Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS27LP28
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr1:84635991-84637113  UCSC
Coordinates (T2T) chr1:84476391-84477513  UCSC
Coordinates (hg19) chr1:85101674-85102796  UCSC
Strand -
Parental Sequence NM_015920.4
Parental seq. overlap 320 bp
Parental seq. overlap (%) 5.2%
Genomic Region Intergenic
Retrocopy Summary RPS27LP28, located on chr1:84635991-84637113, is a retrocopy of the parental gene RPS27L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS27L
Full Name ribosomal protein S27 like
Also known as -
Coordinate chr15:63148249-63157477
Strand -
Gene summary This gene encodes a protein sharing 96% amino acid similarity with ribosomal protein S27, which suggests the encoded protein may be a component of the 40S ribosomal subunit. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes RPS27LP1
Bonobo Pan paniscus RPS27LP1
Gorilla Gorilla gorilla RPS27LP1
Orangutan Pongo abelii RPS27LP1
Gibbon Nomascus leucogenys RPS27LP5
Green monkey Chlorocebus sabaeus RPS27LP4
Crab-eating macaque Macaca fascicularis RPS27LP1
Rhesus Macaca mulatta RPS27LP1
Baboon Papio anubis RPS27LP1
Golden snub-nosed monkey Rhinopithecus roxellana RPS27LP2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS27LP28
CTCAGACAGTGGATCTTTGTGTAGGTTCTTCAACAGTGTTGTGCCAGCCTACAGGATGAAACACCAAGCTCACAGAAGAGTGTTCATTTAAAAGAAAGCAACACTAATGATCCACACAACATCCTGAATTTGTTATGTCCCAGAAAGGCTTATCATAAGTTCAGTAATTCTGGTTCATCTACCAAGATAAGTAAGTGTGTTTGATTTTGTAAGGTATGCAGCAGTGATCTCCTATTTTGGTGTTTTTCAATACAATTTTGGTTATGTGCAAATATTCAAATTCTTACTTTGTGGATATAACATGTCCTAGTTGCCACAAGATTACCATGTTTTTCAGCCATGCCCAGATCAACATGGCCTTTGGCTAGAGATTTACTGCATCCATCCTTg
>NM_015920.4
GCAGATCGCTTGCAGCTTGCTAGCTGTGTGGGCTGGGAGGTCTGGTAGGGCTGAGCTTGCAAGAGGATCAACATGCCTTTGGCTAGAGATTTACTACATCCGTCCTTGGAAGAGGAAAAGAAAAAACATAAAAAGAAACGCCTAGTACAAAGTCCAAATTCTTACTTTATGGATGTAAAATGTCCAGGTTGCTACAAGATCACCACGGTTTTCAGCCATGCTCAGACAGTGGTTCTTTGTGTAGGTTGTTCAACAGTGTTGTGCCAGCCTACAGGAGGAAAGGCCAGACTCACAGAAGGGTGTTCATTTAGAAGAAAGCAACACTAATGATTCAAACAGCTTCCTGAATTTTAATTTTGTGTTGTCTCACAGAAAGCCTTATCATAAATTCCATAATTCTAATTAATTTACCAAGATAATGTAATTACATTTGGTTTTGTAAGGTATACAGCAGTAATCTCCTATTTTGGTGTCAGTTTTTCAATAAAGTTTTGATTATGGGCAAATCCCCTCTTTTTCTTTTTTTAAAATATATTTGAGTATGCCATACATTTATATATATGGTGTATATGAATTTGGTTTAAACATTTTAAAATTTATTCTGATTAGTTTGTGTCtttttttttttttttgagagagagagtcctgctctgtcactcaagctggagtgcagtggtgcgatctcggctcactgcaacctccgcctcccaggtccaagcaattctcttgccttgtcctcccaagtagctgggattataggcacacaccaccatgcctggctaatttgtgtctcattttcaagagtagaaacCCTAAATATTTTATTTTCATTCCTTTTCCAAATTGCTATGAATGGGATTAAAGGATTACAGATGTAAAGTCTATTATTTGTGAATTCTAAATGTAGTTCTGCTGTTGTACCTGTGGAAACATCTTAAAGAAGTACATATTTtgcacgtcctgcacgtgtaccccagaacttaaactataattaaaaagaaTAGTTTCAAAAAAATACATATTGATCACAGTGTAATGCCTTGGATTTATGTGGCCTTGCTATACTACTATATAATTTAGGACAGTAACTGCTAGCTGGGGTGTGAGTTATTTATTGGAAGCTCCTTTTTAGGGTAGAAAATTTGAGGAGAAATCTGAAGTGGCATGATTTACCCGCAGAAGTCCTGGTTGGGGATAGTAGATGGTGTTGAATTCTCTGGCCCAGATAGGTGAGCACTCCTGACTACAGATGTGTGTTGAGTGGTTCTGGTGCCTGCCTCATTGTCATTTTCATAGTTTATGAAGTAATCCTGGGGAGCTGAGACGGGGAGTGTATCCACTCACTATACAACTCCTCATTGGACTAGGAAGATAGTCCAGTTTCTACTCTGCTTCTATTTGATTTGTTACCTTGTGGCAGGTATTTAAAACAGGCATTTCCTATCAACAGGTAGGCCTCTAATGTGAGCAACTGATCCTCTTACATACTGCTTAAATCAGAGAACTGTTGCACAAGAACTAAAGAATGATGGCAAGTTTGGGGTGTATATAGTTGTATAAGGAAggctgggcgcagtggctcacacctgtaatcccagcactttgggagcctgaggcaggtggatcacctgaggtcgggagttcaagaccagcctgaccaacatggaaaaaccccgtctctactaaaaatgcaaaattagctgggcgtggtggtgcatgcctgtaatctcagctaactcgggaggctgaggcaggagaattcgcttgaacctgggaggtggaggttgtggtgagccaagatcgtgccattgcactctagcctgggcaacaagcacgaaactccgtctcaaaaaaaaaaagaaaaaaaaaatatatatatatacatatatatgtagatGACCcagagattctcagacttttagtttctgacatcattagaatctcagtaatttttttcaggccattccttggccaaaagaaatacctaacagttacatttattaacttatgttctaacaactctagtagccatttgaaaaaaactatacacacacaagagcaaaagtgatgtgatgatttttttaaaaatagagacagtgtcttggctctattgcccaggttggagggtcatagctcattgtgacctcaaactcctgggctcaagcaagcctcccacctctgcctcctgagtagcggagacttcaggcacgtgccaccacgcccgcctaatttttttgtagagatggggctctggctgtgttgcccaggctgtaaggaactcctggcctcaggtgatctgccttggcctaccaaagtgctgggattacaggtgtgagccactgtgcccagcctgatgtgataatttttatctcatccttaaatcatcacagttactaatggaatgtgtgtgccttttgggctccatacagtttctcaaaattgaaatcagattggacaccattgtccttatttcttccacattgatttttgcatggtgctttttgtcatagcagtggctccaaacccagcttcacaaggataggatgccatcaaagggaatgtagtgccatatcatattgaaactgaacttcctggaactagtagtttatacaaaagatgcgtcagtgtcaagtgtTTTTCCTGAGGTACTCCAAGGCACTTCAGCTTGCACAGTTTAGGATACTTGGCTATAAGGAGAGACAGTGGGATGACAGCTTTTGATGAGAAGGAATCAAACCTATGATGAGGACTAATCTAACAAACCCTGAAAATTCCCTTGGAAGTATTTTTTAAAAAAGGATTATACTTTAAAGACCACATCTAAGggctgggcgcggtggctcacacctataatcccagcagtttgggaggctgaggcaggcagatcacttgcagtcaggagttcgagaccagcctggccaacacagtgaaaccccgtctctactaaacatacaaaaattagctgggcgtggtggtgtacacctgtagtcccagctacttgggaggctgaggcacaagaattgcttgaaaccaggaggcagaggttgcagtgagccaaaatcgcaccactgcacttcagcctgggtgacagcgtgaagctgtgtctcaaagaaagaaCACATCTAAGGATTTACATGGCATTGGGAAACGAATGGTGTATTAAGTTTTACTTTATTATTAATCTAGATGGTATTACTGGTTTTGAAAAGTGCTGAATAGGACACCAGGACTTTCCCAAACTTCAGGGTCAGCCACATACATTATTATATACTGAATGTTTTAAATATTATTTATATTGACTTCATATTTTAATGTAAATATATTTGTAAAGGAAACCTTCCATAAACTTAATATAAATTTATTTTTAGGGGAAGGCTTCCTAAATGGAAAAACCAGTTACATAAAGATAGCTAAAAATAggccgggcgcagtggctcacgcctataatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggagatcgagaccaccctggctaacacggtgtaaccccgtctctactaaaaatacaaaaaattagccgggcatggtggtgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccaagatcacgcctctgcactccagcctgggtgacagagcaagactccagctcaagaaaaaaataaataagctaaaaataaaaTGAAATTCTTGGCTTCTGGCCTGATGAGATGACAAATGGTTTTGTGTCTGGTCGTTCCTGTAAGTCATCTGATAAAGCTCTAATTCCTTTCTGTTTTATTtttctggagatatgattcagatactataaaatccaaacttctgtgatgtaaaagtcagtagtttttactatatttacaaggttgtgcaaccattactactgtctaatcccagaccattttcatcaccttagaaagaaacttcatacctatcagcattcactccctattcttccctcctctcagccattggcagccactaagctacttttgtctccatggatttgcttcttctcaatatttcatataatgctatttcgtataaatggaatcacatggtatgtagcttctgtatgtttcacttagcataatgttttcaagggctgtccatgctgttgcatgtatcaatatttcattcctttttttgacaatattctgtgtaataatatacaatgtttatccattcatcagttgatagatacttagagtgttttcactttttatttatttatttttgagatggagtcttgctctgttccctaggtggagtgcagtggcgtgatctcagctcactgcaacctcctccacctcccaggcttgagtgaccctctggcctcagcctcccgagtagctggaactacaggcacgtgccaccacaccccgctaattttttgtattttttgtagagatggggtttcgccatgttgcccaggctggtcttgaactccttgcctcaggccatccgcccacctcagcctcccaaagtgctggcattacaggtgtgagccactgcatccggccAAATAAAGTATTcttaatgacatctgcaaaatccattttgctatgtaaggtaacatattcgtaggttctggggattagggtgtgggaatctttagagggccattattctgctaccacaGAATATAAAGTTGTAAAATTCTACCCCATATTTGGAAACTGAGATTCTTAAATTATGTCTTTGTAAttctcttttttctttttctttcttttttttttttttttttgagacggagtcttgctccgtcgcccaggctgaagtgcagtggcgcaatctcagttcaccgcaagctcctcctcctgggttcacgccattctcctgcctcagcctccagagtacctgagactacaggcgtgtgccaccacgccgggctaatttttttaaagtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctgctgacctcgtgatccgcctgcctcggcctctcaTGTCTTCGTAATTTTCCATGGAAAAAAACTTAAATCTTTGGAAGGAATAGAGTACATTATTGCATTTTACAAAGAAAAGGATAACTTTTATAGAATAATGACCTTGTATTCTTTTAGGATTTTACAGCTACTTTTTCACAACTATAGGCATAGAAAATGACATCAGGggccgggcgcggtggctcacgcctgtaatcccaacactttgggaggcccaggcggcggatcacgaggtcgagattgagaccatcctggccaacatgatgaaaccgcgtctctgctaaaaatacaaaaattagctgggcgtggtgtcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcggagcttgcagtgagcccagatcgtaccactgcactccagcctgggcgacagagcaagactgtctcagaaaaaaaaaaaaaaaaaaaaaaaagaaaTGACATCAGGTCATGGTGTTTGCTATTGATCGACACTTAAATAGCCTTTGAATTTTGTTTCAAAGGAGATGCCAGAATTGCAAATTTTCTCTGCTGATTTGTGTCCTACTGATTCTGGCTCGCTTTCCCCCTACACTACTAGGGCTACTCTCACTTTCACACCTAGCAAAACTTCACCTTTCAAAGAATTTAGGCAGAATAGTCCTAATTTAGTTAATAAGCTTTCATTTTAAATCTTAGGgaagcagtgttagtttcagttattctataggaacagaaattggagctgccacagccttttgaaccagagcccggcagaccctcagcttcagccctgctcagtgttttgtgtctatgaaagtctttttaattttctcattacacattttatatatcatgctatgtatttagaacagaggggttgtgtAAGATTATGACTCTATGTTCTTTATCTTGTCTTTGTATTAATTTGAAGTTGTGTTTTTTCTTTATTTGTAGCCAACTAATTAAAATACCAACATATTTATTTTTATTCATTTTTATGTGACAAACTTTTAAACTGAAGACTGCATCAATAAAATTGCATGCCATTAAATATGA

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