Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name MRPL37P1
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Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr18:58690680-58692290  UCSC
Coordinates (T2T) chr18:58891825-58893435  UCSC
Coordinates (hg19) chr18:56357912-56359522  UCSC
Strand +
Parental Sequence NM_016491.4
Parental seq. overlap 944 bp
Parental seq. overlap (%) 62.9%
Genomic Region Intragenic (MALT1)
Retrocopy Summary MRPL37P1, located on chr18:58690680-58692290, is a retrocopy of the parental gene MRPL37. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MRPL37
Full Name mitochondrial ribosomal protein L37
Also known as L2mt|L37mt|MRP-L2|MRP-L37|MRPL2|RPML2
Coordinate chr1:54200167-54225489
Strand +
Gene summary Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes MRPL37P1
Bonobo Pan paniscus MRPL37P1
Gorilla Gorilla gorilla MRPL37P1
Orangutan Pongo abelii MRPL37P1
Gibbon Nomascus leucogenys MRPL37P1
Green monkey Chlorocebus sabaeus MRPL37P1
Crab-eating macaque Macaca fascicularis MRPL37P1
Rhesus Macaca mulatta MRPL37P1
Baboon Papio anubis MRPL37P1
Golden snub-nosed monkey Rhinopithecus roxellana MRPL37P2
Marmoset Callithrix jacchus MRPL37P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Adipose SubcutaneousMuscle SkeletalArtery TibialArtery CoronaryHeart Atrial AppendageAdipose VisceralUterusVaginaBreast Mammary TissueSkin Not Sun ExposedMinor Salivary GlandBrain CortexAdrenal GlandThyroidLungSpleenPancreasEsophagus MuscularisEsophagus MucosaEsophagus Gastroesophageal JunctionStomachColon SigmoidSmall Intestine Terminal IleumColon TransverseProstateTestisNerve TibialSkin Sun ExposedHeart Left VentricleBrain CerebellumWhole BloodArtery AortaPituitaryBrain Frontal CortexBrain CaudateBrain Nucleus AccumbensBrain PutamenBrain HypothalamusBrain Spinal CordBrain HippocampusBrain Anterior Cingulate CortexOvaryBrain Cerebellar HemisphereLiverBrain Substantia NigraKidney CortexBrain AmygdalaCervix EctocervixFallopian TubeCervix EndocervixBladderKidney Medulla00.20.40.6
log10(TPM+1)

