Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name SEC24AP1
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr17:69093946-69095501  UCSC
Coordinates (T2T) chr17:69970517-69972072  UCSC
Coordinates (hg19) chr17:67090087-67091642  UCSC
Strand -
Parental Sequence NM_021982.3
Parental seq. overlap 1256 bp
Parental seq. overlap (%) 19.5%
Genomic Region Intragenic (ABCA6)
Retrocopy Summary SEC24AP1, located on chr17:69093946-69095501, is a retrocopy of the parental gene SEC24A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SEC24A
Full Name SEC24 homolog A, COPII coat complex component
Also known as -
Coordinate chr5:134647757-134727909
Strand +
Gene summary The protein encoded by this gene belongs to a family of proteins that are homologous to yeast Sec24. This protein is a component of coat protein II (COPII)-coated vesicles that mediate protein transport from the endoplasmic reticulum. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the golgi complex. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2011]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SEC24AP1
Bonobo Pan paniscus SEC24AP1
Gorilla Gorilla gorilla SEC24AP1
Orangutan Pongo abelii SEC24AP1
Gibbon Nomascus leucogenys SEC24AP1
Green monkey Chlorocebus sabaeus LOC103244555P1
Crab-eating macaque Macaca fascicularis SEC24AP1
Rhesus Macaca mulatta SEC24AP1
Baboon Papio anubis LOC101004329P1
Golden snub-nosed monkey Rhinopithecus roxellana SEC24AP1
Marmoset Callithrix jacchus SEC24AP1
Mouse lemur Microcebus murinus SEC24AP1
Greater horseshoe bat Rhinolophus ferrumequinum SEC24AP1
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SEC24AP1
CCACTGACTTCTACAAGAAATTAGTCTGGGACTCTTTTGGCCAGCAGGTAGCTGTTGTTCCTTCTCAGTGGACAGCACTTGGGTTTGACTTCTCTGGGCTATATTTCTTTGTATTCAGCAAACAGTGTCTATAACTATATCTCTTACCACCATCAGCACAATCCAGTGGAAGTACAGAGGCTACAGAAAGAACATTAGGCTCACCTTACTCGGAAAAACTGGCTTTGAGGCAGCCATGAGGATCTGGTGCACAAAAGGTCTTTCCATTTATCCTTTCCATGGAGACTATTTTTTGTTCAGTCAACAGACTTACTGCCATTGTCCAGTGTAATCTCAGGTGCTAGATCAGATGTCTGTAGAAGAGAGTCTTACTGACACTTGGTTGGTTTCTTTTCAGTCAGCACTCTTGTATCTGTCTAGCAAAGGTGAACAAAGAATTCACATTCATTCTTAGTGTTTGCCAGTAGTTTTAGCTCTGAACGAAGTCTACCTTGGAGGTGATAGCCAAGAAATGTCAGGGTTATTGTCCAGCGTGGTTGCGCATGGGTCTGCTCCTGCCAGCCTGAGTGATGCTGCAGATGCCCTAGTGAGTGCCCCTCATAGATGCTTTTTCAGCAGCTTGTCCTTCAGTCCTAAGTAAACAGCATGCTGGAATCAAGCTTCCTTTTGTGGCTTTTGCCACTCCTTGTGTTGACCCTTATTACACAGAAATCATTCCAAACTGGAACAAATGCACATCTAGATGGACACATTTTTTGCTATGTGCCTCATGAAATAGTTGCCCCTGGCTTACCGTATACTCACAACTTATCCCAGTTTGTATAGAGCTGGAAATTTCTCAGACAAGAGAGCATTCAGCATCAGTGATAGAAACATACCTCAGCCCTTGCCTTTTAGCTTTTAGTGGAGAAGCTGAGCAGGTTTAATTTCCTCATGGCTGCAGGCTCCATAGTGATGCTTTGGGTTGGAAAACATTATAGACAAGATTTTCTCAGCCAAGTTCCAGGATTTCAAATCTGTGCATCAATTCCATAGACTGTGACAGAACTTCTAGAACTTAATAGGCCAGAATCTTCCAAAACAATAAGTTTCATCTCTAGGCTTAGAGAGCAGAAACCATTTTCCCATTGTGGAGTAAGGAGTGAGAGTCCAGTGAGAGGAACTTTCCTTCAAAAAATGGCAGAAGACAGAATCTGCATTATCATATTATGAATGCCCCTTGTATATACGGCAGCAAGTGAATAGATGAACAAAAGAAGAAATTTGACTTTGTTCTTTCTAAGGAAAGATGATAATGCAGAACCACTTCTTAGGCTTGTGAACTAACATGGTGATTAAGGTGTTCTCACTGTGATTTGAAAAAATTATCACAAATAAAAGATCACAGCAGAAAATCAGACATGACACTGAGAAACACTGTATTTTTAAAATCAAAACACATACACGTATGATTGCATGCCTTTTATCCTTTGCTGCCATTTATGCTTAAGTTGTTATGGATTCAAATAAGGCAAGACAATATTCCAGAGGCAAGGTACGTTTTGGAAAACAAAGAC
>NM_021982.3
ACTTCCGGCCAGGGCCTCCCTCCTTCTCTCTAGGTTTGGCTGCCGCCTTCTAGCCGGGCGTTCGCGGCCCCGCCGGCCCGACTCTCAAGCCTCAGCTCCCAGGCTAGGCTGTGGCCGCCGGTGGCCTGGGGAGAGTGCGGCGCCATGCCTCGGGCTTAATGCGCCCCCCCCTCTTCTCCCAGTCTTCAGTCTTAAGTCGTTAGCCTCCTCCCTCCGCTTTCAGCAGTGGTCTTTCAGCTCTCTTCTTGTGCGCTGTTGTCGACCCCGACCAGCCCCTTCCAACCCAGTCATCATGTCCCAGCCGGGAATACCGGCCTCCGGCGGCGCCCCAGCCAGCCTCCAGGCCCAGAACGGAGCCGCCTTGGCCTCGGGGTCTCCCTACACCAACGGTCCTGTCCAAAATGCATTGCTGTCTTCACAAGAGTCAGTGAGCCAAGGATACAATTTCCAGCTTCCAGGATCCTACCCTCATCCAATACCAGCAAAGACTTTGAATCCAGTCTCTGGACAGTCTAACTATGGTGGTTCTCAGGGATCTGGGCAGACTCTTAATAGACCACCTGTGGCCTCTAATCCAGTGACACCTTCGCTTCATAGTGGTCCTGCTCCCCGAATGCCATTACCTGCTTCTCAGAACCCAGCTACTACACCAATGCCTTCTAGTAGCTTTCTTCCTGAAGCCAACCTGCCACCACCTTTGAATTGGCAATATAACTATCCATCCACAGCCTCACAAACAAACCATTGTCCTCGTGCATCATCCCAACCAACTGTATCTGGAAATACAAGTTTAACCACAAATCATCAATATGTTTCTTCTGGATATCCTTCACTTCAAAATAGCTTCATAAAGTCAGGTCCTTCTGTACCTCCCTTAGTGAATCCACCTCTGCCTACAACTTTTCAACCAGGAGCTCCTCATGGGCCCCCTCCAGCTGGAGGCCCACCCCCAGTGAGGGCCCTCACGCCCCTGACATCATCATATAGAGATGTACCCCAGCCCTTATTTAATTCAGCTGTCAACCAAGAAGGTATTACATCAAATACCAATAACGGATCTATGGTGGTCCACAGTAGTTACGACGAGATTGAAGGAGGTGGCTTATTGGCAACACCACAGCTTACTAACAAGAATCCCAAAATGAGCCGAAGTGTTGGATATTCATATCCCTCCTTACCACCTGGTTATCAGAACACAACACCACCTGGTGCAACTGGAGTACCACCCTCTTCCTTGAATTACCCAAGTGGGCCACAAGCCTTTACTCAGACTCCCTTAGGTGCTAATCATTTAACCACAAGCATGAGTGGATTAAGTCTACAACCAGAGGGTCTAAGAGTTGTCAATCTTCTTCAAGAAAGAAACATGCTTCCGTCAACACCTTTGAAGCCTCCAGTTCCAAATTTGCATGAAGACATCCAGAAACTCAACTGTAACCCAGAGTTATTTCGATGCACGCTGACTAGCATTCCTCAGACGCAGGCCTTATTGAATAAAGCCAAACTTCCTTTGGGGCTGCTGCTTCATCCTTTCAAAGACTTAGTGCAATTGCCTGTGGTTACCTCCAGTACAATTGTGAGATGCCGTTCATGCAGGACGTACATCAATCCTTTCGTCAGCTTTCTTGATCAAAGGAGATGGAAGTGTAACTTATGTTATCGAGTCAATGATGTTCCTGAAGAATTCTTGTACAACCCTTTGACCAGAGTTTATGGAGAACCTCACAGAAGACCAGAAGTTCAAAATGCTACTATTGAGTTTATGGCTCCTTCAGAATACATGTTACGACCACCTCAGCCTCCAGTGTATCTCTTTGTATTTGATGTGTCTCACAATGCAGTCGAAACTGGATACTTGAATTCAGTTTGCCAGAGTTTGTTAGACAATCTGGATTTGCTTCCTGGCAACACTAGAACAAAAATTGGCTTCATAACATTTGACAGTACAATCCATTTCTACGGTCTTCAGGAAAGTCTCTCTCAACCTCAGATGCTAATAGTTTCAGATATTGAAGATGTTTTTATACCTATGCCAGAGAACTTATTAGTAAACTTAAATGAAAGTAAAGAGCTCGTGCAAGATTTACTGAAAACTTTGCCACAAATGTTTACCAAGACTCTGGAGACCCAGAGTGCCTTGGGTCCTGCACTGCAGGCTGCCTTTAAGCTGATGTCTCCAACTGGTGGTCGAATGTCTGTCTTTCAAACACAACTCCCAACTCTTGGAGTGGGAGCCCTGAAACCACGAGAGGAACCAAACCACAGGTCATCTGCTAAGGATATACACATGACACCATCCACTGACTTCTATAAGAAATTAGCCTTGGACTGTTCTGGTCAGCAAGTTGCTGTTGACTTATTCCTTCTCAGTGGACAGTATTCTGATTTGGCTTCTCTGGGTTGTATTTCTCGGTATTCAGCAGGTAGTGTCTATTACTATCCCTCTTACCATCATCAGCACAACCCAGTCCAAGTACAGAAATTACAGAAGGAACTACAGAGATACCTTACTCGGAAGATTGGCTTTGAGGCAGTCATGAGGATTCGGTGCACCAAAGGTCTTTCCATTCATACTTTCCATGGAAACTTCTTTGTTAGGTCAACCGACTTACTGTCTTTGCCTAACGTCAACCCAGACGCTGGGTATGCAGTACAGATGTCAGTGGAAGAGAGTCTTACTGACACTCAGTTGGTTTCTTTTCAGTCAGCACTCTTGTATACATCCAGCAAAGGCGAAAGAAGAATTCGTGTTCATACTTTGTGTTTGCCAGTAGTTTCGACTCTGAATGATGTCTTTCTTGGAGCTGATGTTCAAGCAATTTCAGGGTTATTGGCCAATATGGCTGTTGACAGATCTATGACTGCCAGTCTGAGTGACGCTCGGGATGCTCTAGTGAATGCAGTCATTGACTCCCTTTCAGCTTACCGTTCTTCAGTCTTAAGTAACCAGCAGCCTGGACTCATGGTTCCTTTTTCTTTGCGGCTTTTCCCACTTTTTGTGTTGGCTCTCCTTAAACAGAAATCATTCCAGACTGGGACAAATGCACGTCTAGATGAACGCATTTTTGCTATGTGTCAAGTGAAAAACCAGCCCTTGGTTTACCTTATGCTCACAACTCATCCCAGTTTGTATAGAGTTGACAATCTCTCAGATGAGGGAGCACTCAACATCAGTGATAGAACCATACCTCAGCCCCCCATTCTTCAGCTTTCAGTGGAGAAGCTGAGCAGAGATGGAGCTTTCCTCATGGATGCAGGCTCTGTACTGATGCTTTGGGTTGGAAAAAATTGTACACAGAATTTTCTCAGCCAAGTTCTAGGAGTTCAAAACTATGCATCAATTCCACAGCCTATGACAGACCTTCCAGAACTTGATACACCAGAATCTGCCAGAATAATAGCTTTCATCTCTTGGCTTAGAGAGCAGAGACCATTTTTCCCAATACTTTATGTAATAAGGGATGAGAGTCCAATGAAAGCAAACTTCCTTCAAAACATGATAGAAGACAGAACAGAATCTGCATTATCATATTATGAATTCCTGTTGCATATACAGCAACAAGtgaataaatgaatgaatgaagaaATTTGACTTATTTTTAAGGAATGTCACGATAGTGCAGAATACCTGGAAATGTGTAATACCTTCTTTTTCTATTATGTTTGTGGACTAATGTGATGATTGAGATGTTCTCACTGTGATTTCAACAACCTATAGCAAATAAAAGACCACAGCAGAGAATCAAACATGCAACTCTGAAATACTGTATTTTTCAAATCAGAATATAGCTACGTATGATTGGATACTTTTTTCTTGCCAATTATGTTTGAGTTGTTATGGATTAAAATAAGAATATTGCAGAGGCAAAGTACATTTTGTAAAATAAAGATTTCTGTGTTCTACATGTATATTTCTCATTTTTAATTTTTCTGAATCTTTGGCTGCTACATTTAAAACCTCACAAACCTAAGTGTTGCAGGGAAGTTACAAATTGATTGGTAGTGATGTTTTTAAAATAAAAACAATGGAAAGTAAATATAATGTAGGAAAACTAGAATTCATTCCCCACACGTGTCTTTTTTTTTTCTTTGTTAAGGGAAAGGATCATGTTGACTAAAACTAAACTAATTCTAGTATAGCTTGAGAAAAATATGAAGAAACACATTCAAGCTTTAAAATCTGTCAGTATTCTTTATGCTTGAAGAACAAAGTCACTTTGATTTGAAGTGAGAACTATCATTAGGTGGTTTTCTGATTTCCTGATGAAGAGTTGGACATACTGTCTTAATCTATAGTGAAAAGAATTTGAGCTGTCTTCATAAACACTGGGACTAGCAATGATAATAGGGAGATAAGAAACTTTAATTATCTTGATCCTTTAAGTGGATTTTATTTGGTGCATTTCTGCTCTGGGTATATAATAAAAGTGGGGGTTTTTGGTGAAATGAGTGAAGAAATGAAAGGTTTCTAAAGTGCTATCCAAATACATCAGTAACATTTTTCTAAGGAGTTTAATTGTTAAATTGGAAGTCATTCATAAGAAATATTTATGCTTGAATATGAAAATCTATGAAAGCATAAATGCTGCTGTTTGATTTGGTGGATATTAAGATTATACACATCCAACATATTAAAGTTATGAAAGAAACTTGACTTCTGAAAATCCTTAAGAGACTGCTTTCTTGATTCAGCTAGAGAAATATTATAGTCAAAACTATTGAGTGAATTTTGTTTACAAATAGGTAAATTATACATTTGTATATTTAAAGTGCTGTGACATAGTATCTTTAAGAGTTTGGCTCAGTTTTCACAGATTCATTTTGTCTTAAGAATTTCTTAAATATGTTCATGTATAATACTTGATCAAAATATTTTTGGGTTTTTTGTTTTGTTTTAATGGGTTAGAAAATGTTTACAATCTTGGTCTTATATGATCACCAATGGAATAGTAACTTCCAGGTTTATATCAATATGAGCTGACTTTAACTGAGTTGTTTGGGATAGGGAAGAAGCAGTCCCTCTACAGTATACAACTACTGCTTGCCAGCTGGATCAAAATAATCATGTTTTATGAAAATATCTCCCTTAAGCAGTGTTAAGGTTGGTTTGCAGTGTGTAAGTGGCACATTGAACTGGAAGTTTTCTTGAAAGCTGCTTCATCTATTAAGAAGCAATTTTCAAATTGTAGCGAATTATATTATCCCCTCTTTTAAAGAAACAGTCGTTATATGCTGATGTTTCTTAAAATAACTAAAATGTTCCTCTTAATGTGATTTTAAATGGAGTTATTTGTAGGTCCTTTCTTAGTAGTAAAGAATCTTCTAGAGGGAAACATTTGTGCTTTTAGGGATAATCTTCCTTGTGCCTCACTACATCCCTAAGTGGGTATGACTCTTGTTATTACCACATGCTTTTTTAGTATATTTCACAAATTTACTTTTAAATATTATTTTAGATACGGTGTAACATGTGCAATTCAGAATAATTTTATAACAGGTCATGAAAAACATAACTTTAGTTAGGATTCACAATATTTGTTCTCCACATAATGAGAGAATGAATGAGCCTTTGGAGATACTGATATAAGGCAATTATTTTTTGCAATGTTGAATGTGTTTTTTAGTTTGATTCTTTTTTTTTCCCCCAATAGGGCACTACCTGCCATATCATCTTGTATTACTTTTTGATGTAAAGCGACTAATATTTACACTATGCCATATTTTTTTTAATTATAGTTGTAAATTATGAAAGATCCTTGAATTTTCTACAGATCTACAACTACTAATGTAACAGACAAGGGCAATCTTGGTATTTAAATCTGAGCATGGCAGTTCTACCATAAAAAGTACTCTATTTTTCTAATTTCTAGGATTTTTAAAATAACATTTCTGTAAGTCTGACATACTAATAGTCACTCAAGCAGTACCATTTATTTTAGTTTGCATATATTTTCACTGTTTTTAATTTAATGTATTGAGTCTAATAGACTGTTTTGCAATAATTAGAATAAAGATTTATTTCTTCTAATCAAAGATGCATAACAGCTATTATCTAGGGGACCACCAAATGTGATTTCAAAATTTTGTTAACTATTACAAATGTAATCCTTATATAGAAATTTTAATTTTGTAAAGTAGTGTATAATATTGTAATATTAAATTCTTGTTCTTAAATTCAAATATGTATTGATCTTCAATGTGCTGTGTTAAATCTTGCTTCTCTGAAAAGTTGGAGACAAGATTTGTCTTCCTTTTTACAGTTTGTAATTTTCACTGTTTTATTCCTGTTAAAAAAAAAAAAAAGTCATTTGTAACCCATGCAGACCATTGTTTGATCTATGCTAACTTATCAACTTGGCTATTCAATAAAGTTAATTGAAAAGAGCTTA

Publications

PMID - Link Title