Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NIPSNAP1P1
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr22). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr17:5730642-5731808  UCSC
Coordinates (T2T) chr17:5624887-5626053  UCSC
Coordinates (hg19) chr17:5633962-5635128  UCSC
Strand +
Parental Sequence NM_001202502.2
Parental seq. overlap 859 bp
Parental seq. overlap (%) 42.7%
Genomic Region Intergenic
Retrocopy Summary NIPSNAP1P1, located on chr17:5730642-5731808, is a retrocopy of the parental gene NIPSNAP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NIPSNAP1
Full Name nipsnap homolog 1
Also known as -
Coordinate chr22:29554808-29581113
Strand -
Gene summary This gene encodes a member of the NipSnap family of proteins that may be involved in vesicular transport. A similar protein in mice inhibits the calcium channel TRPV6, and is also localized to the inner mitochondrial membrane where it may play a role in mitochondrial DNA maintenance. A pseudogene of this gene is located on the short arm of chromosome 17. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Feb 2011]

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus NIPSNAP1P1
Gorilla Gorilla gorilla NIPSNAP1P1
Orangutan Pongo abelii NIPSNAP1P1
Gibbon Nomascus leucogenys NIPSNAP1P1
Golden snub-nosed monkey Rhinopithecus roxellana NIPSNAP1P1
Chimpanzee Pan troglodytes Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NIPSNAP1P1
CAAGGAGTACCTGGAGGTCCGGAAGGAGTGCAGCTGGATGCTGTTGTCCAGGAGACACCAATTGCTCCTTGAGTTCAGCTTCTGGAATGAGCCATAGCCCAGCGTGGACCCCAACATCTTATGAGCTGAGGACATGCAAGCTGAAGCCAGGAACCATGATGGAGTAGGGGAACAATTGGGGTCCTGCCAGCAGGTACCAGCAGCAAGTCCCAGCAGGAGAACCAGGAGGTGATCGTGGCTCCTCCCAAATAGGAGAGCTCCACCTTGTGCATCATCTCTGGTCCTATAAAGACCCACAGTCTTGGGAGGAGACCCGAAGTGCTGCCTGCAGGAAGAGGGCTTGGGATGAAATGTCTATTGTACAGTTCCCCTCGGGCAACACGTGGAGTCTTggatcctcttgaggatcctcttgaggtcctcttgaAGACCTCACCTCTCCAGTCATGCTCCCAACACTTCTACCTTCTTCCCTTTCTCCCTCAGGGCAACCCTGGACAGAGGAGCACCCCAGTCCTACTGTCATGGTTTTCTCTTGGCTCTGGGAGGACTCTGAGGGTCCATGCTTAGCTCAGACAACGGGGAACTGAAGGATGACAAATTCTGAGGACTTAGAGCTCAGCTCAGCTCCTTCCTGCCTTCCCCTCCTCCCTCCTTCCCCCTGCTGGAAGTAGTTCCTAATTTCTCTGAATGAAACATAGCAATCTTCTAGGTCTGCTGACATCTTTTCCTAAGATTTCTCAGTCCCCAGCTATCACCACAGAAATCCTCGGTTTAGCTTAATTGCACAAAAGGAAGTATGTCCAGTGGTTAGAGGTGGGATGGGAGGGAAGGAGGTCAGGTCAGGCCAAGCCAGGTCCTCAGGAATTCCCTGATCTCCACTGAGCCACTGCCACCCACTTGCTGTTTAGTCTAAACCAAGTCCCTCCTGATGGGGAAAATCCTGGAACTGCTAAAAAAAACCCCTCAAATCGGCAAGGTCAGGAGGATGTCCAGACATTCCATCCAAAAAGACAGGGAAAAAGGATGGGACCCAGGAAGGATTTAGGGGCAGGAGACAGACATGTAAC
