Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name SMUG1P1
Wait
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr18:49650379-49651371  UCSC
Coordinates (T2T) chr18:49848448-49849440  UCSC
Coordinates (hg19) chr18:47176749-47177741  UCSC
Strand +
Parental Sequence NM_001351262.2
Parental seq. overlap 795 bp
Parental seq. overlap (%) 29.5%
Genomic Region Intergenic
Retrocopy Summary SMUG1P1, located on chr18:49650379-49651371, is a retrocopy of the parental gene SMUG1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SMUG1
Full Name single-strand-selective monofunctional uracil-DNA glycosylase 1
Also known as FDG|HMUDG|UNG3
Coordinate chr12:54180366-54188985
Strand -
Gene summary This gene encodes a protein that participates in base excision repair by removing uracil from single- and double-stranded DNA. Many alternatively spliced transcript variants exist for this gene; the full-length nature is known for some but not all of the variants. [provided by RefSeq, Aug 2011]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SMUG1P1
Bonobo Pan paniscus SMUG1P1
Gorilla Gorilla gorilla SMUG1P1
Orangutan Pongo abelii SMUG1P1
Gibbon Nomascus leucogenys SMUG1P1
Green monkey Chlorocebus sabaeus SMUG1P1
Crab-eating macaque Macaca fascicularis SMUG1P1
Rhesus Macaca mulatta SMUG1P1
Baboon Papio anubis SMUG1P1
Marmoset Callithrix jacchus SMUG1P1
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Related Sequence

