Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CHCHD4P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Macaca fascicularis
Coordinates chr1:3168384-3168691  UCSC
Strand -
Parental Sequence XM_005571673.1
Parental seq. overlap 243 bp
Parental seq. overlap (%) 16.9%
Genomic Region Intragenic (SMYD3)
Retrocopy Summary CHCHD4P1, located on chr1:3168384-3168691, is a retrocopy of the parental gene CHCHD4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CHCHD4
Full Name N/A
Also known as -
Coordinate chr11:86107704-86121916
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CHCHD4P5
Chimpanzee Pan troglodytes CHCHD4P1
Bonobo Pan paniscus CHCHD4P1
Gorilla Gorilla gorilla CHCHD4P1
Orangutan Pongo abelii CHCHD4P1
Gibbon Nomascus leucogenys CHCHD4P2
Rhesus Macaca mulatta CHCHD4P1
Golden snub-nosed monkey Rhinopithecus roxellana CHCHD4P3
Green monkey Chlorocebus sabaeus Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CHCHD4P1
ACTCCAATCAATGCAGAGCTGGTGGCTGATGACTGCAGGATCCCTGTGAGGAGCACGGATTGATACTGCCAAATGGATACATTAACTGAAACTACTCAGGCCTTAGGGGAATGGCCAGAGGCCCCTGTAGGGAACAGTTCAAGTCAACCTTTTCCTGCTTCCATTGTAGGATGGAGGATTCAAGGGCTTAGACTATATAAACCAGTTCAAGGCCGTGCAGGAACCTATGCAGAAATACTCAAACCTCTATTCCCAAgCCCGCAGAACAAGTAGAAGAAACAGCTT
>XM_005571673.1
TCCGGCTGAGGTGGGCCTGGCCGCGGTTAAGAGGGCGCCGAGGCAGGCGCGCGGCGGGCAGGCCTGGAGGGGGCGGGTCCGCGCGGGCTTCGGAGGCGCCCGCACTGCCTGAGGAGAGGAGGTCACGGCGTAAAGCTGCAGCTACCGCCACTGCCGCTTCTGCAAGGTCTCAGGGACGGGCTGCAGCCATGTCCTATTGCCGGCAGGAAGGGAAGGATCGAATCATATTTGTAACCAAAGAAGATCATGAAACTCCAAGCAATGCAGAACTGGTGGCCGATGACCCCAATGATCCATACGAGGAGCACGGATTGATACTGCCAAATGGAAACATTAACTGGAACTGCCCATGCCTTGGGGGAATGGCCAGCGGTCCCTGTGGAGAACAGTTTAAGTCAGCCTTTTCCTGCTTCCACTATAGCACGGAGGAGATCAAGGGGTCAGACTGTGTAGACCAGTTCCGGGCCATGCAGGAATGCATGCAGAAATACCCAGACCTCTATCCCCaagaggatgaggatgaggaagaggaaagggagaagaagccagcagaacaagtagaagaaACAGCTCCCACTGAGGCCACTGCAACCAAAGAAGAGGAGGGGTCAAGTTAATGAAGGCCACAAGGCACTGGGCTCCAGTCCTTTTGGAGTGGACCTTTTGCAAAAAGGCCTTGTTGTCACCTTCCAGGAAAGTGTCTTTCCCTCTGTTGTCCTGTGCACTGTAATATACAAAATAACTTATTTTGATGATCAGGGGTCTTGACCTCTTGACATATACACTGAAAAAAATGGGGGTTGTATGTATGTGTGTCCTACCTAAACCTGTAGCTGCCACTTTTGAATTCTCTTCTCAGATTGCCCTGAATTTTGCCACTTTTAAATAACGTGCTGAATAAGCTCAGCAACTAAAAACCATTACCCAGGAAGGTTTCTTGTGAGTGAGCTGATTTATTCTGATTCATTATATTCCTTTTGGTAGATTTTATACCCCTTGGGGAAAATAATACAAGTATAGAAACAAAAACATATTCTCTTAAAAATGCTGGGGTGGGGCCATATCTACTAGCAGAGGCCAGATGGTCAGATACGATTTCTGCAAACCCATCTTGACCTTGAGTATGTGAAGGGGTACTGCACTTCATTCCTGATACATTTTGGTTTCCATGTTGGTGTGGAGCTCCTGGTTTTCTGTGTTTGGACGGTGAAGATTTGGACCCTCGCATTCACAGTCCCTTTCTAAGTGAAGGGAGAGGCTGGCTTGGCTGTTCCTTGTTATTCCGAAAGCCCTGGTTTGGGGCCCATGTTCACACTGGCTCTCAGTCTGGCCAGGTGCAATGTTCTTGAGAGGTGGGGACCTAATTATTACCAGAGTAGCAGGAAGAGAGGAAACATTGTGAATTAAGTATTCAATTAAAAGGAAACATGATTTCTACCTGA

Publications

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