Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SLC25A36P1
Plot displaying the genomic locations of a retrocopy (in chr19) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr19:56386430-56386683  UCSC
Coordinates (T2T) chr19:59480834-59481087  UCSC
Coordinates (hg19) chr19:56897799-56898052  UCSC
Strand +
Parental Sequence NM_001104647.3
Parental seq. overlap 207 bp
Parental seq. overlap (%) 3.6%
Genomic Region Intragenic (ZNF582)
Retrocopy Summary SLC25A36P1, located on chr19:56386430-56386683, is a retrocopy of the parental gene SLC25A36. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SLC25A36
Full Name solute carrier family 25 member 36
Also known as PNC2
Coordinate chr3:140941836-140980995
Strand +
Gene summary Enables pyrimidine nucleotide transmembrane transporter activity. Involved in mitochondrial genome maintenance; pyrimidine nucleotide transport; and regulation of mitochondrial membrane potential. Located in mitochondrion. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SLC25A36P1
Bonobo Pan paniscus SLC25A36P1
Gorilla Gorilla gorilla SLC25A36P1
Orangutan Pongo abelii SLC25A36P1
Gibbon Nomascus leucogenys SLC25A36P1
Green monkey Chlorocebus sabaeus SLC25A36P1
Crab-eating macaque Macaca fascicularis SLC25A36P2
Rhesus Macaca mulatta SLC25A36P2
Baboon Papio anubis SLC25A36P2
Golden snub-nosed monkey Rhinopithecus roxellana SLC25A36P1
Marmoset Callithrix jacchus SLC25A36P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SLC25A36P1
AACCTTTTCATTTCTTAAAGGTGACCTTGGAAAAAGAAGGGCTTTTTTCCTTGTTTAGAGGATTAGGCCAGTTGATTGAGGGTGGGTCCTTCTAGAGCAACATACTTTGCTGATTATTCAAACTGCATGAAAAAGCTGAATGCTATAATGGACTGTGATTCTACCTGGTACATTATTTCAGCTACAGTGGCAGGTTTTACTGTACTTATAGCAACCAACCCCAGTTGACTTAAAGAGACTCAGATATAGCTT
>NM_001104647.3
AGCCTCTGGTGAAGGGCGGCGCGCTTAGGCAGGCGGTGGCGCGGCTGGAGTGCCGCGGGGAGGGCTGTGCCGGTTGCTTTCTGCAGCCGCATCTCGGCCAGCTCTCCTCGCCGTCCCCGGGGCGCTGTGCGTCTCCAGTCCGGGACCGAAGCCGCCTGCCGTAGCGGGCGGCCAGATCCGCGTCCCGCCTCAGCGGCCGGAGGACATGCGGGAGAGAGAATGAGCCAGAGGGACACGCTGGTGCATCTGTTTGCCGGAGGATGTGGTGGTACAGTGGGAGCTATTCTGACATGTCCACTGGAAGTTGTAAAAACACGACTGCAGTCATCTTCTGTGACGCTTTATATTTCTGAAGTTCAGCTGAACACCATGGCTGGAGCCAGTGTCAACCGAGTAGTGTCTCCCGGACCTCTTCATTGCCTAAAGGTGATCTTGGAAAAAGAAGGGCCTCGTTCCTTGTTTAGAGGACTAGGCCCCAATTTAGTGGGGGTAGCCCCTTCCAGAGCAATATACTTTGCTGCTTATTCAAACTGCAAGGAAAAGTTGAATGATGTATTTGATCCTGATTCTACCCAAGTACATATGATTTCAGCTGCAATGGCAGGTTTTACTGCAATCACAGCAACCAACCCCATTTGGCTTATAAAGACTCGGTTACAGCTTGATGCAAGGAACCGCGGGGAAAGGCGAATGGGTGCTTTTGAATGTGTTCGTAAAGTGTATCAGACAGATGGACTAAAAGGATTTTATAGGGGCATGTCTGCTTCATATGCTGGTATATCAGAGACTGTTATCCATTTTGTTATTTATGAAAGTATAAAACAAAAACTACTGGAATATAAGACTGCTTCTACAATGGAAAATGATGAAGAGTCTGTGAAAGAAGCATCAGATTTTGTGGGAATGATGCTAGCTGCTGCCACCTCAAAAACTTGTGCCACAACTATAGCATATCCACATGAAGTTGTAAGAACAAGACTACGTGAAGAGGGAACAAAATACAGATCTTTTTTTCAGACTCTATCTTTGCTTGTTCAAGAAGAAGGTTATGGGTCTCTTTATCGTGGTCTGACAACTCATCTAGTGAGACAGATTCCAAACACAGCCATTATGATGGCCACCTATGAATTGGTGGTTTACCTACTCAATGGATAGCAGCACGAGGACTGCTGTACTGCAAAAAAAGAAGACCAAAAGATTACAGTGGACCATGGGATACAGAAGCCAGCATGGCAGACAGAAGAAAAATAGTTTGGGAACATGTAACTATTCTAAGTGGAAGTTTTGTTGTAGGAATTATAGTAATCACACCACATTACTTGGCCTTTCGGTAATGTGAAAAAAAAAAAAAACCTCAGAGCCTCCAAGGAAATGCCTTTAGAAGCACTCCTCTCTCAAAATTGCCATTTTCTCTACCATGTCCCCCAGACACAGTTGGGTTTTGTTGATTTATGGCAGTCTTCTAAACAAAGCCATCCTTAATTTTACATACTGTATTGTAACTATCCAAAGATAGTATTGGCAGTCATAAATTTATAACTTCTGGCCTTTGTTTAATTCCAGTAAAATAACAGCAATGACAATGAGATCGTCAGTATTATTTTCACATTTCCCTGAGAGGACCTGGCACAATATTTTAAATTTAATTATTTGGCAGTAGTCACTGTTTTTGACAACCAATGAAATAGCGTCTAAATATCTTGTATATTTTTTAGCATCAAAATGTTTTGGTTTCCACTGCTGACAGGTGCTTGTTGTTTAGCCTAATGTGGATATTTAAATTGTTAACATACCAAACACACATGGTAATAGTTTGGGACAAAATAACTAGTAAAATGTTGATTTCTCGGCTTTTTCACTGACTGCGGCATGTCCTCGTGTCTTCTCTGATTTTGTGGTACATGAATGAATGCATTTATCTTTTTAGTGACTTACTAGTTACGAACTTGAATTATCACCTCTTTGTCATACTTAAGTATCATTTACATAAAGTGTAAAAGATTTTTTCACTTTTGAATCTTTACCTACTTGCTTTCACATTAAGAATTTGAACTTTTGAGTTTTTTCCAGGTCTATATATAATAGATTACATTTATTTTGTAAAGAAAATAGTAATTTAAAGTTTTGCCATTTTAAGGTGACAATATTTGGGACAGTATAAATATTATAGACAAGGGCCCCCTTGCTGTCTGCTTTAGCAGGTAGTGACATTAATTGACTTATAGTTTTGTGTAAATGAACAAACTGCTTTTGACAAGAAATTTATTCTGTCCTAGTTTCCTGCGTGGTAAATCATAGAAAGATTCAAGTTCATTTGGGTTAAATGTGCTAATAGGATGTAGCTTTTAAATTCTGCTATTGAGTCAGCTGTACCTTTTAATACTTTAAATGTGTTATTTGTATGGCCCTTATAAAGGTGTTTGCTGTAATTCTGTTAAAAGACTTCGCCTATGCCATACTGGTGTATAAAAACTGCCGCAATTGGACGCCGGTGTGGTACTCATTTCAGTATACCTGAACTGTACATTTTGTGCAATGGCTTTATCTAAAAGAATGACGCTTCGTGAAAGCACTTTGTGGCCTTTTTTGGGGGGGAGGGTGAGAGAGTAGGAGAGAATACCATGTTAAGATTAAAAAAAAAAACAAAAACATTGGTCACGTATTAGGCAGAAACAGTGTTCATAACATTTTTCTGGGTTTTAAATATGTTGTTTCGGATATCCTTAATATAAATGTTTTAGGTATTCTGTGTACCCTGTCGTACCCCCAACATTATAGAATATTGCAGCGTGTCATTGCAAGCTTTCTCTGCTGTCACCAGTGAAACATAGTGCCCTGTTAAATTCCCCCACTTTAACTTCCTTGTGATCAACAGTAACTGGATGTTTTTGAGGTGCTCAATTGGAATAAAAATATTCCAATCTATTTGGAGACCAAAGGCAAAATCAGTTTTCTTACCTTTGGAATTATTCGTACCTTTTATGGTAAATTTCAGCTTTGACATGTATTATGAGGAACGTACCAAAAACCGGTTTGTAACAAATCTGTAGAGAAGGTCTGAATCTATCGTGTTTGCCTTTTCAGGTGCCATTTCTACTGCCTAATACAGTGCCATTTGCCTTGTGAAGACCCATAAACATTCATTGTGTTGAATGTAAGATAGAGACTCTCCCTAGTCTTACTGATCTCAGTACCCCACAAATGATTAAGAATGATATGAAAACCAGCAGCTAAGGAACATCTTATTATTTAGTTGTAGCATATTCATAACAAGTGTCCTTCAAGGATAAACATATATTCTCTATTTGTATTTAGCAAGTAAAACTTGTGTTGACCTTTAGTGCATTATATTCAGCTTTTAACAGTATTATGTATGTACTGGAAAGCAAAGAAATCTTAGAGTCTTGGACATTGTTTATTTGTGCAACAACTAGAAAGGAGCAATGAAGTTTATTTCAGTTGTATTTTTCCCTAAGCACAATCTGCAATAGTTTATGTATGACAGAGATAATTCAAAAAGGAAAACTATATATAAAAGTTGTATATAAAGTTTGTCTCTGAAATATTTCTTTGAAGTTTTTAAAAAATCGACTCATGTTTAAAAACAAAAACACATATTCAGAGCATTGGACTTTTTTAACTTGTTTTCATCTGTTTATCATGACTTTTTTATTTCTGGTGTAGAGTCCACATTATTTAGTTTGTTGTACTTTTAAATTTCAAAGTTCAAATCTGAAGAATTAGCGTTTGTGATTTCGGGATACCATGCAGTGGTTTTAATCCCAGGAAAAAAACTATCACCAAAAGTTCGTTTGATTCTCATTATGTAACTTTGTAGAACCATCCTTTCTAGATGGGTCCACCACAGTGAATTTGTAACTTTGAAGTCAGGATAGAATATCATTAGATTATCTGTGAGATAGCATTACTATGTTAGGACCAGCAGAGTTTGGGTTGGTAAAAATAATGTTTGCTCTATTACTGGGTTACAGACATTTCAGCATTTTTAGGTTGGTTTTAAATCACTAAAAATATTTATTCGGATTTGAAGGATTTAAGTGCTAAAAATCAATCCATTTCTTGCCCTTCAATAATTGTCCATGCCTGCCTTTTGTTGTTTACATGCTCTTCTGCCCAGACTGTTAGTAATCTAGGGACCCCCTTTGGAGCTGATAAGTACAGTTCAGCCTTTTCTCCTCAAATATATAATGACTTTAACATTCCTAAGAATATAGGTATTTCTGAATGATTTAAATTTGAGGAATTTTAATACATAAAATACAATGTACAAACTTTCTGCCCACTCAGATCTCTTCTCCATCATGTACTTAGTATTTCCCATTAACCTACACACTGATTTTTATGCTACTCCTTGTAGAAACAAAATTCTGGTTTGACTCAGTTTTTGTGTTTATAAACTTTTGGAATGTGTACCCCGTTTATGTGAAGAATTATGACCTATCAGTCATAGCTAAATAGTGAACCTCAAAAGTGTTAACTTTTGACTATTCATGTGAGGTTTGGTATCTTGCATTTATGTACATGGCTGTAAATTATGTGCATTTACTCTGTATTTATGTTATCTAGCTGACTTTTACTTGAATTGTTCAAATTTTAAAAATTAAAATACGCTCATGAAAATATGGCTTTTTCTGTAATATATCAACATTTTATTGAGAACATAATCACACTTTTTTGGATTATCCTATGTGTGGAACAAAAATCCATTGCCATTTTCAGGTTAAGTTTTAGGCTCGCTTGATTCAGTCAGCAAACCTTATCTTGAGCACTTTGTATCTGTTAGATCTAGTGATGTCTGAAGGAACCCAAAGGTCAAGTAATCCAACTCCCTCATAGTGTACAAAGAAATCTTGCATATCTTCCACAGGTTTATTGACTTTTATCCAACACTTTTCATGTTTTAATTTCAGCCTTTGTGAAAGTTGATATTAAAAATACAGAGGTGAGAACTTGTTAGAATAACCAAATGAATCCACATAATGTTAGATCAAAATACAAATGACAAAGATAAAATGCTATGTAGTGCCTACCCTCTTTACATTTTGTCTATTTTATTTAAGTTTTTCTGTATTGTAGTTAACATCAAACATTGTCCAGTCTTGAGGAAACCAGGACGAAATATATTTTGTATTTCAACATTGACATAAATCTGAAATTGTTGGTTCTACTAATAGTACTCTGCACTGAAGGCACTGGCAAAATAATGGTTAAAATTGAGCACAGGTGTTCCAAGTTGTGTGTGTGTGTTTATTACTGAACATTGGGAGCCGTGATAGGGAAGTAATTTGTGAGTTCATGATTTCTTAAGGTTCTAGTGTGACATTTATACACTGATAAAACTCAGGCAAGCAAAATGTAATTAAATGTTCCCCCTGCCCCCCCCCCCTTTTAATATATATACacggagcttcactcttgtcacccatgctggagtgcaatgacatgatctcaggtcactgcaacctctgcctcccgggttcaagcgattctgcctcagcctGACTTCCCTTCTGTTTCTTTATTTTCGCACTGTGTAGACCAGCTGACTGCCTTAATATGTATTGAATCAATTCAAGATTTATGTTCATAGAGTGCTGTGTTTATACAGTGGTGTCATGTGATTTCTTAATAGCCTATAGATCCAATAAATACAGAGGAATATTAGTTACAACTGGA

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