAAGGAGCACACACATCCCTTGATTCCTCCCTGATGTGGTAAACTGGCACACTCCAGGGGTCTAAAACATAAAACAGTTGTGTTTAGGGAACCTTAAGTCATGCAGACATGACTGTTCTCTTTGTACAAGTGTGAATCAAAATATGTATCTCTTTTTCAGAGTCTGGTTAAGCTATGTCATTGTCTACTGCATAGTTTCCTGAGTCTGTTTGTAAAGTGCTTATGGCTAACAGTTCAGTTCTGTATTTGTTGACAGGTAAATAAGTGGAGTTGAGTGCCATCTTTGAAAAAATTACCCTCTAGCTCTAACACTGAAAATAATAATAAATTGTAGATCTCTGCAACTAAGTTTAAAGCAGTGTGACTGTGTTGCTTAAATATCAAGTATTGTTTATAACCACCAAAAAAAAAAAGCCCTGGTAGTTTTTTGGCACCTTATGTTTAAATCAGATTCTTAGATTTGGAGTAGACCTGACCTTGTTATTTATTAGATAACATTTTGAATGTATCCATTGGATTTCTAAAATGTATTGTGAATTTCTCAGACAAACAGGATTTATGCTGGAGCTCTGTTTTGCTTAGAAATAAAATATTTAGTAGTTTATTTCTGCTCTAATTAAAATGTCAAGAATGCCAAATGCTGCCAGTTTTTTGGTTTGATAGCTACCTCCTTCTAAGAAAGCAAAATGGTTACCTTTGAGAGGAACATTCAGTGTTTAATCATCCCTTATGTTAACTAGATGATAGATTCAAGCTTTTAGAAATGAGAAAGTAGAAACTAATTTGTTAAGATATTTTCAGACTGCGGAATGTTGTTAGCTTTTTCTTTCACTTCTCTTCAAGGACAGGTGTTAGCTGTCTACAATACTGTTGAACTCTGTTGTCAAAGTAGCCCCCTTAGTCTACAAGGCAGGTAGCCTTGGCTTGAATTATCAATATCAAAATGTCAGTTAACCATGGAGGGATAAAGTAATGTGAAAAGTGAGATGGCTGCAAAGATAGCTCTCCTTACAGTTATTTTGGCTGTCCTACATTGGGATAAGCTGACAAATTAGCAGTATTTAGTTTAACACTGGAGCAAATATAATTTGAGTAGGAAGAAGAGATAGCAGGTTTGGGAATCTATAATTATGAAGTCCATTGATTTTGGGAGAAAATCTGTTGCTAAAGGATTTGAAGGGCCATGAACACAATTTGGGATTATTACTCCCTATAAGTATAATAATTTTGCTAGTGACCCATACTGTCCAGTGTGCCCTAAATCATACTGCTATTGTACTCCCTTTGTTTTCAAGGACTTTGCAACTGGTATTTGGGGGAGAtttttttttttttttgagacggagtctcgctctgtcgcccatgctggagtgcagtggtgctatcttggttcactgcaagctccatctcccaggttcacaccattctcctgcctcagcctcccaagcagctgggactacaggtgcccgccaccatgcccggctaatttttttttttttttttttttagtagagatggggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatctgcccgccttggcttcccaaagtgctgggattacaggcgtgagccaccacgtccggccGAtttttttttttttttttAATGTAAGAATGGAGATAAAAGGGATAATATAATTTGCTTTTATATTGTTATTTTTGTAAAGCATCTTTTCTTCAATTCTTGTTGGCATTCTGGGCCAAAATATTTCAGGTTGGTTCGGTGTGGAGTTAAGAAAAGCAGGCGTTTTAGTGGAGAAATGGGGAACAGCATCAAGAAAGGCttttttccttttttcttttttttttggagacagagtcttgccctgtcacccaggctggagtgcaatggcgtgatcttggctcgctgcaacctctgcctccaggttcaaacgattcttctgcctcagcctcccaagtagctgggattacaggtgcccgccaccacacccatttttgtatttttagtagagacgggggtttcaccatgttggccagggtggtctgaaactcctgacctcgtgatccgcctgcctcagcctcccaaagtgctgagattacaggcgtgagccaccatgcgtgaccTTTTTTTCTTTTTAAAAGGGAACAATGTTGCTTTCAAAACAAGACATGCTAGGCTGAAACTGATTTATGGAAAAGACTGCTTGTTAGCAAGTATATTTGGTCTTGAGGGGGATACAGATTATAGAATATGCTGACATTTGGGCTTCAGAGGAAGAATTTTCAAATCTAATGGAAATAGTTGAGGTGTTCAGGAATGCTGTTTCTTGGAGTTGGAAGCTTAGGTTTTGAAATGTTGAAACCAAAAAGACAAAAATTAAAACATAGACCTTAGGTCGTCATTCACACCCGGTTCTCAAGAATCAAGTGGAGCACTTCAAAGACCTTGGCTTGTCTGTCCCATCCTGCCACTTTCTCATCTTTTCATGCTTTTGAAGACACCATTTACAGCTCTGACTCAGCCCTATTTTGTGTAAAGTAATATATTGATTATTCAGAAATAGACAATACATTTTTTAATTACCCAAGGACTGACTGTTTTGTGCATTTTACTGTTGGTTGTCTTCAGTAGAGAATAGTAATAGGGCAGAGAAAAGTATATATTTTGCCTCAGTCAGTCCCACCACCACAATGGACTATTGGGATATTTTCTAAAAAACCAATCAATTTGCCCATGATTACCTCACAAATAATTAGTGCTACCTGGGGTACTCTCAAATATACAGCTTTTGAAACTGTAGATGAAAAAAGCTCTACTCAGAGTTTTTGTCAAGACTGTGCCTGGGTTGAATATCAGTCAATTGCCTACACTTCTAAACAATAAGTGCCAATGTCTCAATTTTCTCACCCTGAATGATAGAAGCTAGCTTTATCAAATGCCAAGGTTAGAAAGCCTGGAAATAAAACTTAAGCACAGACATTCAAGTTTTTGAAAAGCATAAGCCTAAATTCAGATAAATCACACTGATATATTGTACTATGCATAGAAAGTTGTAGGTGGCGTTCAGGGAAGACTTTGATTTTAATAAAGCAATATTTAGTATTGAAGACAAACACTTTTTATTTTCAGATTTCTGCCAAGTAAAACAGAAATTGCCAATAAAATAATCAGTATTTTGTAAATGGCAGGCAAGCTTCTGGCTGTCGAAAACATCTGAGTCATTTATTCAGTAGACAATATGTCCTTGATCCAGGTTCTTTGCCAGCTATAAGGGAATCCCTGTCCTTGAGAGGCTCATAGTCTATAAGTAACATTACAGAATTTGTTAGCATACCCATTCATTATTAGTTTTACCTAAACGTGTTAGGATCACTACTGGTGGAAATTGTAACCAGCCTTTGGGCATCTTAAAGGGTGACATGTGGCATGCCTTTTTTTTTTTTTAAGAATTTAATGTTTTTCAAGATTGTAGTGTTGATCAGCGCAACAATTCAAGTGTGCAAAGTAACAGGATAGTTTGCCTCTTCACTTTACCCCTGGATAAAGGCACTTTCACTGCCTGTCACTGATCAGCAGATACTGACTTGTTGCCATTAAGTGAACTTGACTTCTTATGTGTGCTCTATGAGTTTGTTGTAATTTTCTTCTTGAAATTGTGATTTTTCACTGACAGTAATGACAAATTTAATGTATGTAATTGTCTATGCATTTTAAGTTAAACTGCCTAAAATGTGATTTGAGACATATACATATGTTTGTATTATAAATTGTAAGCAATCAGTTTGAGATACTAGGTTTTATCACCTGCTGCTGTATTTGTAAACAAAGACAAATGTTGCTTTAAGAAGTAATTATAATTAGGAATAGGCTATGGATGTGATACTTGGTATTTTTTAAGATAAACTTGTTTGCTTTTGTGTATTATACCTGGAAACTTTTTTTAAAAAATGTATTTTCATGGTTTCACAGATTTTTCATGTTATTTTATTCTTTAGGCCCAATTCTGGGCTTCTCTGAGCAAGTCCAGAGCCTAATTAACTGTAAATTTGTTGTCAAAAAGGAAGAAAAAAGGGCCTGAGATACCTCTTTGCATGTGACCTGCATTCACTAAGGATATCTGGAAACCACCCTTCCTCCGCAAACCCTCTCAGCAACATGGTGTCCATTGTGGTGATTTTCTCTTCTTTTAAGGCTAGGCTACTCTTGGTAACCAGATTATCCGTATATATGATAATATGAAGTCAGGGAACTTTCTCTGTCTGTCCCTACTCCCCTCACTCCCCCACTTTCTGTTATGAAAGATAGTTCTACTTTTATCATTAACTGCTACGCATTTAGTGAGGGTCACATTATTAAACTTGGAGTTTACCATTTTCCCACAGGAGATTTCGCTGGCATTCCTTGGAACTCCCAATTTCAGTAGGGCAATGAATGAATGAATACTTTGCAGTGCTACTTTTGGAAGGAATTTCTGCTTTTTGCCTTATGATTGGACAAAATGCAGCTGTAAAATTTTAAATTGTTTTTGATATGTTATTCAATATCCCATGAAAGTATTCACCTAAAGTGGAGTTATGAAATGGATGGTGAAATAATAAGACCATTCTGGAGCAGG

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