Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ZNF600P1
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr17:53952833-53955463  UCSC
Coordinates (T2T) chr17:54828422-54831052  UCSC
Coordinates (hg19) chr17:52030194-52032824  UCSC
Strand +
Parental Sequence NM_001321867.3
Parental seq. overlap 2133 bp
Parental seq. overlap (%) 52.2%
Genomic Region Intergenic
Retrocopy Summary ZNF600P1, located on chr17:53952833-53955463, is a retrocopy of the parental gene ZNF600. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ZNF600
Full Name zinc finger protein 600
Also known as KR-ZNF1
Coordinate chr19:52764164-52786825
Strand -
Gene summary Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ZNF816P2
Bonobo Pan paniscus ZNF28P2
Gorilla Gorilla gorilla ZNF701P1
Orangutan Pongo abelii ZNF816P2
Gibbon Nomascus leucogenys LOC100582391P1
Baboon Papio anubis LOC110740375P2
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ZNF600P1
AACCCAGAGCAAATTGAGACGTCCGGATGAGAGTTCAGTTGATTTCCAAAAACTCATGTTATGTAAGGAAGCCACCAAGAAGAGCAAAGAAAAGGAGCCAGGGATGGCTTTTCCTCAGGGACACTTGATTTTCAGTGATGTGGCTATAAAATTCTCTGTGGAGGAGTGGAAATGCCTGAACCCTGAGCAGAGGGCTTTATACAGGGAAATGATGTTGGAGAACTACAGGAACCTGGAGTCTGTGGATAGCTCTTTAAAATCCATGATGGAGTTCTCATCAACAGAGCAAGGCAATACAGAAGTGTTCCACACAGGGACATTGGAAAGACATGATTTTTGCTTCCCAGAAATCAAGAAAGATATTCAGGACTTTGAGTTTCAGTGGCAAGAAATTGAAAGAAATGGCCATGAAGCACCCATGACAGAAATCAAAGAGTTAACTGGTAGTACAGACTGACATGATCAAAAGCACACTGGAAACAAGCCCATGAAAGATCagcttggattaagcttggattaagcttTCATTTGCATCTACCTGAACTGCACATATTTCAGACTAAAGGGAAAATTGGTAATCAAGTGGACCAGTCTATCAATGATGCTTCCTCAGCTTCAACATCCCAAATAATTTTTTGTAGGCTCAAAACCCATATTTCTAATAAGTATAGGAATAATTTCCTGCATTCTTCATTATTCACACAAATACAGGAAGTACATATGAACGAAAAACCTTTCCAATGTAATGAGTGTGGCAAAGCCTTTAATTATAGCTCACACTTAAGGAGACATCACATAATCCATTCAGGAGAGAAACAATATAAATGTCATATATGTGGCAAAGCCTTTCATCAGAAGCAATACCTTCCATGCCACCATAGAGTTCATACTGGAGAAAAACCTCAGAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGAAGTCTTACCTTCAATGCCATCATAGACTTCATACTGGACAGAAACCTTACAAATGAGAATAATGTGACAAAGTTTACAGTTGCAGATCACAACTTAAAACACATAGGAGAATTCATACTGGAGGAAAAAGCATACAAATGTAAGGTTTGTGAGAAGGCTTTCTGGGATAATTCATGCCTTTCATGCCAAAAGAGAGTTCACATTGGAGAGAAACCTTACACAGGTAATGAATGTGACAAGGCTTTTAGTAGAAAAGCACACCTTGCACTTCATCATAGACTTCATACTGGAGAGAAACCTTAAGGTTTGTGACAAGGTTTTTTGGCATGACTCATGTCTTGTACAACATCAGAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGTCAAGGCCTTCACTTGAAATTCAGCCCTTGTAATGCATAAGGCAATTCACACTGGAGAGAAACCTTACACATGTAATGAATGTGGCAAGGCTTTTAGTAGAAAAGCAAACCTTGCACTTTATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTACAGTCGCAGGTCACACCTTGAAAGACATAAATGAATTCATACTGGAGAAAACCCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGGGATTCATGCCTTGCACAACATCAGAGAGGTTCATACTGGAGAGTTCATACTGGAGAGAAATCTTACAGATGTAATGAATGTGGCAAGGTTTTCAGTCAAAAAGGAAACCTTGCATGTCATTATAGACGTCATACCGGAGAGAAACTTTACAAGTATAATGAGTGTGGCAAGACTTCAGTCAGAACTCATTTCTTATAGGCCATTGTAGACTTCATACTGGAGAGAAACATTACAAGTGTAATGAGTGTGGCAAGATCTTCACTTGAAATTCAGCCCTGGTAATTCATAAGGCAATTTATACTGGAGACAAGTCTTACAAGTATAATGAATGTGGGAAAGCTTTTAATCAACAATCAAATCTTGCACAACATTAGAGAGTTCATACTAGAGAGAAACCTTACAAGTGTAATGAGTGTGGTAAAGCCTTTAGTGGGCAGTCTACACTTATTCATCATCAAGCAATCCATGGTATAGGGAAACTTTACAAATGTAATAATTCTCACAAAGCCTTCAGTAATGCTACAACCTTTGCAAATCATTAGAGAATCCATAATGAAGAGACATCTTACAAGTATAGTAAATGTGGCAAATTTTTCAGACATCGTTCATAGCTTGCAGTTCATTGGTGAACTCATGCTGGAGAGAAACACTACAAATGTCAAGATTGTGGCAAGGTCTTCAGTCAAGCTTCATCTTATGCAAAACATAGGAGAATTCACACAGGAGAGAAACCTCAAGTGTGATGATTGTAGCAAAGTCTTGACTTCACATTCACACAGTATTACACATCAGAGAATCTATACTGGACAGAAATCTTACAAATGTCATACATATGGCAAGGTCTTCAGTCCGAGGTTAATCCTTGCAGAACATCAGAAAATTCATTTTTGAGATAATTGTTCTAAATACAATGACTATAGCAAATCATAAAGCTTTAATTGACATTAGAGCCTTCAGCAtCAAACATAATTGACATTAAAATGTTTATGTTAAG
>NM_001321867.3
AGTCCTGGGCGCGCACAAACCCGGAAGCGGATCGCGTGGAGTGAAGGTCCTACCACGGCGCGTGAGTTTTGCTCTGCCTTGGATTAAGTCTGCACTTCCCAGGTCCCCGGCGCTTCTGCCCCTGGGACGTGGGATCCCCACGGACCTGGAAATTCTCGCCTGTCTTCCCTTCACCCAGAGCAAATTGAGACGTCCCGGATTGATTCCTAAAGACTCATGTTATGTGAAGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGCCAGGCATGGCTCTTCCTCAGGGACGCTTGACTTTCAGGGATGTGGCTATAGAATTCTCATTGGCAGAGTGGAAATGCCTGAACCCTTCGCAGAGGGCTTTGTACAGGGAAGTGATGTTGGAGAACTACAGGAACCTGGAAGCTGTGGATATCTCTTCCAAACGCATGATGAAGGAGGTCTTGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGATATCAAAGTTATCACATTGGAGATTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATGATATTGAGTTTCAGTGTCAAGAAGATGAAAGAAATGGCCATGAAGCACCCATGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAACATGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGAACTCCACATAATTCAGATCAAAGGTAAAATTGGTAATCAATTTGAGAAGTCTACCAGTGATGCTCCCTCGGTTTCAACATCCCAAAGAATTTCTCCTAGGCCCCAAATCCATATTTCTAATAACTATGGGAATAATTCCCCGAATTCTTCACTACTCCCACAAAAACAGGAAGTATACATGAGAGAAAAATCTTTCCAATGTAATGAGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTTAAGGAAACACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATGTATGTGGCAAGCTCTTTAATCACAAGCAATACCTTACATGCCATTGTAGATGTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGAAAGTCCTTCAGTCAGGTATCATCCCTTACATGCCATCGTAGACTTCACACTGCAGTAAAATCTCACAAGTGTAATGAGTGTGGCAAGATCTTTGGTCAAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAAAAACCTTACAAGTGTAATGAATGTGACAAAGCTTTTAATCAGCAATCAAACCTTGCACGTCATCGTAGAATTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGGAAATCAACCCTTGAGTCACATAAGAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACACAGCTTTCACATGGAATTCTCAGCTGGCAAGACATAAAAGAATTCACACTGGAGAGAAAACTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCACAAGTCATCCCTTGTATGCCATCATAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTCTGTGACAAGGCTTTTGCGTGGAATTCACACCTGGTAAGACATACTAGAATTCATAGTGGAGGAAAACCTTACAAGTGTAATGAATGTGGGAAGACCTTTGGTCAAAATTCAGATCTTCTAATTCATAAGTCAATTCATACTGGAGAGCAACCTTACAAATATGAAGAATGTGAAAAGGTTTTCAGTTGTGGATCAACCCTTGAGACACATAAGATAATTCACACCGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTTGCGTGTCATTCCTATCTGGCAAAACATACTAGAATTCATAGTGGAGAGAAACCTTACAAGTGTAATGAGTGCAGCAAGACCTTCCGTCTGAGGTCATACCTTGCAAGCCATCGCAGAGTTCATAGTGGTGAGAAACCTTACAAGTGTAATGAGTGCAGCAAGACCTTCAGTCAGAGGTCATACCTTCATTGCCATCGTAGACTTCATAGTGGTGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCACAAGCCATCCCTTGTTCACCATCGTAGACTTCATACTGGAGAGAAATCTTACAAATGTACGGTTTGTGACAAGGCTTTCGTGCGTAATTCATACCTGGCAAGACATACCAGAATTCACACTGCAGAGAAACCTTACAAGTGTAATGAATGTGGGAAGGCTTTTAATCAACAATCACAACTTTCACTTCATCATAGAATTCATGCTGGGGAGAAACTTTACAAATGTGAAACATGTGACAAAGTTTTCAGTCGCAAATCACACCTTAAAAGACATAGGAGAATTCATCCTGGAAAGAAACCATACAAATGTAAGGTTTGTGACAAGACTTTTGGGAGTGATTCACACCTGAAACAACATACTGGACTTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGCAAGCAGTCAACACTTATTCACCATCAGGCAGTTCATGGTGTAGGGAAACTTGACTAATGTAATGATTGTCACAAAGTCTTCAGTAACGCTACAACCATTGCAAATCATTGGAGAATCTATAATGAATAAAGATCTAACAAGTGTAATAAATGTGGCAAATTTTTCAGACATCATTCATACATTGCAGTTCATTGACACACTCATACTGGAGAGAAACCTTACAAATGTCATGACTGTGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATAGGAGAATTCATACAGGAGAGAAACCTCACATGTGTGATGATTGTGGCAAAGCCTTTACTTCATGTTCACACCTCATTAGACATCAGAGAATCCCTACTGGACAGAAATCTTACAAATGTCAGAAGTGTGGCAAGGTCTTGAGTCCGAGGTCACTCCTTGCAGAACATCAGAAAATTCATTTTTGAGATAACTGTTCCCAATGCAGTGAGTATAGCAAACCATCAAGCATTAATTGACACTAGAGTCAGTCCAGCATTGACTTGAGTTTGTGTTGACTTAACATTGAGTTCAACCCTTAATTGACATTCAAGTGTTTATGTTAAGAGGATTGggccaggtgtggtttctcacacctgtaattccagcacggttggaggccaaggcacataggtcacttgaggtcagaagtttgaaaccagcatggccaacaGATGTCAGCCACTTTTCCCAGCCTGTTTTTTGATTCTTATTTTCTATTTTTCTTTTTTGAGATAGTACTTTTTAAAGAGATAGTACTTTTTTGATATAGTACTTTATAAAAGGGAGATCAggccaggcacggaggctcatgtaagtaatcccagcactttgggaggccgagacgggcccatgacaaggtcaggagatcgagaccgtcctggctaacacggtgaaaccccatctctactaaaaatataaaatattagccaggcgtggtggcaggtgcctgtagtcctagctgcttgggaggctgaggcaggagaatggtgtgaatcctggagacggagcttgcagggagccaacatcgtgccactgcactccggcctgggcgacagtgagaatctgtctcaaaaaaaaaaaaaaaaaaaGGATATCAAAGCTGGATggtggctcatccctgcaatcacaacactttggtagactgatgtgagtggatcacctaaggtcagaagttcaagagcaccctggctaacatggtgaaaccccatctctactaaaaatacaaaagttagccggggggtggtggtgtgcacctttagttccagctacttgagaggctgaggcacaagagtcgcttaaacctgggaggtagaggttgccgtgaggcaaaatcgtgccactgccctcagcctgggcagtagagtcagtctccatctcaaagaaaccagcaaacaaaaaatattaaaaaaaaaCATTAAAAATGCTTTTGTTCTCATTGTTCAA

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