Retrocopy Name | RBM22P1 |
|
Species | Homo sapiens | |
Coordinates (hg38) | chr18:27418620-27420486 UCSC | |
Coordinates (T2T) | chr18:27612654-27614520 UCSC | |
Coordinates (hg19) | chr18:24998584-25000450 UCSC | |
Strand | - | |
Parental Sequence | NM_018047.3 | |
Parental seq. overlap | 744 bp | |
Parental seq. overlap (%) | 25.1% | |
Genomic Region |
Intergenic |
|
Retrocopy Summary | RBM22P1, located on chr18:27418620-27420486, is a retrocopy of the parental gene RBM22. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | RBM22 |
Full Name | RNA binding motif protein 22 |
Also known as | Cwc2|ZC3H16|fSAP47 |
Coordinate | chr5:150690792-150701062 |
Strand | - |
Gene summary | This gene encodes an RNA binding protein. The encoded protein may play a role in cell division and may be involved in pre-mRNA splicing. Related pseudogenes exist on chromosomes 6, 7, 9, 13, 16, 18, and X. [provided by RefSeq, Mar 2009] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | RBM22P4 |
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Bonobo | Pan paniscus | RBM22P5 |
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Gorilla | Gorilla gorilla | RBM22P5 |
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Orangutan | Pongo abelii | RBM22P5 |
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Gibbon | Nomascus leucogenys | RBM22P3 |
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Green monkey | Chlorocebus sabaeus | RBM22P5 |
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Crab-eating macaque | Macaca fascicularis | RBM22P4 |
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Rhesus | Macaca mulatta | RBM22P3 |
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Baboon | Papio anubis | RBM22P5 |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>RBM22P1 |
AGCAGTGTGCTGCTTTTCCACAGGGCAGGCTGCAGAAGTGGCTACTGAGAAGTCCTTTAATAAATTGACTGTCAATGGCTGCAGGCTCAAGGTAAAATGGGGAAGATCACAAGCAGCCAAAGGAAAAGAAAAAAAGGACAGAACCACAGACTCTGGGATCCAGCTAGAGCTCATTCCAGCTCTGCTAGGAGCTCCTTCTCCTGCAGCAGCAGAAGATGCATCTGCCAACTCCTTCCACCTACTCTCAAGCGGCTCTCCAGCTATGGTGAACATTGCCCCACCTCCACCCCCAGTATTTGGGCTACACACATTCTACCCGACTGGACCACCTGCTCATTTCAAGAAGGCTCCAGGATCAATCTACTGTCTCAGGACCACCAGAGGATGGGAGCTCATGCCAGAAAACACAGCACTCCTGGCACGTTATCACTGCTCTGGTTCTCTATGGGAAAAAAGGGGCACTTAAAAATCTCAATCAATGAATCTTGGAATGAATATACTTTTTTGTTTCTTTGTAGTTTCCTTGGCATCTGAATGTGTTCAGATATGTGCAGGTGAGAAATGACAGTCATGCTTTCCTATTGCATATTCAAAGCATCAGTGGACCTCAAATAAGCTGCCATCAAAACATCTGGTTGCTATGATATAGCCTGACTAATAAAACCTACTGCCTGTTCCCCCGGTCCTCTCTCCCACCTCCAAAGCTACCACTGCCTCCAGATGCTTTCAAGATGGTGACCTCTCTGCGTTTCCACACCTACAGCAGGAAGAACTGGGAAGAAGCAGACTTCCCCATTCTGTGCTAGGCATGTCTTGCAGAAAACCCAGATATCCAAATAACCAAGGAAAAGTGTGGGAAGGAATGCAAAATCTGTGCCAAACCATTCAGTGTTTGGCTGATGCTCTGGGGTTCACATGCATTTCAAGAAGACTGAAGGGTACCAAAGCTGCAGCAAATTAACTAATTTCTGTCAGATCTGCCTCTTAGTGGCAGAGTATGGCCTGTCCATCCAGGTTCATGATGCAGGTCTATCCTTAAAAGATTACATGCCAAAGTTGGAGGTGAGCAAAAGTACTCCATTCAGAATATGGAAAGAGAGGTTTCTAACTCTGATGGAACACAGCCAGTTGGTCTGCTGGGAAAAGTCACATCTAGCAGTGACATGCTGAACAATCTGGCCCAGACCATATCCTATCACCTAAAGGCCCACATTTGCTCCTTCTGGATGAAAGGAGAGAATGAGAGAGGAGGCGTGTCCATACAGGCATGAGAGGCCTACAGATCCAGATAATACCCTTGCTGATAAGCATATTAAAGACAAGAATTATGGAAACAATGATGCTGGAGCTGGAGCATAGAAGCTTCTAAAGCAGGCTTTAACGATGCCTCATCTAGATCCACCAGAGGATAAGGCTATCACCACACTATATGTTGATGGTCTGGAGGATATCATTACTGAGACCAAGCTAACAAATCATCCCTACCTATGTAGAGAGATCTGGATGATCACTGTACAGAGACAGCAGTGTGCttttatttttatttaattatttttat |
>NM_018047.3 |
AGCCTCGGGGCTTGACGGGATTGTGGCGGTCCTCTCTCCCAATTCGGAAGCTACAGCTACCTCCGGACGCTCTCAAGATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAGGATGCGGACTTCCCCATTCTGTGCCAGACATGTCTTGGAGAAAACCCATATATCCGAATGACCAAAGAAAAGTATGGGAAGGAATGCAAAATCTGTGCCAGGCCATTCACAGTGTTTCGCTGGTGCCCTGGAGTCCGCATGCGTTTCAAGAAGACTGAAGTGTGCCAAACCTGCAGTAAATTGAAGAATGTCTGTCAGACCTGCCTCTTAGACCTAGAGTATGGCCTGCCCATCCAGGTTCGTGACGCAGGATTGTCTTTTAAAGATGACATGCCAAAGTCAGATGTCAACAAAGAGTACTATACACAGAATATGGAGAGAGAGATTTCTAACTCTGATGGAACACGGCCAGTTGGCATGCTGGGGAAAGCCACATCTACCAGTGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGGAATCGACCCCACATTTGCTCCTTCTGGGTGAAAGGAGAGTGTAAGAGAGGAGAGGAATGTCCATACAGACATGAGAAGCCTACAGATCCAGATGACCCCCTTGCTGATCAGAATATTAAAGACCGTTATTACGGAATCAATGATCCTGTAGCTGACAAGCTTCTAAAGCGGGCTTCAACAATGCCTCGGCTGGACCCACCAGAGGATAAAACTATCACCACACTATATGTTGGTGGTCTAGGTGATACCATTACTGAGACAGATTTAAGAAATCATTTCTACCAGTTCGGAGAGATCCGGACGATCACTGTTGTGCAGAGACAGCAGTGTGCTTTCATCCAGTTTGCCACACGGCAGGCTGCAGAAGTGGCTGCTGAGAAGTCCTTTAATAAGTTGATTGTAAATGGCCGCAGACTGAATGTGAAATGGGGAAGATCCCAGGCAGCCAGAGGAAAAGAAAAAGAGAAAGATGGAACTACAGACTCTGGGATCAAACTAGAACCTGTTCCAGGATTGCCAGGAGctcttcctcctcctcctGCAGCAGAAGAAGAAGCCTCTGCCAACTACTTCAACTTGCCCCCAAGTGGTCCTCCAGCTGTGGTGAACATTGCTCTGCCACCGCCCCCTGGCATTGCTCCACCCCCACCCCCAGGTTTTGGGCCACACATGTTCCACCCAATGGGACCACCCCCTCCTTTCATGCGGGCTCCAGGACCAATCCACTATCCTTCTCAGGACCCTCAGAGGATGGGAGCTCATGCTGGAAAACACAGCAGCCCCTAGCACCTTGTCACCACTCTGGGGCTCTGTGGAAGAAAGGGCACTTAAAACTCCCAGTAAATCTTGGAATAAATATATTTTTCCTTCCCTTGTAGTTTCCATGGTAGCTGAATGTGCTCAGATGTGAGCAGTCAGAGACTGACAGCCATGCTTTCCTATACTTGTTCAAAGGATCGATGGACCGTAAATAAGCTGCCATTAACACATCTGGTTACTGCTGTAACATGACTAATAAAACCGAACGCCTGTTCCCCTTACCCGTGTGGGGGACACGCAGATGAGTGAATTGGAATGTCCAGCAGAGTTACCCTCCCAATTATATGTTCATTTTGTATATTTTTTGGTCGGGGGAAAAATTGACCTGCAGTAAAAAAACCTTTGACCATTTTTATGTCCATTGGATACTTTCCTTTTTATCATCTTAAAAAAAGATAACTAGTACTAATCATTGTAGTGGCCTAAGTGTGATTTAACTCTTGAAGTCACACCCTCCGAAAGATGAGTAGAAACCAGCACCAGCACAGCCCAGATCTTCTCTTTCCTCTCCTTTTCCTCATTTATTCCTAAAGGAATCTGACCATTTTACGTCTCTACGGCCCAAAAAAAGACAAAAATAAAAATTCCTTTTTATTCCTGTCAACTGGATGGAAACACAAATTTCATGGAGCTGTGTACCATCGAAGAAACCTGGTGTCTGGCATGAAATTACTGTAAAGAACTTCCTGTAAAACACGTTCTTTAACAAACTGAAATGAAAAGCATTGGAGCGTCTGAATGAAAGACGTGACCTCCTGCTGGGACTCTGATGGTCTTCAGCATTCACCTTCGTGTGTCTTCAGTGTCTCATTGTCATCCCTGCTTCTGTTTGGTCTTAGAGTGTTTGGATATAACTGAATTGTAGATGGTAAAGGAAATTTGATGTGTTTTTTGTTTTTAAATAATTAAAACGGGTCAATTTTTCA |
PMID - Link | Title |
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