Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name SLC30A5P1
Plot displaying the genomic locations of a retrocopy (in chr19) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr19:46111016-46111318  UCSC
Coordinates (T2T) chr19:48938423-48938725  UCSC
Coordinates (hg19) chr19:46614274-46614576  UCSC
Strand -
Parental Sequence NM_022902.5
Parental seq. overlap 258 bp
Parental seq. overlap (%) 6.5%
Genomic Region Intragenic (IGFL2)
Retrocopy Summary SLC30A5P1, located on chr19:46111016-46111318, is a retrocopy of the parental gene SLC30A5. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SLC30A5
Full Name solute carrier family 30 member 5
Also known as ZNT5|ZNTL1|ZTL1|ZnT-5
Coordinate chr5:69093993-69131069
Strand +
Gene summary This gene encodes a member of the SLC30A/ZnT family of zinc transporter proteins. ZnT proteins mediate both cellular zinc efflux and zinc sequestration into membrane-bound organelles. The encoded protein plays a role in the early secretory pathway as a heterodimer with zinc transporter 6, and may also regulate zinc sequestration into secretory granules of pancreatic beta cells. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the long arm of chromosome 19. [provided by RefSeq, Oct 2011]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SLC30A5P1
Bonobo Pan paniscus SLC30A5P1
Gorilla Gorilla gorilla SLC30A5P1
Green monkey Chlorocebus sabaeus SLC30A5P1
Rhesus Macaca mulatta SLC30A5P1
Golden snub-nosed monkey Rhinopithecus roxellana SLC30A5P1
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SLC30A5P1
TCATTCTGCCACTATTGGGACAGGACCAACTGATATAGAGGTGACATCCAATGTGCTGGAACAAAGAATGGTACTGCAAGTTGTAGGAGTAAAGATGCTAGATTAAACAATTTAACAATTCAAGTGGAAAAAGGGTTACTTTCAACATATGTCTGATCTAAGAACTGGATTTTATAATGTTCTGGCTATAACAAAACAAACGAAGAGTATAAAGTACTGCAAAAGACGGTACTTACATCATGTAAGATAACTCAACAACTACCCTGGGGTATGAGCAATAAAGAATAAATGACTCAGTATTTA
>NM_022902.5
GTCCCTACCGCCGCTGCTTCCCGGGAACCTGGCGCCGCCGGAACTGATCGCGGCCTAGTCCCGACGCGTGTGTGCTAGTGAGCCGGAGCCGGCGACGGCGGCAGTGGCGGCCCGGCCTGCAGGAGCCCGACGGGGTCTCTGCCATGGGGGAGTGACGCGCCTGCACCCGCTGTTCCgcggcagcggcgagacatgaggagaccccgcgacaggggcagcggcggcggcTCGTGAGCCCCGGGATGGAGGAGAAATAcggcggggacgtgctggccggccccggcggcggcggcggcCTTGGGCCGGTGGACGTACCCAGCGCTCGATTAACAAAATATATTGTGTTACTATGTTTCACTAAATTTTTGAAGGCTGTGGGACTTTTCGAATCATATGATCTCCTAAAAGCTGTTCACATTGTTCAGTTCATTTTTATATTAAAACTTGGGACTGCATTTTTTATGGTTTTGTTTCAAAAGCCATTTTCTTCTGGGAAAACTATTACCAAACACCAGTGGATCAAAATATTTAAACATGCAGTTGCTGGGTGTATTATTTCACTCTTGTGGTTTTTTGGCCTCACTCTTTGTGGACCACTAAGGACTTTGCTGCTATTTGAGCACAGTGATATTGTTGTCATTTCACTACTCAGTGTTTTGTTCACCAGTTCTGGAGGAGGACCAGCAAAGACAAGGGGAGCTGCTTTTTTCATTATTGCTGTGATCTGTTTATTGCTTTTTGACAATGATGATCTCATGGCTAAAATGGCTGAACACCCTGAAGGACATCATGACAGTGCTCTAACTCATATGCTTTACACAGCCATTGCCTTCTTAGGTGTGGCAGATCACAAGGGTGGAGTATTATTGCTAGTACTGGCTTTGTGTTGTAAAGTTGGTTTTCATACAGCTTCCAGAAAGCTCTCTGTCGACGTTGGTGGAGCTAAACGTCTTCAAGCTTTATCTCATCTTGTTTCTGTGCTTCTCTTGTGCCCATGGGTCATTGTTCTTTCTGTGACAACTGAGAGTAAAGTGGAGTCTTGGTTTTCTCTCATTATGCCTTTTGCAACGGTTATCTTTTTTGTCATGATCCTGGATTTCTACGTGGATTCCATTTGTTCAGTCAAAATGGAAGTTTCCAAATGTGCTCGTTATGGATCCTTTCCCATTTTTATTAGTGCTCTCCTTTTTGGAAATTTTTGGACACATCCAATAACAGACCAGCTTCGGGCTATGAACAAAGCAGCACACCAGGAGAGCACTGAACACGTCCTGTCTGGAGGAGTGGTAGTGAGTGCTATATTCTTCATTTTGTCTGCCAATATCTTATCATCTCCCTCTAAGAGAGGACAAAAAGGTACCCTTATTGGATATTCTCCTGAAGGAACACCTCTTTATAACTTCATGGGTGATGCTTTTCAGCATAGCTCTCAATCGATCCCTAGGTTTATTAAGGAATCACTAAAACAAATTCTTGAGGAGAGTGACTCTAGGCAGATCTTTTACTTCTTGTGCTTGAATCTGCTTTTTACCTTTGTGGAATTATTCTATGGCGTGCTGACCAATAGTCTGGGCCTGATCTCGGATGGATTCCACATGCTTTTTGACTGCTCTGCTTTAGTCATGGGACTTTTTGCTGCCCTGATGAGTAGGTGGAAAGCCACTCGGATTTTCTCCTATGGGTACGGCCGAATAGAAATTCTGTCTGGATTTATTAATGGACTTTTTCTAATAGTAATAGCGTTTTTTGTGTTTATGGAGTCAGTGGCTAGATTGATTGATCCTCCAGAATTAGACACTCACATGTTAACACCAGTCTCAGTTGGAGGGCTGATAGTAAACCTTATTGGTATCTGTGCCTTtagccatgcccatagccatgcccatGGAGCTTCTCAAGGAAGCTGTCACTCATCTGATCACAGCCATTCACACCATATGCATGGACACAGTGACCATGGGCATGGTCACAGCCACGGATCTGCGGGTGGAGGCATGAATGCTAACATGAGGGGTGTATTTCTACATGTTTTGGCAGATACACTTGGCAGCATTGGTGTGATCGTATCCACAGTTCTTATAGAGCAGTTTGGATGGTTCATCGCTGACCCACTCTGTTCTCTTTTTATTGCTATATTAATATTTCTCAGTGTTGTTCCACTGATTAAAGATGCCTGCCAGGTTCTACTCCTGAGATTGCCACCAGAATATGAAAAAGAACTACATATTGCTTTAGAAAAGATACAGAAAATTGAAGGATTAATATCATACCGAGACCCTCATTTTTGGCGTCATTCTGCTAGTATTGTGGCAGGAACAATTCATATACAGGTGACATCTGATGTGCTAGAACAAAGAATAGTACAGCAGGTTACAGGAATACTTAAAGATGCTGGAGTAAACAATTTAACAATTCAAGTGGAAAAGGAGGCATACTTTCAACATATGTCTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTATGACAAAACAAATGGAATCCATGAAATACTGCAAAGATGGTACTTACATCATGTGAGATAACTCAAGAATTACCCCTGGAGAATAAACAATGAAGATTAAATGACTCAGTATTTGTAATATTGCCAGAAGGATAAAAATTACACATTAACTGTACAGAAACAGAGTTCCCTACTACTGGATCAAGGAATCTTTCTTGAAGGAAATTTAAATACAGAATGAAACATTAATGGTAAAAGTGGAGTAATTATTTAAATTATGTGTATAAAAGGAATCAAATTTTGAGTAAACATGATGTATTACATCATCTTCAAAAATAGATATGATGGATTCTAGTGAAGACCAAAATTACTTCTGTTTACTTTCTATCAGGAAGCATCTCCATTGTAAATATGTATTTACATGTTTATTACAAAGACCCAAATGAAAAATTTTTAGTCCATTTTTTGCATAGCCTAAAGATAAAATAGGAATAAAAGTTCTATATTTATGGATTTTCTGTATATAAAACTGGTTTCTAATTATAACTTAAGTCCATTAAGTAAAATCTGTATTGCCACTTTAAATGTAAACTAAATTATTTGGGAGAAACTTCAACCACTGATATGAGATAAGCAATGAGAATAGGGAAGTGTATAACATCACAGTTTTTGATGTATTACAAAAATCAACCACTCTATAAAATAAATTTTTTTTACTTTTGGTAATATTTGCAAATGAATAATTAATTTATTAGGGTAAAGAACTTATACTAAGTTGTGTCCATGTTATTCATTTACTTACCATGTTCCTTTAAAGTAGAATATTTCCTTTCTTGTTATATATTTGACATTCCAAGCTGCTTATCAAGCTGGTATCCAAGCAGTGGTAAGCTTTCATCCTTTCTTAGCTCCATAACGTTGTGAAACAGCCAGTTAAGAGAATCGTAAATAATTGTCAACTCACAGTTGAATTCTCTGCCTATGTAGGTAACTTTTTTCTAATTTCTGGAACATATAGATATATAAGAAATATCAAAGAATAGGTAGTTATTTCAAAGTTTAATAAGTAAAACTTGTTCATAAACATTTGAGCACCATGAAATCAAAATACCCTATAACTACTTTCTATAGTCATATCTAATTTATATTTTTTTCATTTCCAGTTGTAACTAGATATGTAGTAAAGTCTGAAAAGACTTTACCATAGACAATAACATGCAGTTTTATCAGCACCAAAGAATGTTGTCCAAAAGAAACTTTTTAATACCTGTCTTTCTATTTATAACATCTGAATATTTTCATTCTTATATTAAGAATTTTGATAAGTAGATTGAATTTAGTATGAGTACTATTTTCTTATATATACCACAATGGCAAACATGTATTATAAATCATATTTTTGTCTTACCAATTTTAATATATGAGGGGTTTTAGAAATTTGTTGTAAGTTATTTTTATATTCCTTGTCTTTTGCATATTTTTTGGCCAAAATCTTCAATACATATTAAAATTTTTGAGTGGTGGGAAAA

Publications

PMID - Link Title