Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ARID3BP1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:81501584-81505741  UCSC
Coordinates (T2T) chr1:81339129-81343288  UCSC
Coordinates (hg19) chr1:81967269-81971426  UCSC
Strand +
Parental Sequence NM_006465.4
Parental seq. overlap 3945 bp
Parental seq. overlap (%) 93%
Genomic Region Intragenic (ADGRL2)
Retrocopy Summary ARID3BP1, located on chr1:81501584-81505741, is a retrocopy of the parental gene ARID3B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ARID3B
Full Name AT-rich interaction domain 3B
Also known as BDP|DRIL2
Coordinate chr15:74541220-74598131
Strand +
Gene summary This gene encodes a member of the ARID (AT-rich interaction domain) family of DNA-binding proteins. The encoded protein is homologous with two proteins that bind to the retinoblastoma gene product, and also with the mouse Bright and Drosophila dead ringer proteins. A pseudogene on chromosome 1p31 exists for this gene. Members of the ARID family have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation and possibly in chromatin structure modification. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ARID3BP1
GGCCCCGGCTGTGGCCCCCGGCTGCGGAGGAGTCCGAGACGCAGCTGCCGCGCCTGGGCCTGAGCGGCCGCCTCCTCCGCCACCCGAAAACCCGGAGTGCCCCGCACAGGTTTAGACCCAGTGTGCCTGGTGGGCTGTGCCCAGGTTCAGAGTCATGCCACTCTGTGGGTGAAGCTTGAGGCAAAAATGGAGCCACTTCACACCTGGCTCCTCTGCAGATGGATGCCAGAGAGAAGCAGGGCCAGCAGATGAGAGAAGCCCAGTTCTTGTATGCCCAAAAGCTGGTCACGCAGCCGACTCTCTTTTCCGCCACAGCTGGGAGACCTTCTGGCAGCACTCCCTTAGGTCCCTTAGCCAGAGTTCCACCCACCGCAGCAGTGGCCCAAGTGTTTGAACGGGGCAACATGAACTCAGAGCCTGAGGAAGAGGACGGAGGTTTGGAAGATGAGGACGGGGATGATGAAGTTGCAGAGGTGGCTGAGAAAGAAACCCAGGCTGCTTCAAAATATTTTCATGTGCAGAAAGTAGCTCGCCAAGATCCCAGAGTGGCACCCATGTCCAATCTACTTCCAGCACCAGGGCTCCCACCACATGGACAACAAGCTAAAGAAGACCATACCAAAGATGCTTCCAAGGCCTCATCTTCTGTCTCCACAGCAGGACAGCTGAACTGGAATCTGGATGAGCAGCTCAAGCAGAATGGTGGTTTGGCCTGGAGTGATGATGCAGATGGAGGCCGGGGAAGAGAGATCTCTCGAGATTTTGCCAAGCTGTATGAACTGGACGGTGATCCTGAAAGGAAAGAGTTCCTGGATGACCTCTTCGTCTTTATGCAGAAGAGGCGGACCCCCATCAACCGAATCCCCATCATGGCCAAACAGATCCTGGACCTGTACATGCTGTATAAGCTGGTGACCGAGAAGGGGGGCCTGGTGGAGATCATCAACAAGAAGATCTGGAGGGAGATCACCAAAGGCCTAAACCTGCCCACATCCATCACCAGCGCTGCCTTCACCCTCAGCTCAGGACGCAGTACATGAAGTATCTGTATGCCTATGAGTGTGAGAAGAAAGCCTTGAGTTCCCCAGCCGAGCTCCAGGCAGCAATTGATGGCAACCGCAGGGAGAGCCGGCGGCCCAGCTACAGCTCCTCCCTCTTTGGCTACTCACCTCCTCTCCCCACCCAAGATCCGCTTTCCCATCCTTGGGCTTGGCTCCAGCAGTGGCACCAATACCAGTAGCCCTCGAATATCCCCAGCAACCACTCTCAGGAAAGGTGATGGAGCCCCAGTGACAACAGTGGCTGTGCCAAATCGTCTGGCTGTGCCCGTGACCTTGGCAAGCCAGCAGGCTGGTACTCGGACCGCCGCACTGGAGCAGCTGCGGGAGCGGCTGGAGTCAGGGGAGCCTGCTGAGAAGAAGGCGTCGAGGCTGTCTGAGGAGGAGCAGCGCCTGGTGCAGCAGGCCTTCCAGCGCAACTTTTTCAGCATGGCACGGCAGCTCCCCATGAAGATCAGGATCAACGGCAGGGAAGACAGAGCAGAGGCCTCGGCTGCAGCACTGAACCTGACCACGAGTAGCATTGGGAGCGTTAACATGTCTGTGGACATCGATGGCACCACCTACGCAGGTGTGCTGTTTGCCCAGAAGCCTGTGGTCCACCTCATCACGGGGTCTGCTCCCCAGAGCCTCGTCTCACTGTTCACCAAGTCCTACCTCATCCCGGGGCACCCCCAGCGCAGAGCCCTCCACCAGCTGGTCCCTCTGATGGGCAGGACCCAGCTTTCCACTTGCCACTCTCCAGTCGAGAGTGAAGGAAGTTGATGCACAGAATTTACCTCATCTCACGGAGCCCACGTCGACGAGCACCATTTGGCCAGACATTGAGAGTTTGGACGTGTCCGTCTGTCCAGGCTCCATTCAGGTCCTGCTGTACTCCGGGGGCAGGGAGAGGCTAGAGGGGCAGGACAGACAGCGTTGTCCAATCAGGGATTGTCCTGGAGAACTGGGTGGGGGTCTGTGGGTGTCCAGCTTCCTCCAGGGTTCCCCAGCCACCTCCCAGCTCGGGGCACAGTGTATCGACAATCTGTCAGCCGACACAGGGCTGGAGGCCCTCCATTTCCCTCCCCTTTTAATTTATTTCCCTGCCCCTGCCTTCTGCCATGACCCCAGGGCCACTAGTCTCTTCCCCTGTTTTTAAGTCCCATGTGGGGCTGCCAGGAGCCAAGAGCATGCCTTCATGCCCTTCTCTGCTGAGCATGGTTGGTGCCCTTCCAGCCCACTTTGCCTACTGTTAGGTTCCTGGGGTACGGGTCCCTCAAACACAAGTCTTGAATCAGTCCTCAGGGCCCCAGATCCCCCTTCTAATGGTCTGAAGGAAGAGGCTGTGAGGGCAGTTCAGGGCCAGGGCCCACAGGGCATCTGCTGATGGGAAGGCAGAGCCTCGGGGCTGCCCAGCCCTGGCACCTGCTTCACACGGACCATTCTCTGGCCGCCCCCCCAAACCTCATGCTCCCCGCTTGCCCTTATTGTCCTGCTTTCCCAAAAACAGCCCACTCATCCTTTCCCcagccctcttcagccctccccagtcctccccagccttcttcagccttcttcagccttcttcagccctcttcTATTTCTTATGGGGCCATCTTGGCCTCACCATCCCCACACGTGCCGATGTCAGGTTCATTGAAATACCTCAGATTTGTAATTGTTGATGTTTGAGTCTTCAGGAAGTATTTGCATCTCTGAAATCTTTTTTATATGTGTTTTGCTGACTTTTTTTTTTATTTTAAAATTTTTATTGTTGTACACCAAAGAAATGAAAACAGATCACCCCCAAAGCCAAGCAAGTGATTGGGTACCCCGGCCCCTCTGGCCCTTCCCTCAAGCCCAGTGAGGAGGTGGGTGGAGGCATGCAGGGGAGACGACTCAGGGATCACGGGGGCGGGGAGGTGGAGTGGAGAGGCCCGCTCTCACACTGGGTCGGGCCCTGAAACCGTACCAGTTCTGAAGAGCGTTTTCTGCCACACCCCCACCCCCAGCTGACCAGGGAGGCAGAGGACACCTCCCCATCACTCAGCATTCCCAGCTCAGGGCACAGGCAGGCTGGGGTCCTCGCTGGCCTTGCCAGAGGTTGAGCCGCCCCAGGGTATGAGGAGATGAATAACTCCACAGCTCCTCCTGGACCCTGCGCGGGAGCAGGCGGCTCCTGTGCTGTAAAGAAAATTGATTCGCTTGCGGCTCACCTCAGTCGAGGAAGCCCTGGAATGTTCAGCAGAACACCACCACTGTGACATGGGGCTGTGGCAGTGGGAGACACCGCATGTGGCGTGGGTGTGTGTGGCGGCGTGGCTCGCACTCAGTCCTGTGTAGGAGAGGAAAGGGAATCAAAAGCTTGAGCACAAACAGATACCTCAGCCCGGTAAGCTGCAGCTCTGCTCAACTGCGTCTTCTCTCAGCCCTCCACACACGCTCACCCCCACTCCCATCTCCCGAGGGCTGACCTCCTCTGGCCTCAGCCTGCAGGGTGTGGGCAGAGAAGGGCATCTGGGACGTGGTGCCAGTGAGGAGCCCAGTTGGCTGGCACTGGGCCCATTTGAAGGTGTCTCAGACATTTGGCCAGTATGTCTTTCTCAGGGGTTTGGTCACAAAGGATGGACTCTTCCCACCCAGAGGATGCAGGGAAAGCACACTGTGTCTTTCCGGTCATTGGATCCTCTCCCTTTCCCCAGGCAGCTCGCCTGGCCACACCGTTGGAGTGAACCCTCACTGCCCTCAAGGACAACAGCAGGGTGTCACCCAGAGCCGGATGAGGGATGCCAGCAGGTGCCCCCACGAGTGGGGCCTTGGCCCAAGCAGAGCTTCCCCTGAAGGTGCCATCAGCCAGGGCAGCTCTGTCCCCTCCTGCTCTCCATCTTATATGTATTCTAACCAGGAAAAATGTGATAGCACATGGGTAGCCTAGGCAGTGAATAAATACCTCAGATGTCCTCCTGC
>NM_006465.4
CCCGCCCCGGCTGTGGCCCCCGGCTGCGGAGGAGTCCGAGACGCAGCTGCCGCGCCGGGGCCTGAGCTGCCGCCTCCTCCGCCGCCCGAAAACCCGGAGTGCCCCGCACAGGTTTAGACCCAGTGTGCCTGGTGGGCTGTGCCCAGGTTCAGAGTCATGCCACTCTGTGGGTGAAGCTTGAGGCAAAAATGGAGCCACTTcagcagcagcagcagcagcagcagcaacaacagaagcagcCACACCTGGCTCCTCTGCAGATGGATGCCAGAGAGAAGCAGGGCCAGCAGATGAGAGAAGCCCAGTTCTTGTATGCCCAAAAGCTGGTCACACAGCCGACTCTCCTTTCCGCCACAGCTGGGAGACCTTCTGGCAGCACTCCCTTAGGTCCCTTAGCCAGAGTTCCACCCACCGCAGCAGTGGCCCAAGTGTTTGAACGGGGCAACATGAACTCAGAGCCTGAGGAAGAGGACGGAGGTTTGGAAGATGAGGATGGGGATGATGAAGTTGCAGAGGTGGCTGAGAAAGAAACCCAGGCTGCTTCAAAATATTTTCATGTGCAGAAAGTAGCTCGCCAAGATCCCAGAGTGGCACCCATGTCCAATCTACTTCCAGCACCAGGGCTCCCACCACATGGACAACAAGCTAAAGAAGACCATACCAAAGATGCTTCCAAGGCCTCACCTTCTGTCTCCACAGCAGGACAGCCGAACTGGAATCTGGATGAGCAGCTCAAGCAGAATGGTGGTTTGGCCTGGAGTGATGATGCAGATGGAGGCCGGGGAAGAGAGATCTCTCGAGATTTTGCCAAGCTGTATGAACTGGACGGTGATCCTGAAAGGAAAGAGTTCCTGGATGACCTCTTCGTCTTTATGCAGAAGAGGGGGACCCCCATCAACCGAATCCCCATCATGGCCAAACAGATCCTGGACCTGTACATGCTGTATAAGCTGGTGACCGAGAAGGGAGGCCTGGTGGAGATCATCAACAAGAAGATCTGGAGGGAGATCACCAAAGGCCTAAACCTGCCCACATCCATCACCAGCGCCGCCTTCACCCTCAGGACGCAGTACATGAAGTATCTGTATGCCTATGAGTGTGAGAAGAAAGCCTTGAGTTCCCCAGCCGAGCTCCAGGCAGCAATTGATGGCAACCGCAGGGAGGGCCGGCGGCCCAGCTACAGCTCCTCCCTCTTTGGCTACTCACctgctgcggctactgctgctgccgctgccggggcccctgccCTTCTCTCCCCACCCAAGATCCGCTTTCCCATCCTTGGGCTTGGCTCCAGCAGTGGTACCAATACCAGTAGCCCTCGGATATCCCCAGCAACCACTCTCAGGAAAGGTGATGGAGCCCCAGTGACAACAGTGCCTGTGCCAAATCGTCTGGCTGTGCCCGTGACCTTGGCAAGCCAGCAGGCTGGTACTCGGACCGCCGCACTGGAGCAGCTGCGGGAGCGGCTGGAGTCAGGGGAGCCTGCTGAGAAGAAGGCATCGAGGCTGTCTGAGGAGGAGCAGCGCCTGGTGCAGCAGGCCTTCCAGCGCAACTTTTTCAGCATGGCACGGCAGCTCCCCATGAAGATCAGGATCAACGGCAGGGAAGACAGAGCAGAGGCCTCGGCTGCAGCACTGAACCTGACCACGAGTAGCATTGGGAGCATTAACATGTCTGTGGACATCGATGGCACCACCTATGCAGGTGTGCTGTTTGCCCAGAAGCCTGTGGTCCACCTCATCACGGGGTCTGCTCCCCAGAGCCTCGgcagcagcgccagcagcagcagcagcTCTCACTGTTCACCAAGTCCTACCTCATCCCGGGGCACCCCCAGCGCAGAGCCCTCCACCAGCTGGTCCCTCTGATGGGCAGGACCCAGCTTCCCACTTGCCACTCTCCTGTCGAGAGTGAAGGAAGTTGATGCACAGAATTTACCTCATCTCACAGAGCCCACGTCGACGAGCACCATTTGGCCAGACATTGAGAGTTTGGACGTGTCCGTCTGTCCAGGCTCCATTCAGGTCCTGCTGTACTCTGGGGGCAGGGAGAGGCTAGAGGGGCAGGACAGACAGCGTTGTCCAATCAGGGATTGTCCTGGAGAACTGGGTGGGGGTCTGTGGGTGTCCAGCTTCCTCCAGGGTTCCCCAGCCACCTCCCAGCTCAGGGCACAGTGTATCGACAATCTGTCAGCCGACGCAGGGCTGGAGGCCCTCCATTTCCCTCCCCTTTTAATTTATTTCCCTGACCCTGCCTTCTGCCATGACCCCAGGGCCACTAGTCTCTTCCCCTGTTTTTAAGTCCCATGTGGGGCTGCCAGGAGCCAAGAGCATGCCTTCATGCCCTTCTCTGCAGAGCATGGGATGGGGCCCTTCCAGCCCACTTTGCCTACTGTTAGGTTCCTGGGGTACGGGTCCCTCAAACACAAGTCTTGAATCAGTCCTCAGGGCCCCAGATCCCCCTTCTAATAGTCTGAAGGAAGAGGCTGTGAGGGCAGTTCAGGGCCAGGGCCCACAGGGCATCTGCTGATGGGAAGGCAGAGCCTCGGGGCTGCCCAGCCCTGGCACCTGCTTCACACGGACCATTCTCTGACCGCCCCCGCCAAACCTCATGCTCCCCACTTGCCCTTATTGGCCTGCTTTCCCAAAAACAGCCCACTCATCCTTTCCCCAGCCCTCTTCAGCCCTCCCCAGTCCTCCCCAGCCTTCTTCAGCCTTCTTCAGCTCAGCCCTCTTCTATTTCTTATGGGGCCATCTTGGCCTCACCATCCCCACACGTGCCGATGTCAGGTTCATTGAAATACCTCAGATTTGTAATTGTTGATGTTTGAGTCTTCAGGAAGTATTTGCATCTCTGAAATCTTTTTTATATGTGTTTTGCTGACTTTTGTTTTTTTTTTATTTTAAAATTTTTATCGTAGCACCAAAGAAATGAAAACAGATCACCCCCAAAGCCAAGCAAGTGATTGGGTAACCCGGCCCCTCTGGCCCTTCCCTCAAGCCCAGTGAGGAGGTGGGTGGAGGCATGCAGGGGAGACGACTCAGGGATCGCGGGGGCGGGGAGGTGGAGTGGAGAGGCCCGCTCTCACACCGGGTCGGGCCCTGAAACTGTACCAGTTCTGAAGACCGTTTTCTGCCACACCCCCACCCCCAGCTGACCAGGGAGGCAGAGGACACCTCCCCATCACTCAGCATTCCCAGCTCAGGGCACAGGCAGGCTGGGGTCCTCGCTGGCCTTGCCAGAGGTTGAGCCGCCCCAGGGTATGAGGAGATGAATAACTCCACAGCTCCTCCTGGACCCTGCGCGGGAGCAGGCAGCTCCTGTGCTGTAAAGAAAATTGATTCGCTTGCGGCTCACCTCAGTCGAGGAAGCCCTGGAATGTTCAGCAGAACACCACCACTGTGACATGGGGCTGTGGCAGTGGGAGACACCGCGCGTGGCGTGGGTGTGTGTGGCAGCGTGGCTCGCATTCAGTCCTGTGTAGGAGAGGAAAGGGAATCAAAAGCTTGAGCACAAACAGATACCTCAGCCCGGTAAGCTGCAGCTCTGCTCAACTGCGTCTTCTCTCAGCCCTCcacacacactcacccccactcccacacacatacacacacacacacacatacCCCATCTCCCGAGGGCTGACCTCCTCTGGCCTCAGCCTGCAGGGTGTGGGCAGAGAAGGGCATCTGGGACGTGGTGCCAGTGAGGAGCCCAGTTGGCTGGCACTGGGCCCATTTGAAGGTGTCTCAGACATTTGGCCAGTATGTCTTTCTCAGGGGTTTGGTCACAAAGGATGGACTCTTCCCACCCAGAGGATGCAGGGAAAGCACACTGTGTCTTTCCGGTCATTGGATCCTCTCCCTTTCCCCAGGCAGCTCGCCTGGCCACACCGTTGGAGTGAACCCTCACTGCCCTCAAGGACAACAGCAGGGTGTCACCCAGAGCCCGATGAGGGGTGCCAGCAGGTGCCCCCACGAGTGGGGCCTTGGCCCAAGCAGAGCTTCCCCTGAAGGTGCCATCAGCCAGGGCAGCTCTGTCCCCTCCTGCTCTCCATCTTATATGTATTCTAACCAGGAAAAATGTGATAGCACATGGGTAGCCTAGGCAGTGAGTAAATACCTCAGATGTCCTCCTGCAGCAAGTGTCTATATGTTGTGGTTATTTTCTATCTTACATGTTCTCGAATGTTTATATTTCAATAAACCTCTACCTCTTCACACAA

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