Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name CENATACP1
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr20:13073495-13074314  UCSC
Coordinates (T2T) chr20:13116876-13117695  UCSC
Coordinates (hg19) chr20:13054143-13054962  UCSC
Strand -
Parental Sequence NM_198489.3_2
Parental seq. overlap 691 bp
Parental seq. overlap (%) 53%
Genomic Region Intragenic (SPTLC3)
Retrocopy Summary CENATACP1, located on chr20:13073495-13074314, is a retrocopy of the parental gene CENATAC. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CENATAC
Full Name centrosomal AT-AC splicing factor
Also known as CCDC84|DLNB14
Coordinate chr11:118998138-119015793
Strand +
Gene summary This gene encodes a protein thought to contain a coiled coil motif. No function has been determined for the encoded protein. A pseudogene of this gene is located on chromosome 20. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Aug 2013]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes CCDC84P1
Bonobo Pan paniscus CCDC84P1
Gorilla Gorilla gorilla CCDC84P1
Orangutan Pongo abelii CCDC84P1
Gibbon Nomascus leucogenys CCDC84P1
Green monkey Chlorocebus sabaeus CCDC84P1
Crab-eating macaque Macaca fascicularis CCDC84P1
Rhesus Macaca mulatta CCDC84P1
Baboon Papio anubis CCDC84P1
Golden snub-nosed monkey Rhinopithecus roxellana CCDC84P1
Marmoset Callithrix jacchus CENATACP1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CENATACP1
CTCCCCAGGATTATGCACGATTCAAAAAATCCCTGGTGGAAGACTTGGGTTCCTATGAAGAAAAAGAGGATGAGGTGACCAAGGAGATGGCAGCTCAGATCTGTGAGGTGGAACAGAGCTGGCAGGAGGTGGTTCAGTCTGTCCTAGAGGTTGGTTTCCCTCGGAGGATCCAGACCCCCTCAGCCAGTGCCGGGCACTTTAGTCCCTGGAAGCTGGAAAAGGATGAACAGCCAGGTAGCTTCCAGCCCACAGCAGGCCTCCAACTTGGACCTGCCACAGCTCCAGAGCTTGACTGGATGGAGACAGGACTATCTCCGATATTCATTGGTCATCAGGATATACCAGGAGTTGGTAACATCCACTCAGGTGCCACACCTCCCTGGATGATCCAGGATGAAGAATGCATCTCTGGGAACCAACAAACAGGACCGTCCTATAAAGAATTTATTAAAGAAAAGGAAAAAGAGAAGTTGAAGGAACTTTCCCCAAACTGAGTTGGGGCCAACTTTAATCACAGCTCCAGGACCAGTGCAGGCTGGCTGCCCTCTTTGGACCGTGTCTGGAATAATGGATACTGTTGGCAGTTCAGGCGTCAACTCAGAACTGAAGCTGCAGCAATGAACAAGCAGATAAGCAGTCACATTAAAAAAAAATGTTAATCATTCCCTGATGCTCTACCAACTACCGTGAGGCTAAAAGCAAAGTCAACAAACTCCTACCCACTATTATTCCTTCCACCAAGTTCATTATCATTGTCTTTCTTAGGAAACAGACATGCCCATTCATTTGATTTAATAAAGTTTTATTTTCCCAAATGTAA
>NM_198489.3_2
AGAGGCCGCCGGATGGCGTAGGATCGGCCGCTGGTGGTGGTGATACCGGGTACCCGGGCTATGGCGCCGGCGCAGCGCTGCCCTCTGTGCCGCCAGACCTTCTTCTGTGGTCGCGGGCACGTTTACAGCCGCAAGCACCAGCGGCAGCTGAAGGAGGCTTTGGAGAGGCTCCTGCCCCAGGTGGAGGCGGCCCGCAAGGCCATCCGCGCCGCTCAGGTGGAGCGCTATGTGCCCGAACACGAGCGATGCTGCTGGTGCCTGTGCTGCGGCTGTGAGGTGCGGGAACACCTGAGCCATGGAAACCTGACGGTGCTGTACGGGGGGCTGCTGGAGCATCTGGCCAGCCCAGAGCACAAGAAAGCAACCAACAAATTCTGGTGGGAGAACAAAGCTGAGGTCCAGATGAAAGAGAAGTTTCTGGTCACTCCCCAGGATTATGCGCGATTCAAGAAATCCATGGTGAAAGGTTTGGATTCCTATGAAGAAAAGGAGGATAAAGTGATCAAGGAGATGGCAGCTCAGATCCGTGAGGTGGAGCAGAGCCGACAGGAGGTGGTTCGGTCTGTCTTAGAGCCTCAGGCAGTGCCAGACCCAGAAGAGGGCTCTTCAGCACCTAGAAGCTGGAAAGGGATGAACAGCCAAGTAGCTTCCAGCTTACAGCAGCCCTCAAATTTGGACCTGCCACCAGCTCCAGAGCTTGACTGGATGGAGACAGGACCATCTCTGACATTCATTGGCCATCAGGATATACCAGGAGTTGGTAACATCCACTCAGGTGCCACACCTCCCTGGATGATCCAAGATGAAGAATACATTGCTGGGAACCAAGAAATAGGACCATCCTATGAAGAATTTCTTAAAGAAAAGGAAAAACAGAAGTTGAAAAAACTCCCCCCAGACCGAGTTGGGGCCAACTTTGATCACAGCTCCAGGACCAGTGCAGGCTGGCTGCCCTCTTTTGGCCGCGTCTGGAATAATGGACGCCGCTGGCAGTCCAGACATCAATTCAAAACTGAAGCTGCAGCAATGAAGAAGCAGTCACATACAGAAAAAAGCTAATCATGCTCTCTACCAACTACCATGAGGCTAAAAGCAAAGTCAACAAACCCCTATTATACCTTCCACCAAATTCTTTATCATTGTCTTTCTTAGGAAACAGACATACTCATTCATTTGATTTAATAAAGTTTTATTTTTCCAAATGTACAGCTGGTTGGACCTGTAAAAAAAAATTAAAAGAATCAGAACCATAAA

Publications

PMID - Link Title