Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name SSR3P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:78091498-78092195  UCSC
Coordinates (T2T) chr1:77930282-77930979  UCSC
Coordinates (hg19) chr1:78557182-78557879  UCSC
Strand +
Parental Sequence NM_007107.5
Parental seq. overlap 660 bp
Parental seq. overlap (%) 15.6%
Genomic Region Intragenic (GIPC2)
Retrocopy Summary SSR3P1, located on chr1:78091498-78092195, is a retrocopy of the parental gene SSR3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SSR3
Full Name signal sequence receptor subunit 3
Also known as TRAPG
Coordinate chr3:156539553-156555117
Strand -
Gene summary The signal sequence receptor (SSR) is a glycosylated endoplasmic reticulum (ER) membrane receptor associated with protein translocation across the ER membrane. The SSR is comprised of four membrane proteins/subunits: alpha, beta, gamma, and delta. The first two are glycosylated subunits and the latter two are non-glycosylated subunits. This gene encodes the gamma subunit, which is predicted to span the membrane four times. [provided by RefSeq, Aug 2010]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SSR3P1
Bonobo Pan paniscus SSR3P1
Gorilla Gorilla gorilla SSR3P1
Orangutan Pongo abelii SSR3P1
Green monkey Chlorocebus sabaeus SSR3P2
Crab-eating macaque Macaca fascicularis SSR3P1
Rhesus Macaca mulatta SSR3P1
Baboon Papio anubis SSR3P1
Golden snub-nosed monkey Rhinopithecus roxellana SSR3P2
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SSR3P1
AATGGCTCCCAAAGGCAGCTCCAAACAGCCGTCCGAGGAGGACCTGCTCCTGCAGGATTTCAGCGGCAACCTCTCGGCCAAGTCCTTCGCGATCTTCTTCGGGAATGCGTTCGTCGTGTCTGCCATCCCCATCTGGTTATACTGGAGAATATGGCATATGGATCTTATTCAGTCTGCTGTTTTCTATAGTGTGATGACCCTAGAAAGCACATATTTGGTAGCCTTTGCATACAAGAATGTTAAATTTGTTCTCAAGCACAAAGTAGCACAGAAGAGGGAGGATACTGTTTCCAAAGAAGTGACTAGAAAACTTTCTGAAGCTGATAATAGAAGGATGTCTCGGAAGGAGAAAGATGTAAGAATCTTGTGGAAGAAGAATGAAGTTGCTGATTCTGAAGCTACAACATTTTCCATTTTCTATTAACAACACTCTGTTCCTGTTCTTGGTCATTTTTGCTTCTTCTTCGTTTTGAAGAACTTCAACCCCACAGTGAACTACATTTTGTCCATAAGTGCTTCATCAGGACTCATCGCCCTCCTGTCTACTGGCTCCAAGTAGACCATGTCAGCTTCACCCCCCGGCTTTGTGTCTGTGGGTGGCCTGTGGTATATGGAAAAGTAGCAGGGTGTTCAGGATGGGAGACACACAAGATGTTTTTATAGTCTAGAGCCTTTAAAAAACCCAAGGGAATGTAATT
>NM_007107.5
GTTCCCTGTTCTCGCCTGCAGCTCCGCCATGGCTCCTAAAGGCAGCTCCAAACAGCAGTCTGAGGAGGACCTGCTCCTGCAGGATTTCAGCCGCAATCTCTCGGCCAAGTCCTCCGCGCTCTTCTTCGGAAACGCGTTCATCGTGTCTGCCATCCCCATCTGGTTATACTGGCGAATATGGCATATGGATCTTATTCAGTCTGCTGTTTTGTATAGTGTGATGACCCTAGTAAGCACATATTTGGTAGCCTTTGCATACAAGAATGTGAAATTTGTTCTCAAGCACAAAGTAGCACAGAAGAGGGAGGATGCTGTTTCCAAAGAAGTGACTCGAAAACTTTCTGAAGCTGATAATAGAAAGATGTCTCGGAAGGAGAAAGATGAAAGAATCTTGTGGAAGAAGAATGAAGTTGCTGATTATGAAGCTACAACATTTTCCATCTTCTATAACAACACTCTGTTCCTGGTCGTGGTCATTGTTGCTTCCTTCTTCATATTGAAGAACTTCAACCCCACAGTGAACTACATATTGTCCATAAGTGCTTCATCAGGACTCATCGCCCTCCTGTCTACTGGCTCCAAATAGACCATGTCAGCTTCACCCCCTGGCTTTGTGTCTATGGGTGGCCTGTGGTATATGGAAAAGTAGCAGGGTGGTCAGGGTGGGAGACACAAGATGTTTTTATAGTCTAGAGCCTTTAAAAAACCCAGCAGAATGTAATTCAGTATTTGTTTATTGGCTGTTTTTTGACAGATTGTTGAAATTAAATGAATTGAAAGGGAAACTCAGAGTACTAGGACGTTTATTAAAAGGAAAAAAATGTCTTGCAATGTGCTGTAATCACAAGAGGAGAAAATAACTTGTTTCCTTGATCTGTCAGAGGTCACAGTAACCTGGGCCGAGCTGTTATTATTTATTATATAATAGTAGTAGGAAGTTAATAACTGGTTCTCTGTGTTCCAAGCACAATATTACAACTTCTTTTGAACCGTAAATATCAGAATGAATCCTCTTCCCAGGGGATTGAACAGAAGCTTAATGTTTACAAGTGTTTGAATTTGTGATCTGAAATAACACAAAATTAAAAACATGATTTCTCTAATTTTCCAACTAGAGGAAGAGAAACTTGTGGAAAAGttctttttttttcttttttttttcttAAAGAAGGGCAGCCAAGGTAGTAACCTAAAAATAGTGCCCAGGCATATGAGAGTTGTCCTACGAGGTTAAAGAACACACTGTTCCACTGTATGGCTTTGGCCCTGAGTGGCCAGGGAGGTCAACTTGACCCTGCCATGTTGGTTTGACTTACTAAGACACAGGAATCACTGTTTTCCTTGACCAGGGTCTCACACCCTGGAGGAATGTTAAGTAAGAGAAAGAACCTCTTTCCTGAATATTGACATGTAAAAGACCAAAGTAATTTTTCTGAACTTCTGCAATTCTGAGAACTCTCCAAGGAATTTACAGTGATTTTAGTGCTTGTCAGCATTTTTCCATGAGGACTTTCATACATTTGACTCTTTAGTTCACAGGTTCCCATTGATTGTGAGCAAGATATTTATCTCTTTAGCCCTTGGGGAtccagctgagagcaatctcttgcatttttttacccgtgtatgtacagatatcatttcttgtgtatgccatgacttgaaaaagtttgggaagctctTTAGCAATATCAGCTAAAAGGATATGAAATCACAGGTGATAGCAGTTGTCATTCAGTAATTTCCTACAAGCAGCACCCCAAAGGAAATATAGTCCTAATCTTTACTATCCACTTCTAAATTTAATGTGAATTTCATACATGTTATTAGTTGTTTTCTTTATAATTTTATAAAAATTATTCATCGGGAGTTTAACTTCCACTTCCATGCTATCGGATGTGTTGGGCTCCATGCAAGAACTTGGAAGAAAAACAGGCAGGAATGCATTTGCATAATGACCCAGATCATCATTTTCTGCAACTGAGAATTATATTTCATCATTGCTTCTAGAAGTCTGCAATTCTTTACTTTTCTTTGGTGCATTATTATCTAGGTGCCATCACTGGATAATGTGGAGTGACTAGAGAAGTCACATATCACTGTAAGGTACAGTTAGGGTAACACTTTAGAGGTTTATTATTTTTAAAAAACTTTTCTTGAACTcctggccaacatggtgaaaccccgtctctactaaaaataccaaaattagccaggcgtgatggtgggcgcctgtaatctcagctacttgggaggctgaagcaggagaactgcctgaacccaggaggcagaggttgcggtgagtcgagatcgtgctactactgcctgggtggcaagggtgagactccatctcaaaaaagaaacaaaaaaaCCCAAAAAGTTTTCTTTACTGTTGGTTAAAAAAAAAAGCCAGACCATAGTTTGACTGGTGGCATGGAATTTGTGTATCAAATAAATGCATTTGCTTATTTGACAAACCATCAGTGTCCACTATTTGTTACCAGAGTTGGGCCACTATCTTTTAAAATTGCTGGTGAAAACTTGCCACTAGATGGCAGTGCCTGTATAGATGGGGAAAAAATTGCCACCATTCTTGGTATAATACAGTGTAGCTTAGATGAGGTGGTGAAATAGGGGTATCAGCCGAATATTCCTAATATAGTTTCTCTTGAATTAATAAACTGAAGATTTGTAGGAAAATGAGTGAGCAAAATTTGTTTACTGTTGTGAATTTTTCCTACAGCACTGTTTTTAATCTTGATGTTTTCCAACTTTCTGTACTAATAGATACATTTCTGTGCATAAGATTATAAAGCATATACTCACAGTTCAGTAGTTTTCGTTAAGGATTTACTGTGTGAGTACTTTACTGTGAGGAATTGCAGAACCTTTTCCCCTCTACTCTTGTCTAAAAGTTCTGTGTGGCACACAGAGATGCGACCTACTCAATCTGACTTAGTAAAACCATGCTGTAGAATTTTTGTCTTAAAAAGACCACATACCCAGCACCCATGAAATAAAAGATTCATCTGTAATTGGGATTCAAAGTGATTAAATTCCTTTGTTCATACTCATAAATAGCACTAAAGTGTTATAACATTTTCATTTACCTATTTTTAGTTCCTTCATTTTAACTTAATAAAAATCTTGGATTGATAttcttttttttttttttttttttttgagacagcgtctcgctctgtcacccaggctggagtacagtggctctatcttggctcactgcgagctccgcctcccaggttcacgccattctcctgcctcagcctgccgagtagctgggactacaggcgcccgccaccacacccggctaatttttttgtatttttagtagagacggggtttcaccctgttagccaggatggtctcgatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctggaattacaggcgtgagccaccgcgcccggccTAGATTGATATTCTTAAGCAATAAAAGTTTACTGGTTGTCCTATTTGCCATATTATTGAAACTTGGAAAGGATAATTTGAAACAAGGTTTGAAGTTAACTGAAATATGGAGATTGAATTTATACTCAATTCTTGTGAAAAGTCTTGCTTAATAAGTATGATTAAACTTTGCTTCTTAAAATTTGTATTTTCCCTACACTTCTTTATAAGAATCCTATGATGAAGTACGTAATCTTTATTATATTATTTTACATTAACCATCTTTTTTTTCAAATTGttttattttttattttactttaagttctgggatacatgtgctgaccatgcaggtttggtacatatgtatacatgtAACCATCATTTTAATATCTCACACATGTAAATGCACATCTTTGTAGTTACCAATCAAATGTATGTGAGGCAATGAAAGGCATTGAGCAGTTACAGTAAAGGGCAGACATCAGGCCTCTGCCAGTATGTACCTGCTGTGCCTTCCTGCCTGCCCTATTTCTTTGTTTTCAGTGTGCATGCCAGTCACTGCTGCTTCTGGAGACAGGATGGAAGGATACATGTATGTGTACATTTATGGAGAAAACCAATTTATAGATGTATCAGAGCTCTAAGGGATTCTCTTTCACTTCCTTGGGACTCCCAAGCAGAGGAATTAATAGATTAGGAGGGTCTTTTGGGGGGTTGGTTTAAATTTTCAGGGCGATAGAGGCTAACTTCTCGTTGGCCTTCATGAATTTTCAATATATCATCTTTTCGCTGA

Publications

PMID - Link Title