>NM_001202502.2
GGGGCCTTCCTGCAACCTTTGCGGCTCCAACATGGCTCCGCGGCTGTGCAGCATCTCTGTGACGGCGCGTTTCTATTCCAAGGACAATGAAGGCAGCTGGTTCCGCTCCCTCTTTGTTCACAAAGTGGATCCCCGGAAGGATGCCCACTCCACCCTGCTGTCCAAGAAGGAAACCAGCAACCTCTATAAGATCCAGTTTCACAATGTAAAGCCTGAATACCTGGATGCCTACAACAGCCTCACGGAGGCTGTGCTGCCCAAGCTTCACCTGGATGAGGACTACCCATGCTCACTCGTGGGCAACTGGAACACGTGGTATGGGGAGCAGGACCAGGCAGTGCACCTGTGGCGATTCTCAGGTGGCTACCCAGCCCTCATGGACTGCATGAACAAGCTCAAAAACAATAAGGAGTACCTGGAGTTCCGAAGGGAGCGGAGCCAGATGCTGCTGTCCAGGAGAAACCAGCTGCTCCTCGAGTTCAGCTTCTGGAATGAGCCACAGCCCAGAATGGGTCCCAACATCTATGAGCTGAGGACATACAAGCTCAAGCCAGGAACCATGATCGAGTGGGGGAACAACTGGGCTCGGGCCATCAAGTACCGGCAGGAGAACCAGGAGGCAGTGGGCGGCTTCTTCTCACAGATAGGAGAGCTCTACGTGGTGCACCATCTCTGGGCCTATAAAGACCTGCAGTCTCGGGAGGAGACTCGAAACGCTGCCTGGAGGAAGAGAGGCTGGGATGAAAATGTCTACTATACAGTCCCCCTGGTGCGACACATGGAGTCTAGGATCATGATCCCCTTGAAGATCTCGCCTCTGCAGTGATGCTGCCTACACCTCCACCTCCTTCCCCTTCTCCCTCAGGCAACCCCGACAGACAGTGGCACTCCTGGTCCTGCTGTCTTGGTTTTGTCTTGGCTCTGGGAGGACTCTGAGGGGCAGTGCTCAGTTCAGACAAGGGGGAACTGAAGGCTGACAAGTTCTGAGGATTACAGCTCTGCCCAGGCCCTTTCTACTTTCCCTGCCTGCCTCCCTCCCCCTGCTAGAAGTAGTTTCTGATTTCCCTGAATGAAAGATAGTGATCTTTTAGGCCTTCATTTATCTTCTAAAATTCCTCATCTCAAGGCCACCAGTCCCCAGTTATCACCCTTGGAAATCCTCTGTTTAGCTTAGTTGCACAAAAGGTAGTATGTCCAGTGGCTAGAGGTGGGGTGGGAAGAGAGGAGGCCAGGCCAGGCCCTCAGGAATTCCCTGGTTTCCACTGGGCCACCCACTTGCTGGACAGTCTGAGCCAAGTCCCTCCTGCTGGAGAAAAGCCTGGAACTGCCAaaacaaaaaaacaaatacaaacaaacCTCGTCACCACGGTCAGGAGGAGGTTCAGACATTCTGCCCAGAGGGGCTGGGGAAAGGGATGGGAGCCAGGAAAGATTTAGGGGCAGGAGACAGACACGTAACAggaactcggaaggtagaacttagaattcagaacttgggtttcaattgtagaatttggaatctggaatacagaattgggaaGAAGAACAGAGATGACAAAAGACCACTTGAAGAGAGGTTCCTAATACTAGACAGATGGAGAGTGGCTTGGCTGTTTCCCCCTGCATATTGGGGTTGAAAACTTAAATGTGTAGTTCCAGTCCTTCTATGCAGAGTCTCTCCTGCCCTCCCTCCTTCCTGCAGGCAAATATACAAGCTAGACCCTGTTCCCTCACCCTGTATCCTGTCTCCCCTAATTGACATTCTATCAGCCCAACCCTCATTCTGCAGGGCCACCTGGTGTGTGGAGGTGGCGGGAGGGGTCAGTGACTCTGGGGGTCTCCTCAGTGACCCCCATACCTCATCATGAACCCTTGGGTAGCTTGATTCTGCCTACCATCCAGGAAAACTTGTGCTGGAATTGCTGATGGAAACAATTAAATATTTACTATAAA

Publications

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