Related Sequence

>MRPL37P1
ATTCACGAGCAGCCACCATACAAAGACCAGGCCTGCTATGTCTTTCACCAGCGTTGCCGCCTTCTCAGGGGTGTCAAGCAGGCCCTCTGGCTTACCGAGGCCAAGTTAATAAAATGCCTTCCTGAGAAAGTACTTGGCCTTGTTGATGATACAAGGAACCACATAGAGAACCAAGATGAGCGTCTTCTGAATTTGATCTCTCATGCCTGTCTCTGGCACTGTACTGAGTACGGCCCCAGGAGAGAGGCCTGCTGTCTGGTCATTGTGGACAGTCTGATAAAGTTGTGTAAGTCTCAGATTCTCAGGCATCCTTCTCTGGCCAGGCAGATTTGTGCCCAAAACTCCACGTTATCCACCACCTGGAATTGTGTCTGTTCTTCAGGGTCATGGTTCTAGTGGAGCCGGCTGAGTGCCAAGGATCCTCTGCCCCCGCCATCTCCTCCAGAGAAGAGGTTGAAGCTACTAAAAATCATGTTCTCGAGGCCTTCTGTCCCCTCTCCCCACTACTGATCTTCAGGAATGCAATGTTTCTGATGTGAAAGATGACACAGGATTCTGGGAGGGCTATCCTTACCCCTATCTCCATATCCTGCACTTCCTGGAGAAAGCCGATTTGCAACCACATAGCCTTCAACCAGATCAGCTGTGGGCCAAGATGATCCTGTTTGCTTTTGGCATTGCCCTGGCTCAGGCCCAGCTCCTCTGTGGCAATGACACCAAGATCTCGGAGCAGCCCGTGGTTGTGCAGAGTACATGCACAGACGGACGTGCATTCCATTTCCTGGTGTTACAGTAGAACACCACAGACCTGGCCTCTTAACAAGTGTGGCAAGAGTTTGGTCTGGGTGGAATCATGCCAGCTACTCTCTCAGCATTTTTGGTGTCTCCCAGTGATAAAAAAGAAGGTGGaGAGGGTGGTTGTGGAATGCGTTGGGCTGACTGGTTTCCAGTGGGAGACATCCAGGAAGTTTTTAGCTCTGTATTTACATGGTGCTACGTGAGCCAAGGACCATTCTGAGGCCCGAAACCCACCTTTGCCTTCTCCCACTGAAGAGGGCCTGGGGTCCCCCTGGAGCCTCAGTGCTCATCTAGCCTGGTGGTCTCACTGACAATAAAGAGCCCTTGCATTGCA
>NM_016491.4
CTCATTCGTTCCCAGCAGGCCCTGCGCGCGGCAACATGGCGGGGTCCAGGTGGAGGTCTTGAGGCTATCAGATCGGTATGGCATTGGCGTCCGGGCCCGCAAGGCGGGCGCTAGCTGGCTCCGGGCAGCTCGGCCTTGGGGGCTTCGGGGCCCCGAGACGCGGGGCGTATGAGTGGGGCGTGCGCTCCACGCGGAAGTCGGAGCCTCCTCCCCTGGATAGGGTGTACGAGATCCCTGGACTGGAGCCCATCACCTTTGCGGGGAAGATGCACTTCGTGCCCTGGCTGGCGCGGCCGATCTTTCCGCCCTGGGACCGCGGCTACAAGGACCCAAGGTTCTACCGCTCGCCCCCTCTTCACGAGCATCCGCTGTACAAAGACCAGGCCTGCTATATCTTTCACCACCGTTGCCGCCTTCTCGAGGGTGTAAAGCAGGCCCTCTGGCTCACCAAGACCAAGTTAATAGAAGGCCTTCCCGAGAAAGTGCTTAGCCTTGTTGATGATCCAAGGAACCACATAGAGAACCAAGACGAGTGCGTTCTGAATGTGATCTCTCACGCCCGTCTCTGGCAGACCACTGAGGAAATCCCCAAGAGAGAGACCTACTGCCCGGTCATCGTGGACAACCTAATACAGCTGTGTAAATCTCAGATTCTCAAGCATCCTTCTCTGGCCAGGAGGATCTGTGTCCAAAACTCCACGTTTTCTGCTACCTGGAACCGAGAGTCTCTTCTCCTTCAAGTCCGTGGTTCTGGTGGAGCCCGACTGAGCACTAAGGATCCTCTGCCCACCATCGCCTCCAGAGAGGAGATTGAAGCTACTAAGAATCATGTTCTAGAGACCTTCTACCCCATATCACCCATCATCGATCTTCATGAATGCAATATTTATGATGTGAAAAATGACACAGGATTCCAGGAAGGCTATCCTTACCCCTATCCCCATACCCTGTACTTACTGGACAAAGCCAATTTACGACCACACCGCCTTCAACCAGATCAGCTGCGGGCCAAGATGATCCTGTTTGCTTTTGGCAGTGCCCTGGCTCAGGCCCGGCTCCTCTATGGGAATGATGCCAAGGTCTTGGAGCAGCCCGTGGTGGTGCAGAGCGTGGGCACGGATGGACGTGTCTTCCATTTCCTAGTGTTTCAACTGAATACCACAGACCTGGACTGTAACGAGGGTGTCAAGAATTTGGCCTGGGTGGACTCAGACCAGCTCCTCTATCAGCATTTTTGGTGTCTCCCAGTGATCAAAAAGAGAGTGGTTGTGGAACCTGTTGGCCCAGTTGGTTTCAAGCCAGAGACATTCAGAAAGTTTTTAGCTCTATATTTGCATGGTGCTGCGTGAGCGGAGGACCCCTCTGAATCCTGAAACCCCTCTTGCCTCTCTTCCACGGAAGAGGGCCTGGGCCCCGTGGAGCCTCAGTGCCCGTTTGGCCTGCTGCTCTCGCTGACAATAAAGAGCCCTTGCGTTGCACTGAA

Publications

PMID - Link Title
No publications available for this retrocopy