>SMUG1P1
GCATGAGCCAGCAgAGTTTGGCTCAATGCTGAGCTGAACCAACTGCAGTTTTTGGAGTCTGCACGCATCATTCACAATCCCGTGGAGTATTGTATAAGAGCCACATCGTAACTTTGTGACTCGCTGCTGCCAGGGCCCCAAGGAAGTGCTCTTCCTGGGCACGAACCCAGGACCTTTTAGCATGGCCCAGACATGAGTGCCCTTTGAGGAAGTGAACATGGTCTGGGACTGGCTGGGCATTGGAGGGCCTGTGCTAACCCCTCCCCAAGAGCACTGTCTTAGCTGGGACTGGGGTGCTGGGACTGGCGTGCTCAGTGAGAGGTGAGTGGTGCCCGATTCTGGGGCTTTTCCAGAACCTCTGTGGAAAGCCTGAGGTCTTCTCCTTTCACTGCTTTGTCCACAATCTGTGTTCTCTGCTATTCCTGGCTCCCAGAGAACACAACCTCACTCCTGCTGAGCTTCCTGCCAAGCAGCAAGAACAGCTTCTTGGGATCTTAGTGTCCCCTCTGCCGGCAGGTGCGGCGGCTGGGGGTTCGGCTGGGGGTGGGAGTGGCCCGGCTGGGGCAGTAGTGGGCGCGAATGGCTTTGGCAGGCCTGATGCCAGAGGTCCAGGTGGAGGGGCTCCTGCATCTCTCTCCCCGTAACCCACAGGAAAACAGGGCTAATAGGCAGTGACCAAGTGAGTTGACCAAGTGAGTTGGGGCTGCTGCCGCGGCTATGGAAATGAGTGCCCCTGGGGCCTGGCATGGGACACATTCAAGGCCTCCAAGTCACTCTTGGGCAAGCAGATAACAACACACCCTGGACTGAAGCCAGAGGTCCTCCTGGGCTCCCTGCTTGCCGGGAAACATACCCTTCGATCTGTTGAACTGTCTTCCAACCTGCTGTGGCAGTTTTGCCCCACTCCTGTTTGCCGTGCTGAGTCCTGCTTTC
>NM_001351262.2
AAAGGAACCGGAAACGGGATGGGGAGCTGGACCAGgctggagtgcaatggcgcgatctcagctcactgcagcctccgcctcccgggttcaagcgattcttctgcctcagcctcccgaGTGACAGCGGCATGGACATATGCCCCAGGCTTTCCTGCTGGGGTCCATCCATGAGCCTGCAGGTGCCCTCATGGAGCCCCAGCCCTGCCCTGGAAGCTTGGCTGAGAGCTTCCTGGAGGAGGAGCTTCGGCTCAATGCTGAGCTGAGCCAGCTGCAGTTTTCGGAGCCTGTGGGCATCATCTACAATCCCGTGGAGTATGCATGGGAGCCACATCGCAACTACGTGACTCGCTACTGCCAGGGCCCCAAGGAAGTACTCTTCCTGGGCATGAACCCTGGACCTTTTGGCATGGCCCAGACTGGGGTGCCCTTTGGGGAAGTAAGCATGGTCCGGGACTGGTTGGGCATTGTGGGGCCTGTGCTGACCCCTCCCCAAGAGCATCCTAAACGACCAGTGCTGGGACTGGAGTGCCCACAGTCAGAAGTGAGTGGTGCCCGATTCTGGGGCTTTTTCCGGAACCTCTGTGGACAGCCTGAGGTCTTCTTCCATCACTGTTTTGTCCACAATCTATGCCCTCTGCTTTTCCTGGCTCCCAGCGGGCGCAACCTTACTCCTGCTGAGCTGCCTGCCAAGCAGCGAGAACAGCTTCTTGGGATCTGTGATGCAGCCCTCTGCCGGCAGGTGCAGCTGCTGGGGGTGCGGCTGGTGGTGGGAGTTGGGCGACTGGCAGAGCAGCGGGCACGACGGGCTCTGGCAGGCCTGATGCCAGAGGTCCAGGTGGAAGGGCTCCTGCATCCCTCTCCCCGTAACCCACAGGCCAACAAGGGCTGGGAGGCAGTGGCCAAGGAAAGATTGAATGAGCTGGGGCTGCTGCCACTGCTGTTGAAATGAGTGCCCTTGGGGCCTTGCATGGGACACATTCAAGACCTCGAAGTCATTCTTGGCCAAGCAGATGACAACACATCTCCTGGACTGGAGCAAAAGGTCCTTCTGTGCACCCTGGTCGCTGGGAAACGTATTCTTTGATCTGTTGAACTGTCTTCCAACCTGCCATGGCAGTTTTGACACTACTCCTGTTTGCCCTCCTGATTCCTGCTTTCTTTACCTTTTAACATTGCCCCTTTCAGGGGACCCCACTTTGTAGGGAATCTGCAGAAGGTGTGCTTTTGCACTTGCAGACTGCTCTACCTCAGTGTTTCCTTGGGAGACTTTATTCAGCTGAGAGTGCCCTAGACAGTAACTTCTAAGGTCACGTTTACTATTTCAGAGGAAATATCTTGCCAGGATACCTACCCATCCTTATAGAACAGTTACCTTTAGCTGACCCCTTTCCTCACAGGGACCAAGACAAAGCATGGGACATGAAATTAAGAGTGAACTTCTTATGGGAGGCTGCAGCTGGATCAGAGGAAAAATCCAGTGTGACAGAGTGCAagtcagaagacctggcttttcatcccagctttgaaacttggaactttttgattgacaaattaataaacctctctatgcctcaggctcctcatctgtaaaacagggatgcctaccttatggggttggtgtgaggattaactgagatcacacttgaaagtgccttgcatgggcttggcatgtgggtgctcattacatagtCTTCTTGTTTTCTTGCCTCTGGGTTGAGGATTCACAGCACTGCACTACAAGGGTAGCCCCTCTCCATTCTGGATACCTTGCTAGGAGAGAGTCTGGGCTTCCACCTGCGGCCAGGGTGAAGGGAAAATTCTTGCCATGTCAGAGATGGATCAATGACTATGAAAAAACTAGCCTGTGATTTTTTTTCACTCTAAGCATTAAGAGCTCCTAAAGCCTTTTGTCTTGTTACTTTTTTCCCCCTCTTGCATGCTAGAGGTGGAAGGTAGTCATTTAGATTTCCCCCCTCTTCCCTCTTCATTGTTGGCCAGGGGTTCTCTTGGGCAGCTGGGGGAAGGATGTAGTAGAtctctcttttttttttttttttgagatggagtctcatgctgttgcccaggctggagtgcagtggcatggtctcagttcactgcaacatctgctttcccggttcaagtgattctcctgcctcagcctcctgtatagctggaattacaggcatgtgccaccacgcctggctaatttttgtatttttattaaagacagtgtttcaccatgttggccaggctggtctcaaactcctgacttcaagtaatccacctgtcttggcctcccaaagtgctgCTGCCTGGCTGGATGTAGCAGATCTCCAATTGCCTTACCAAACCTGCAGGGTCTCTGTTAAGTGTCTGTTAGGGGTCTTATATGATACTCTGGACACCGTGAGAAACAGGTGATGGGGCAGATGGGAACCTGGTATCCAACTCATTTTTTATGTCTGCTGAATGGTTGACTGGGTGCCCCTTTGGTAAGGGCTGGGAAAGTGAACCAAGTTGGGAGCAGAGCAGGTCTTGAGACCACCTTAATGAGGAACACATGGTCTACTTCCTATCTCCTGGGACACAGGTCATTTCCAGCTTCCAGAATTAGTAAGATTTTTCATATAAATCCTCCCCTACTTCATTGtataataaagaatttggcctttgtcttca

Publications

PMID - Link Title
No publications available for this retrocopy